Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04680 and HMPREF1078_RS04685 are separated by 12 nucleotides HMPREF1078_RS04685 and HMPREF1078_RS04690 are separated by 14 nucleotides HMPREF1078_RS04690 and HMPREF1078_RS04695 are separated by 91 nucleotides
HMPREF1078_RS04680: HMPREF1078_RS04680 - FtsX-like permease family protein, at 180,519 to 181,754
_RS04680
HMPREF1078_RS04685: HMPREF1078_RS04685 - 30S ribosome-binding factor RbfA, at 181,767 to 182,102
_RS04685
HMPREF1078_RS04690: HMPREF1078_RS04690 - O-methyltransferase, at 182,117 to 182,740
_RS04690
HMPREF1078_RS04695: HMPREF1078_RS04695 - pyruvate kinase, at 182,832 to 184,283
_RS04695
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 181.800 kb on - strand at 181.802 kb on - strand, within HMPREF1078_RS04685 at 182.206 kb on + strand, within HMPREF1078_RS04690 at 182.212 kb on + strand, within HMPREF1078_RS04690 at 182.233 kb on + strand, within HMPREF1078_RS04690 at 182.325 kb on + strand, within HMPREF1078_RS04690 at 182.395 kb on + strand, within HMPREF1078_RS04690 at 182.423 kb on + strand, within HMPREF1078_RS04690 at 182.424 kb on - strand, within HMPREF1078_RS04690 at 182.424 kb on - strand, within HMPREF1078_RS04690 at 182.424 kb on - strand, within HMPREF1078_RS04690 at 182.429 kb on - strand, within HMPREF1078_RS04690 at 182.429 kb on - strand, within HMPREF1078_RS04690 at 182.497 kb on + strand, within HMPREF1078_RS04690 at 182.533 kb on + strand, within HMPREF1078_RS04690 at 182.534 kb on - strand, within HMPREF1078_RS04690 at 182.534 kb on - strand, within HMPREF1078_RS04690 at 182.542 kb on + strand, within HMPREF1078_RS04690 at 182.542 kb on + strand, within HMPREF1078_RS04690 at 182.542 kb on + strand, within HMPREF1078_RS04690 at 182.542 kb on + strand, within HMPREF1078_RS04690 at 182.543 kb on - strand, within HMPREF1078_RS04690 at 182.547 kb on + strand, within HMPREF1078_RS04690 at 182.548 kb on - strand, within HMPREF1078_RS04690 at 182.555 kb on - strand, within HMPREF1078_RS04690 at 182.556 kb on + strand, within HMPREF1078_RS04690 at 182.556 kb on + strand, within HMPREF1078_RS04690 at 182.556 kb on + strand, within HMPREF1078_RS04690 at 182.556 kb on + strand, within HMPREF1078_RS04690 at 182.556 kb on + strand, within HMPREF1078_RS04690 at 182.557 kb on - strand, within HMPREF1078_RS04690 at 182.557 kb on - strand, within HMPREF1078_RS04690 at 182.560 kb on + strand, within HMPREF1078_RS04690 at 182.561 kb on - strand, within HMPREF1078_RS04690 at 182.609 kb on - strand, within HMPREF1078_RS04690 at 182.612 kb on + strand, within HMPREF1078_RS04690 at 182.722 kb on + strand at 182.723 kb on - strand at 182.723 kb on - strand at 182.724 kb on + strand at 182.724 kb on + strand at 182.725 kb on - strand at 182.732 kb on + strand at 182.759 kb on - strand at 182.773 kb on - strand at 182.779 kb on + strand at 182.808 kb on - strand at 182.808 kb on - strand at 182.833 kb on + strand at 182.834 kb on - strand at 182.857 kb on + strand at 182.857 kb on + strand at 182.858 kb on - strand at 182.878 kb on - strand at 182.878 kb on - strand at 182.895 kb on - strand at 182.895 kb on - strand at 183.004 kb on + strand, within HMPREF1078_RS04695 at 183.011 kb on - strand, within HMPREF1078_RS04695 at 183.031 kb on + strand, within HMPREF1078_RS04695 at 183.032 kb on - strand, within HMPREF1078_RS04695 at 183.032 kb on - strand, within HMPREF1078_RS04695 at 183.074 kb on + strand, within HMPREF1078_RS04695 at 183.075 kb on - strand, within HMPREF1078_RS04695 at 183.075 kb on - strand, within HMPREF1078_RS04695
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 181,800 - +0.4 181,802 - HMPREF1078_RS04685 0.10 -1.4 182,206 + HMPREF1078_RS04690 0.14 -0.5 182,212 + HMPREF1078_RS04690 0.15 -0.1 182,233 + HMPREF1078_RS04690 0.19 -1.5 182,325 + HMPREF1078_RS04690 0.33 -0.1 182,395 + HMPREF1078_RS04690 0.45 -0.6 182,423 + HMPREF1078_RS04690 0.49 -0.6 182,424 - HMPREF1078_RS04690 0.49 +1.1 182,424 - HMPREF1078_RS04690 0.49 +1.6 182,424 - HMPREF1078_RS04690 0.49 -0.2 182,429 - HMPREF1078_RS04690 0.50 +0.2 182,429 - HMPREF1078_RS04690 0.50 +0.2 182,497 + HMPREF1078_RS04690 0.61 +0.4 182,533 + HMPREF1078_RS04690 0.67 +1.6 182,534 - HMPREF1078_RS04690 0.67 +0.9 182,534 - HMPREF1078_RS04690 0.67 -0.7 182,542 + HMPREF1078_RS04690 0.68 +4.7 182,542 + HMPREF1078_RS04690 0.68 -2.0 182,542 + HMPREF1078_RS04690 0.68 -1.7 182,542 + HMPREF1078_RS04690 0.68 -0.6 182,543 - HMPREF1078_RS04690 0.68 +1.8 182,547 + HMPREF1078_RS04690 0.69 -1.9 182,548 - HMPREF1078_RS04690 0.69 +0.9 182,555 - HMPREF1078_RS04690 0.70 +1.5 182,556 + HMPREF1078_RS04690 0.70 -1.1 182,556 + HMPREF1078_RS04690 0.70 -0.9 182,556 + HMPREF1078_RS04690 0.70 +2.3 182,556 + HMPREF1078_RS04690 0.70 -0.5 182,556 + HMPREF1078_RS04690 0.70 -1.0 182,557 - HMPREF1078_RS04690 0.71 -0.6 182,557 - HMPREF1078_RS04690 0.71 +0.2 182,560 + HMPREF1078_RS04690 0.71 -0.4 182,561 - HMPREF1078_RS04690 0.71 -0.4 182,609 - HMPREF1078_RS04690 0.79 +0.3 182,612 + HMPREF1078_RS04690 0.79 +0.2 182,722 + -0.7 182,723 - +1.5 182,723 - +1.8 182,724 + -0.5 182,724 + +0.3 182,725 - -0.5 182,732 + -1.0 182,759 - +0.4 182,773 - -1.0 182,779 + -1.9 182,808 - -0.4 182,808 - -0.3 182,833 + -0.5 182,834 - +0.2 182,857 + -2.2 182,857 + -2.9 182,858 - -0.2 182,878 - +0.4 182,878 - +3.8 182,895 - +0.1 182,895 - -0.5 183,004 + HMPREF1078_RS04695 0.12 -3.3 183,011 - HMPREF1078_RS04695 0.12 +0.6 183,031 + HMPREF1078_RS04695 0.14 -0.8 183,032 - HMPREF1078_RS04695 0.14 -0.2 183,032 - HMPREF1078_RS04695 0.14 -0.4 183,074 + HMPREF1078_RS04695 0.17 -1.6 183,075 - HMPREF1078_RS04695 0.17 -0.8 183,075 - HMPREF1078_RS04695 0.17 +1.6
Or see this region's nucleotide sequence