Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04650 and HMPREF1078_RS04655 are separated by 3 nucleotides HMPREF1078_RS04655 and HMPREF1078_RS04660 are separated by 3 nucleotides HMPREF1078_RS04660 and HMPREF1078_RS04665 are separated by 26 nucleotides
HMPREF1078_RS04650: HMPREF1078_RS04650 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 169,775 to 171,247
_RS04650
HMPREF1078_RS04655: HMPREF1078_RS04655 - penicillin-binding protein, at 171,251 to 173,449
_RS04655
HMPREF1078_RS04660: HMPREF1078_RS04660 - FtsL-like putative cell division protein, at 173,453 to 173,797
_RS04660
HMPREF1078_RS04665: HMPREF1078_RS04665 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 173,824 to 174,750
_RS04665
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 171.253 kb on - strand at 171.538 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 171.626 kb on - strand, within HMPREF1078_RS04655 at 173.461 kb on - strand at 173.499 kb on - strand, within HMPREF1078_RS04660 at 173.514 kb on - strand, within HMPREF1078_RS04660 at 173.833 kb on - strand at 173.833 kb on - strand at 173.836 kb on - strand at 173.855 kb on - strand at 174.143 kb on - strand, within HMPREF1078_RS04665 at 174.191 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.322 kb on - strand, within HMPREF1078_RS04665 at 174.324 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.328 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.331 kb on - strand, within HMPREF1078_RS04665 at 174.376 kb on - strand, within HMPREF1078_RS04665
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 171,253 - -0.2 171,538 - HMPREF1078_RS04655 0.13 -2.3 171,626 - HMPREF1078_RS04655 0.17 -1.0 171,626 - HMPREF1078_RS04655 0.17 -0.8 171,626 - HMPREF1078_RS04655 0.17 -3.3 171,626 - HMPREF1078_RS04655 0.17 +1.2 171,626 - HMPREF1078_RS04655 0.17 -1.9 173,461 - -0.8 173,499 - HMPREF1078_RS04660 0.13 -2.9 173,514 - HMPREF1078_RS04660 0.18 -1.1 173,833 - +0.1 173,833 - +0.6 173,836 - -3.7 173,855 - -0.3 174,143 - HMPREF1078_RS04665 0.34 +1.1 174,191 - HMPREF1078_RS04665 0.40 -0.3 174,322 - HMPREF1078_RS04665 0.54 +1.8 174,322 - HMPREF1078_RS04665 0.54 +0.4 174,322 - HMPREF1078_RS04665 0.54 -0.9 174,322 - HMPREF1078_RS04665 0.54 +0.5 174,324 - HMPREF1078_RS04665 0.54 +2.1 174,328 - HMPREF1078_RS04665 0.54 +1.2 174,328 - HMPREF1078_RS04665 0.54 -0.3 174,328 - HMPREF1078_RS04665 0.54 +1.1 174,328 - HMPREF1078_RS04665 0.54 +1.2 174,331 - HMPREF1078_RS04665 0.55 +0.0 174,331 - HMPREF1078_RS04665 0.55 -0.2 174,376 - HMPREF1078_RS04665 0.60 -1.8
Or see this region's nucleotide sequence