Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04545 and HMPREF1078_RS04550 are separated by 126 nucleotides HMPREF1078_RS04550 and HMPREF1078_RS04555 are separated by 2 nucleotides HMPREF1078_RS04555 and HMPREF1078_RS04560 are separated by 315 nucleotides
HMPREF1078_RS04545: HMPREF1078_RS04545 - 5'/3'-nucleotidase SurE, at 141,990 to 142,766
_RS04545
HMPREF1078_RS04550: HMPREF1078_RS04550 - response regulator transcription factor, at 142,893 to 143,624
_RS04550
HMPREF1078_RS04555: HMPREF1078_RS04555 - HAMP domain-containing sensor histidine kinase, at 143,627 to 145,180
_RS04555
HMPREF1078_RS04560: HMPREF1078_RS04560 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 145,496 to 146,320
_RS04560
Position (kb) 143
144
145
146 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 142.767 kb on - strand at 142.791 kb on - strand at 142.793 kb on - strand at 142.810 kb on + strand at 142.821 kb on + strand at 142.830 kb on + strand at 142.830 kb on + strand at 142.831 kb on - strand at 142.834 kb on + strand at 142.834 kb on + strand at 142.834 kb on + strand at 142.835 kb on - strand at 142.835 kb on - strand at 142.850 kb on - strand at 142.891 kb on - strand at 142.895 kb on - strand at 142.895 kb on - strand at 143.639 kb on - strand at 143.639 kb on - strand at 143.646 kb on - strand at 143.646 kb on - strand at 143.651 kb on - strand at 143.651 kb on - strand at 143.697 kb on - strand at 143.702 kb on - strand at 143.718 kb on - strand at 143.721 kb on - strand at 143.726 kb on - strand at 143.734 kb on - strand at 143.734 kb on - strand at 143.955 kb on - strand, within HMPREF1078_RS04555 at 143.983 kb on - strand, within HMPREF1078_RS04555 at 143.983 kb on - strand, within HMPREF1078_RS04555 at 143.983 kb on - strand, within HMPREF1078_RS04555 at 143.983 kb on - strand, within HMPREF1078_RS04555 at 143.983 kb on - strand, within HMPREF1078_RS04555 at 144.031 kb on - strand, within HMPREF1078_RS04555 at 144.031 kb on - strand, within HMPREF1078_RS04555 at 144.056 kb on - strand, within HMPREF1078_RS04555 at 144.056 kb on - strand, within HMPREF1078_RS04555 at 144.200 kb on - strand, within HMPREF1078_RS04555 at 144.353 kb on - strand, within HMPREF1078_RS04555 at 144.355 kb on - strand, within HMPREF1078_RS04555 at 144.384 kb on - strand, within HMPREF1078_RS04555 at 144.408 kb on - strand, within HMPREF1078_RS04555 at 144.413 kb on - strand, within HMPREF1078_RS04555 at 144.436 kb on - strand, within HMPREF1078_RS04555 at 144.525 kb on - strand, within HMPREF1078_RS04555 at 144.536 kb on - strand, within HMPREF1078_RS04555 at 144.631 kb on - strand, within HMPREF1078_RS04555 at 144.635 kb on - strand, within HMPREF1078_RS04555 at 144.773 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.787 kb on + strand, within HMPREF1078_RS04555 at 144.788 kb on - strand, within HMPREF1078_RS04555 at 144.792 kb on - strand, within HMPREF1078_RS04555 at 144.796 kb on + strand, within HMPREF1078_RS04555 at 144.797 kb on - strand, within HMPREF1078_RS04555 at 144.848 kb on - strand, within HMPREF1078_RS04555 at 144.859 kb on + strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.953 kb on + strand, within HMPREF1078_RS04555 at 144.954 kb on - strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.958 kb on - strand, within HMPREF1078_RS04555 at 145.094 kb on - strand at 145.094 kb on - strand at 145.097 kb on + strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.102 kb on - strand at 145.163 kb on + strand at 145.180 kb on + strand at 145.186 kb on + strand at 145.187 kb on - strand at 145.308 kb on + strand at 145.331 kb on + strand at 145.331 kb on + strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.351 kb on - strand at 145.351 kb on - strand at 145.358 kb on + strand at 145.374 kb on + strand at 145.384 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.397 kb on - strand at 145.424 kb on + strand at 145.461 kb on - strand at 145.466 kb on + strand at 145.466 kb on + strand at 145.481 kb on + strand at 145.501 kb on - strand at 145.514 kb on - strand at 145.521 kb on + strand at 145.537 kb on - strand at 145.539 kb on + strand at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.714 kb on - strand, within HMPREF1078_RS04560 at 145.727 kb on - strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.986 kb on + strand, within HMPREF1078_RS04560 at 146.013 kb on + strand, within HMPREF1078_RS04560 at 146.099 kb on - strand, within HMPREF1078_RS04560 at 146.159 kb on + strand, within HMPREF1078_RS04560 at 146.160 kb on - strand, within HMPREF1078_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 142,767 - -1.2 142,791 - -0.5 142,793 - -0.3 142,810 + +2.6 142,821 + -2.5 142,830 + -0.8 142,830 + -3.0 142,831 - -0.8 142,834 + -1.7 142,834 + -0.6 142,834 + +0.9 142,835 - -2.9 142,835 - -1.6 142,850 - -2.9 142,891 - -1.3 142,895 - -2.5 142,895 - -1.4 143,639 - -2.7 143,639 - -2.7 143,646 - -0.6 143,646 - -0.6 143,651 - -0.3 143,651 - -0.3 143,697 - -0.5 143,702 - -0.4 143,718 - -2.3 143,721 - +0.4 143,726 - -1.2 143,734 - -0.5 143,734 - -2.6 143,955 - HMPREF1078_RS04555 0.21 -2.1 143,983 - HMPREF1078_RS04555 0.23 -2.7 143,983 - HMPREF1078_RS04555 0.23 -1.3 143,983 - HMPREF1078_RS04555 0.23 -1.6 143,983 - HMPREF1078_RS04555 0.23 -4.2 143,983 - HMPREF1078_RS04555 0.23 -1.6 144,031 - HMPREF1078_RS04555 0.26 -1.6 144,031 - HMPREF1078_RS04555 0.26 -2.4 144,056 - HMPREF1078_RS04555 0.28 -4.0 144,056 - HMPREF1078_RS04555 0.28 -1.6 144,200 - HMPREF1078_RS04555 0.37 -2.0 144,353 - HMPREF1078_RS04555 0.47 -0.8 144,355 - HMPREF1078_RS04555 0.47 -2.0 144,384 - HMPREF1078_RS04555 0.49 -1.3 144,408 - HMPREF1078_RS04555 0.50 -2.0 144,413 - HMPREF1078_RS04555 0.51 +1.8 144,436 - HMPREF1078_RS04555 0.52 -1.7 144,525 - HMPREF1078_RS04555 0.58 -1.1 144,536 - HMPREF1078_RS04555 0.58 -2.2 144,631 - HMPREF1078_RS04555 0.65 -2.7 144,635 - HMPREF1078_RS04555 0.65 -2.5 144,773 - HMPREF1078_RS04555 0.74 -3.0 144,782 - HMPREF1078_RS04555 0.74 -1.0 144,782 - HMPREF1078_RS04555 0.74 -0.5 144,787 + HMPREF1078_RS04555 0.75 +0.0 144,788 - HMPREF1078_RS04555 0.75 -2.0 144,792 - HMPREF1078_RS04555 0.75 -0.8 144,796 + HMPREF1078_RS04555 0.75 -1.3 144,797 - HMPREF1078_RS04555 0.75 -2.1 144,848 - HMPREF1078_RS04555 0.79 -1.6 144,859 + HMPREF1078_RS04555 0.79 -0.6 144,860 - HMPREF1078_RS04555 0.79 -1.6 144,860 - HMPREF1078_RS04555 0.79 -3.3 144,953 + HMPREF1078_RS04555 0.85 +0.5 144,954 - HMPREF1078_RS04555 0.85 -0.1 144,957 + HMPREF1078_RS04555 0.86 -0.3 144,957 + HMPREF1078_RS04555 0.86 -0.3 144,957 + HMPREF1078_RS04555 0.86 +0.2 144,958 - HMPREF1078_RS04555 0.86 -2.2 145,094 - -2.1 145,094 - -2.3 145,097 + -1.2 145,098 - -0.6 145,098 - -2.8 145,098 - -2.6 145,098 - -0.8 145,102 - -0.9 145,163 + +0.0 145,180 + +1.2 145,186 + -1.1 145,187 - -1.0 145,308 + +1.6 145,331 + +0.0 145,331 + -1.2 145,332 - -2.3 145,332 - +0.3 145,332 - -0.4 145,351 - -0.7 145,351 - -0.6 145,358 + -0.0 145,374 + +1.3 145,384 + +0.3 145,396 + +0.5 145,396 + -0.1 145,396 + +1.5 145,397 - -1.5 145,424 + +0.8 145,461 - +0.7 145,466 + +0.8 145,466 + +0.5 145,481 + -0.8 145,501 - -0.3 145,514 - -0.5 145,521 + -0.6 145,537 - -0.3 145,539 + -1.2 145,603 + HMPREF1078_RS04560 0.13 -0.0 145,603 + HMPREF1078_RS04560 0.13 +0.0 145,714 - HMPREF1078_RS04560 0.26 -1.7 145,727 - HMPREF1078_RS04560 0.28 -0.6 145,749 + HMPREF1078_RS04560 0.31 +0.0 145,749 + HMPREF1078_RS04560 0.31 -0.3 145,749 + HMPREF1078_RS04560 0.31 +0.5 145,749 + HMPREF1078_RS04560 0.31 +1.0 145,750 - HMPREF1078_RS04560 0.31 -0.2 145,750 - HMPREF1078_RS04560 0.31 -2.3 145,947 - HMPREF1078_RS04560 0.55 +0.0 145,947 - HMPREF1078_RS04560 0.55 -0.9 145,986 + HMPREF1078_RS04560 0.59 -1.6 146,013 + HMPREF1078_RS04560 0.63 -1.4 146,099 - HMPREF1078_RS04560 0.73 +0.9 146,159 + HMPREF1078_RS04560 0.80 +0.6 146,160 - HMPREF1078_RS04560 0.80 -0.7
Or see this region's nucleotide sequence