Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04370

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
103,678	+		HMPREF1078_RS04360	0.15	-0.2
103,678	+		HMPREF1078_RS04360	0.15	-0.5
103,692	+		HMPREF1078_RS04360	0.17	-1.6
103,758	+		HMPREF1078_RS04360	0.29	+0.0
103,836	+		HMPREF1078_RS04360	0.43	+2.2
103,836	+		HMPREF1078_RS04360	0.43	-0.9
103,900	-		HMPREF1078_RS04360	0.54	+0.2
103,903	-		HMPREF1078_RS04360	0.55	-0.9
103,903	-		HMPREF1078_RS04360	0.55	-0.3
103,907	+		HMPREF1078_RS04360	0.56	-1.6
104,027	-		HMPREF1078_RS04360	0.77	-0.1
104,028	+		HMPREF1078_RS04360	0.77	-0.4
104,082	+		HMPREF1078_RS04360	0.87	+1.6
104,109	-				-0.3
104,133	-				+0.7
104,326	+		HMPREF1078_RS04365	0.47	-2.5
104,357	+		HMPREF1078_RS04365	0.56	-2.9
104,357	+		HMPREF1078_RS04365	0.56	-2.0
104,358	-		HMPREF1078_RS04365	0.56	-1.7
104,414	+		HMPREF1078_RS04365	0.72	-1.9
104,414	+		HMPREF1078_RS04365	0.72	-2.3
104,415	-		HMPREF1078_RS04365	0.72	+0.8
104,415	-		HMPREF1078_RS04365	0.72	-1.8
104,415	-		HMPREF1078_RS04365	0.72	-0.6
104,415	-		HMPREF1078_RS04365	0.72	-3.0
104,475	+		HMPREF1078_RS04365	0.89	-1.6
104,514	-				-0.0
104,514	-				-0.9
104,526	+				+0.5
104,526	+				+0.1
104,526	+				-1.4
104,630	+				-1.3
104,637	+				+0.3
106,025	+		HMPREF1078_RS04370	0.76	-2.1
106,061	+		HMPREF1078_RS04370	0.78	-0.6
106,082	+		HMPREF1078_RS04370	0.79	-0.3
106,463	+				-0.6
106,517	+				+0.0
106,517	+				-0.9
106,517	+				+0.6
106,550	+				+0.0
106,550	+				-0.8
106,550	+				+0.6
106,550	+				-0.5
106,551	-				-0.2
106,551	-				-2.3
106,551	-				-0.9
106,555	+				-1.8
106,556	-				-1.3
106,556	-				-0.4
106,576	+		HMPREF1078_RS04375	0.10	-1.1
106,576	+		HMPREF1078_RS04375	0.10	-0.9
106,577	-		HMPREF1078_RS04375	0.11	-1.1
106,577	-		HMPREF1078_RS04375	0.11	-1.5
106,577	-		HMPREF1078_RS04375	0.11	-1.6
106,594	+		HMPREF1078_RS04375	0.17	-0.0
106,596	-		HMPREF1078_RS04375	0.18	+0.0
106,596	-		HMPREF1078_RS04375	0.18	-0.2
106,598	+		HMPREF1078_RS04375	0.19	-0.3
106,598	+		HMPREF1078_RS04375	0.19	-0.0
106,599	-		HMPREF1078_RS04375	0.19	+0.5
106,664	+		HMPREF1078_RS04375	0.44	-0.3
106,682	+		HMPREF1078_RS04375	0.50	-1.0
106,682	+		HMPREF1078_RS04375	0.50	+0.8
106,682	+		HMPREF1078_RS04375	0.50	-3.1
106,682	+		HMPREF1078_RS04375	0.50	+0.9
106,682	+		HMPREF1078_RS04375	0.50	-3.7
106,682	+		HMPREF1078_RS04375	0.50	+0.7
106,683	-		HMPREF1078_RS04375	0.51	-0.2
106,683	-		HMPREF1078_RS04375	0.51	-0.2
106,683	-		HMPREF1078_RS04375	0.51	-0.1
106,683	-		HMPREF1078_RS04375	0.51	-0.8
106,686	+		HMPREF1078_RS04375	0.52	-0.7
106,730	-		HMPREF1078_RS04375	0.69	-1.2
106,737	+		HMPREF1078_RS04375	0.71	+0.5
106,737	+		HMPREF1078_RS04375	0.71	-0.3
106,737	+		HMPREF1078_RS04375	0.71	-1.1
106,795	+				-1.8
106,832	-				-1.4
106,832	-				+1.1
106,833	+				+0.3
106,833	+				-3.0
106,833	+				-0.8
106,833	+				-0.5
106,847	+				-0.7
106,848	-				-1.7
106,851	-				-1.1
106,870	-				-0.7
106,902	-				+0.2
106,908	-				+0.1
106,908	-				+1.1
106,991	-				+0.5
107,029	+				+0.9
107,029	+				+0.8
107,034	+				-0.1
107,034	+				+0.1
107,035	-				-0.0
107,035	-				-0.2
107,035	-				-2.5
107,041	+				-1.7
107,042	-				-0.3
107,047	-				+1.7
107,088	+				+0.1
107,088	+				-1.6
107,089	-				+1.1
107,092	-				+0.5
107,101	-				-2.4
107,101	-				-1.1
107,101	-				-0.6
107,122	+				-0.1
107,122	+				-0.7
107,122	+				-0.0
107,122	+				+0.9
107,122	+				+0.9
107,123	-				+1.5
107,123	-				+0.9
107,129	+				-1.4
107,129	+				-0.8
107,130	-				-1.3
107,130	-				-0.1
107,133	+				-1.2
107,133	+				-0.1
107,133	+				+0.5
107,134	-				-0.3
107,160	+		HMPREF1078_RS20090	0.15	+0.3
107,161	-		HMPREF1078_RS20090	0.15	-0.8
107,168	+		HMPREF1078_RS20090	0.17	+0.3
107,168	+		HMPREF1078_RS20090	0.17	+0.7
107,169	-		HMPREF1078_RS20090	0.17	-1.5
107,169	-		HMPREF1078_RS20090	0.17	+0.2
107,172	-		HMPREF1078_RS20090	0.18	+0.0
107,175	-		HMPREF1078_RS20090	0.19	+0.2
107,199	+		HMPREF1078_RS20090	0.25	-1.3
107,199	+		HMPREF1078_RS20090	0.25	-1.4
107,231	+		HMPREF1078_RS20090	0.33	+0.1
107,232	-		HMPREF1078_RS20090	0.34	+0.7
107,232	-		HMPREF1078_RS20090	0.34	-2.5
107,304	+		HMPREF1078_RS20090	0.52	-0.8
107,304	+		HMPREF1078_RS20090	0.52	-0.7
107,304	+		HMPREF1078_RS20090	0.52	+0.5
107,305	-		HMPREF1078_RS20090	0.52	+0.2
107,305	-		HMPREF1078_RS20090	0.52	+0.1
107,343	+		HMPREF1078_RS20090	0.62	+0.5
107,351	-		HMPREF1078_RS20090	0.64	+0.7
107,419	+		HMPREF1078_RS20090	0.81	-1.0