Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04450

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
120,768	+				-0.2
120,768	+				-0.6
120,769	-				+0.3
120,770	+				-0.2
120,780	+		HMPREF1078_RS04445	0.11	+0.2
120,834	+		HMPREF1078_RS04445	0.29	+1.6
120,834	+		HMPREF1078_RS04445	0.29	+0.8
120,835	-		HMPREF1078_RS04445	0.29	+0.2
120,835	-		HMPREF1078_RS04445	0.29	-3.0
120,835	-		HMPREF1078_RS04445	0.29	-0.4
120,835	-		HMPREF1078_RS04445	0.29	-0.4
120,835	-		HMPREF1078_RS04445	0.29	-1.0
120,835	-		HMPREF1078_RS04445	0.29	-0.5
120,836	+		HMPREF1078_RS04445	0.29	-0.8
120,872	+		HMPREF1078_RS04445	0.41	-0.4
120,883	+		HMPREF1078_RS04445	0.45	+1.5
120,883	+		HMPREF1078_RS04445	0.45	+1.6
120,894	+		HMPREF1078_RS04445	0.48	-0.6
120,895	-		HMPREF1078_RS04445	0.49	+0.5
120,953	-		HMPREF1078_RS04445	0.67	-0.5
120,957	+		HMPREF1078_RS04445	0.69	+2.0
120,958	-		HMPREF1078_RS04445	0.69	-0.3
120,983	+		HMPREF1078_RS04445	0.77	+0.3
121,017	+		HMPREF1078_RS04445	0.88	+0.8
121,073	+				+0.4
121,073	+				+0.4
121,073	+				-1.8
121,073	+				+0.5
121,074	-				+0.6
121,074	-				+1.1
121,087	+				-1.4
121,099	-				+1.0
121,108	-				+0.1
121,144	+				+1.7
121,144	+				-0.4
121,144	+				-0.7
121,151	-				-2.7
121,163	+				-0.4
121,163	+				-1.9
121,163	+				+0.1
121,164	-				+0.5
121,165	+				-1.3
121,165	+				+0.4
121,212	+				-0.9
121,251	-				+0.1
121,253	+				-0.3
121,253	+				+0.3
121,255	+				-1.0
121,255	+				+0.4
121,256	-				-1.3
121,256	-				+0.0
121,256	-				+0.7
121,256	-				-0.6
121,256	-				+0.4
121,261	+				+0.3
121,283	-				-1.1
121,289	+				-1.7
121,289	+				+0.1
121,290	-				-0.5
121,291	+				-0.3
121,291	+				-1.3
121,301	-				-2.4
121,322	+				+1.0
121,322	+				+1.5
121,326	+				-0.4
121,334	+				+0.4
121,334	+				-1.0
121,334	+				-0.4
121,334	+				-0.8
121,334	+				-0.8
121,334	+				-0.2
121,334	+				+0.7
121,334	+				+0.6
121,334	+				-0.5
121,334	+				+0.0
121,334	+				+2.1
121,334	+				-0.5
121,335	-				-3.2
121,335	-				+1.0
121,335	-				+0.8
121,335	-				-2.9
121,335	-				-0.4
121,335	-				+1.5
121,335	-				+2.9
121,335	-				+2.1
121,335	-				-1.3
121,335	-				-0.7
121,338	+				+0.3
121,339	-				+2.2
121,339	-				-0.6
121,343	+				+0.8
121,343	+				-0.0
121,344	-				+0.4
121,344	-				-0.2
121,344	-				-0.3
121,344	-				+0.4
121,344	-				-0.2
121,345	+				+1.1
121,346	-				+1.4
121,390	-				+0.5
121,391	+				+0.2
121,414	+				+0.7
121,436	+				-1.0
121,487	+				+0.5
121,553	-				+0.2
121,556	+				+0.7
121,653	+				+1.4
121,698	+				-0.5
121,715	+				-0.4
121,715	+				-2.3
121,715	+				+0.4
121,715	+				+0.9
121,716	-				+2.2
121,716	-				-1.2
121,717	+				+0.7
121,717	+				-0.8
121,717	+				+0.9
121,717	+				+0.6
121,727	+				+0.8
121,764	+				+0.4
121,858	+				-0.6
121,885	+				-0.9
121,886	-				+0.4
121,886	-				+1.0
121,918	-				+2.4
121,942	-				-2.8
121,942	-				+0.2
122,006	-				-1.8
122,142	+		HMPREF1078_RS04450	0.12	+1.2
122,143	-		HMPREF1078_RS04450	0.12	-0.3
122,158	-		HMPREF1078_RS04450	0.13	+1.2
122,176	+		HMPREF1078_RS04450	0.13	-0.2
122,226	-		HMPREF1078_RS04450	0.15	-1.2
122,226	-		HMPREF1078_RS04450	0.15	-0.6
122,452	-		HMPREF1078_RS04450	0.22	+0.0
122,452	-		HMPREF1078_RS04450	0.22	-1.4
122,452	-		HMPREF1078_RS04450	0.22	-1.1
122,471	-		HMPREF1078_RS04450	0.23	+0.4
122,474	+		HMPREF1078_RS04450	0.23	+0.2
122,519	-		HMPREF1078_RS04450	0.24	-0.7
122,519	-		HMPREF1078_RS04450	0.24	+1.0
122,520	+		HMPREF1078_RS04450	0.24	-0.8
122,521	-		HMPREF1078_RS04450	0.24	+1.1
122,521	-		HMPREF1078_RS04450	0.24	+0.4
122,553	+		HMPREF1078_RS04450	0.25	-0.7
122,553	+		HMPREF1078_RS04450	0.25	-0.2
122,558	-		HMPREF1078_RS04450	0.25	-1.1
122,575	-		HMPREF1078_RS04450	0.26	+0.6
122,595	+		HMPREF1078_RS04450	0.27	+0.5
122,595	+		HMPREF1078_RS04450	0.27	+1.1
122,596	-		HMPREF1078_RS04450	0.27	-0.3
122,596	-		HMPREF1078_RS04450	0.27	-0.4
122,607	+		HMPREF1078_RS04450	0.27	-0.9
122,608	-		HMPREF1078_RS04450	0.27	-1.1
122,611	+		HMPREF1078_RS04450	0.27	-0.6
122,612	-		HMPREF1078_RS04450	0.27	-0.6
122,663	+		HMPREF1078_RS04450	0.29	-0.5
122,696	+		HMPREF1078_RS04450	0.30	-0.0
122,700	+		HMPREF1078_RS04450	0.30	-0.4
122,749	+		HMPREF1078_RS04450	0.31	+0.7
122,754	+		HMPREF1078_RS04450	0.32	+0.4
122,795	+		HMPREF1078_RS04450	0.33	+0.6
122,795	+		HMPREF1078_RS04450	0.33	+0.7
122,795	+		HMPREF1078_RS04450	0.33	+0.6
122,796	-		HMPREF1078_RS04450	0.33	+0.7
122,810	+		HMPREF1078_RS04450	0.33	+0.1
122,824	-		HMPREF1078_RS04450	0.34	+0.0
122,890	+		HMPREF1078_RS04450	0.36	-0.6
122,920	+		HMPREF1078_RS04450	0.37	+0.5
122,921	-		HMPREF1078_RS04450	0.37	+2.2
122,994	-		HMPREF1078_RS04450	0.39	+0.2
122,994	-		HMPREF1078_RS04450	0.39	-0.2
123,033	+		HMPREF1078_RS04450	0.40	+1.0
123,033	+		HMPREF1078_RS04450	0.40	-0.1
123,046	+		HMPREF1078_RS04450	0.41	+1.2
123,057	+		HMPREF1078_RS04450	0.41	+0.2
123,068	+		HMPREF1078_RS04450	0.42	-0.8
123,112	+		HMPREF1078_RS04450	0.43	+0.4
123,112	+		HMPREF1078_RS04450	0.43	+1.8
123,114	+		HMPREF1078_RS04450	0.43	-0.8
123,115	-		HMPREF1078_RS04450	0.43	+0.5
123,177	+		HMPREF1078_RS04450	0.45	-0.0
123,264	-		HMPREF1078_RS04450	0.48	+0.1
123,269	-		HMPREF1078_RS04450	0.48	+0.1
123,275	-		HMPREF1078_RS04450	0.48	-0.5
123,307	+		HMPREF1078_RS04450	0.49	-0.6
123,310	-		HMPREF1078_RS04450	0.49	-0.4
123,319	+		HMPREF1078_RS04450	0.49	+0.4
123,319	+		HMPREF1078_RS04450	0.49	+0.8
123,347	-		HMPREF1078_RS04450	0.50	+1.2
123,399	+		HMPREF1078_RS04450	0.52	+0.6
123,426	+		HMPREF1078_RS04450	0.53	+1.5
123,440	+		HMPREF1078_RS04450	0.53	+1.0
123,440	+		HMPREF1078_RS04450	0.53	+0.2
123,441	-		HMPREF1078_RS04450	0.53	+1.2
123,458	+		HMPREF1078_RS04450	0.54	-1.9
123,458	+		HMPREF1078_RS04450	0.54	+0.3
123,459	-		HMPREF1078_RS04450	0.54	-0.8
123,470	+		HMPREF1078_RS04450	0.54	-1.1
123,471	-		HMPREF1078_RS04450	0.54	-0.7
123,471	-		HMPREF1078_RS04450	0.54	+0.6
123,510	+		HMPREF1078_RS04450	0.55	+0.3
123,511	-		HMPREF1078_RS04450	0.55	+0.6
123,514	+		HMPREF1078_RS04450	0.56	+0.4
123,584	+		HMPREF1078_RS04450	0.58	+0.7
123,602	-		HMPREF1078_RS04450	0.58	+2.1
123,602	-		HMPREF1078_RS04450	0.58	-0.8
123,638	-		HMPREF1078_RS04450	0.59	+0.8
123,638	-		HMPREF1078_RS04450	0.59	-1.5
123,640	+		HMPREF1078_RS04450	0.59	-2.8
123,741	-		HMPREF1078_RS04450	0.63	+0.1
123,833	-		HMPREF1078_RS04450	0.66	-1.5
123,895	+		HMPREF1078_RS04450	0.67	-1.8
123,895	+		HMPREF1078_RS04450	0.67	-0.8
123,896	-		HMPREF1078_RS04450	0.68	-0.9
123,896	-		HMPREF1078_RS04450	0.68	+0.6
123,896	-		HMPREF1078_RS04450	0.68	+1.0
123,896	-		HMPREF1078_RS04450	0.68	-0.4
123,948	+		HMPREF1078_RS04450	0.69	+0.5
123,948	+		HMPREF1078_RS04450	0.69	+3.0
123,955	+		HMPREF1078_RS04450	0.69	-0.1
123,960	-		HMPREF1078_RS04450	0.70	-1.0
123,978	+		HMPREF1078_RS04450	0.70	+0.7
123,979	-		HMPREF1078_RS04450	0.70	+0.8
124,048	-		HMPREF1078_RS04450	0.72	+0.4
124,057	+		HMPREF1078_RS04450	0.73	-0.2
124,064	+		HMPREF1078_RS04450	0.73	-0.3
124,065	-		HMPREF1078_RS04450	0.73	+0.5
124,066	+		HMPREF1078_RS04450	0.73	-0.6
124,067	-		HMPREF1078_RS04450	0.73	-1.2
124,067	-		HMPREF1078_RS04450	0.73	-2.3
124,071	-		HMPREF1078_RS04450	0.73	-0.3
124,131	+		HMPREF1078_RS04450	0.75	-1.4
124,132	-		HMPREF1078_RS04450	0.75	-1.0
124,170	+		HMPREF1078_RS04450	0.76	-0.6
124,273	+		HMPREF1078_RS04450	0.79	+1.0
124,273	+		HMPREF1078_RS04450	0.79	+0.7
124,336	+		HMPREF1078_RS04450	0.81	+1.0
124,338	+		HMPREF1078_RS04450	0.81	+0.8
124,456	+		HMPREF1078_RS04450	0.85	-0.6
124,457	-		HMPREF1078_RS04450	0.85	+0.5
124,459	-		HMPREF1078_RS04450	0.85	+0.6
124,546	-		HMPREF1078_RS04450	0.88	-0.0
124,605	+		HMPREF1078_RS04450	0.90	-0.9
124,605	-		HMPREF1078_RS04450	0.90	-0.8
124,605	-		HMPREF1078_RS04450	0.90	-0.2
124,699	-				-0.8
124,737	-				+0.9
124,744	-				+0.7
124,764	-				-2.3
124,764	-				-0.8
124,764	-				+0.3
124,799	+				+0.3
124,799	+				+1.1
124,799	+				-0.3
124,823	+				-2.0
124,823	+				+0.9
124,824	-				-1.1
124,827	+				+0.4
124,828	-				-2.0
124,877	+				-1.2
124,877	+				-0.1
124,878	-				+0.6
124,878	-				+0.0
124,878	-				+0.1
124,881	-				+0.7
124,881	-				+0.6
124,944	+				-1.2
124,948	-				-0.9
124,948	-				-1.6
124,952	+				-1.6
124,978	+				+1.2
124,978	+				+0.9
124,979	-				+0.1
124,992	+				+0.6
125,035	+				-0.3
125,070	+				-1.5
125,071	-				+0.3
125,073	+				-1.0
125,073	+				-2.4
125,080	-				-0.7
125,082	+				+0.2
125,082	+				-0.4
125,083	-				-0.2
125,088	-				+0.8
125,088	-				-3.5
125,098	+				-1.5
125,098	+				+0.2
125,138	+				-1.1
125,138	+				-1.0
125,138	+				-0.8
125,139	-				+0.7
125,216	-				-0.9
125,217	+				-0.3
125,294	+				+0.2
125,295	-				+0.7
125,321	-				-0.3
125,321	-				-0.1
125,329	-		HMPREF1078_RS04455	0.11	-1.8
125,388	+		HMPREF1078_RS04455	0.29	+0.7
125,427	+		HMPREF1078_RS04455	0.40	-0.8
125,433	+		HMPREF1078_RS04455	0.42	+0.5
125,434	-		HMPREF1078_RS04455	0.43	+1.0
125,478	+		HMPREF1078_RS04455	0.56	+0.2
125,588	+		HMPREF1078_RS04455	0.88	+0.2
125,592	-		HMPREF1078_RS04455	0.90	+0.5
125,683	-				-1.5
125,705	+				+0.1
125,705	+				+0.1
125,706	-				+0.9
125,803	-				-1.1
125,825	+				-0.5