Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04175

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
47,300	+		HMPREF1078_RS04165	0.69	-1.2
47,302	+		HMPREF1078_RS04165	0.69	-2.6
47,324	+		HMPREF1078_RS04165	0.72	+0.2
47,324	+		HMPREF1078_RS04165	0.72	-1.6
47,324	+		HMPREF1078_RS04165	0.72	+0.2
47,325	-		HMPREF1078_RS04165	0.72	-2.3
47,397	-		HMPREF1078_RS04165	0.80	-0.9
47,397	-		HMPREF1078_RS04165	0.80	+1.2
47,412	-		HMPREF1078_RS04165	0.82	+0.0
47,483	+				+0.8
47,485	+				+0.4
47,485	+				-0.8
47,485	+				-0.8
47,486	-				+0.3
47,486	-				+0.5
47,486	-				-0.3
47,624	-				-0.1
47,634	-				+2.4
47,673	+				-1.9
47,679	-				-1.1
47,695	+				+0.8
47,696	-				+0.7
47,701	+				+0.1
47,717	+				-1.8
47,718	-				+0.6
47,759	-				-0.3
48,059	+		HMPREF1078_RS04170	0.82	+2.2
48,076	+		HMPREF1078_RS04170	0.86	+1.2
48,076	+		HMPREF1078_RS04170	0.86	+0.7
48,076	+		HMPREF1078_RS04170	0.86	-0.7
48,115	-				-0.9
48,126	+				-0.2
48,127	-				+0.9
48,127	-				+1.4
48,150	-				-0.0
48,150	-				-0.2
48,150	-				+1.8
48,184	+				+0.3
48,185	-				-0.1
48,192	+				-0.4
48,192	+				+0.3
48,192	+				+1.0
48,193	-				+1.2
48,254	-				+0.6
48,385	+				-0.2
48,385	+				-2.8
48,386	-				-1.1
48,386	-				-2.4
48,386	-				-0.3
48,570	+		HMPREF1078_RS04175	0.17	-0.5
48,571	-		HMPREF1078_RS04175	0.17	-1.1
48,735	+		HMPREF1078_RS04175	0.24	+1.1
48,736	-		HMPREF1078_RS04175	0.25	+0.7
48,849	+		HMPREF1078_RS04175	0.29	+0.3
48,895	+		HMPREF1078_RS04175	0.31	-1.9
48,994	-		HMPREF1078_RS04175	0.36	+0.2
49,021	-		HMPREF1078_RS04175	0.37	+1.2
49,033	+		HMPREF1078_RS04175	0.37	-0.5
49,041	-		HMPREF1078_RS04175	0.38	+0.5
49,041	-		HMPREF1078_RS04175	0.38	-0.6
49,152	+		HMPREF1078_RS04175	0.42	+1.5
49,153	-		HMPREF1078_RS04175	0.42	+0.4
49,218	+		HMPREF1078_RS04175	0.45	+1.3
49,218	+		HMPREF1078_RS04175	0.45	+1.1
49,219	-		HMPREF1078_RS04175	0.45	-0.0
49,279	+		HMPREF1078_RS04175	0.48	-0.6
49,362	-		HMPREF1078_RS04175	0.51	-0.5
49,407	+		HMPREF1078_RS04175	0.53	-0.1
49,408	-		HMPREF1078_RS04175	0.53	-1.3
49,436	+		HMPREF1078_RS04175	0.55	+0.6
49,436	+		HMPREF1078_RS04175	0.55	+1.1
49,436	+		HMPREF1078_RS04175	0.55	-1.1
49,456	+		HMPREF1078_RS04175	0.55	-2.9
49,471	+		HMPREF1078_RS04175	0.56	+1.3
49,471	+		HMPREF1078_RS04175	0.56	+0.1
49,472	-		HMPREF1078_RS04175	0.56	+0.4
49,474	+		HMPREF1078_RS04175	0.56	+0.1
49,475	-		HMPREF1078_RS04175	0.56	+0.9
49,520	-		HMPREF1078_RS04175	0.58	+0.0
49,544	-		HMPREF1078_RS04175	0.59	-0.8
49,578	+		HMPREF1078_RS04175	0.61	-0.0
49,589	+		HMPREF1078_RS04175	0.61	-0.0
49,598	+		HMPREF1078_RS04175	0.62	+0.5
49,599	-		HMPREF1078_RS04175	0.62	+0.5
49,599	-		HMPREF1078_RS04175	0.62	+0.8
49,622	-		HMPREF1078_RS04175	0.63	-0.4
49,622	-		HMPREF1078_RS04175	0.63	+0.3
49,622	-		HMPREF1078_RS04175	0.63	-0.5
49,624	-		HMPREF1078_RS04175	0.63	+0.1
49,648	+		HMPREF1078_RS04175	0.64	+0.4
49,649	-		HMPREF1078_RS04175	0.64	+1.3
49,650	+		HMPREF1078_RS04175	0.64	-1.3
49,650	+		HMPREF1078_RS04175	0.64	+0.1
49,655	+		HMPREF1078_RS04175	0.64	-0.0
49,666	-		HMPREF1078_RS04175	0.65	-0.4
49,785	+		HMPREF1078_RS04175	0.70	-2.3
49,785	+		HMPREF1078_RS04175	0.70	+0.6
49,786	-		HMPREF1078_RS04175	0.70	+0.2
49,810	-		HMPREF1078_RS04175	0.71	+0.2
49,962	+		HMPREF1078_RS04175	0.77	+0.2
50,068	+		HMPREF1078_RS04175	0.82	+0.4
50,068	+		HMPREF1078_RS04175	0.82	+1.0
50,123	-		HMPREF1078_RS04175	0.84	+0.2
50,488	+				+0.0
50,488	+				-0.1
50,496	+				-1.7
50,496	+				+1.5
50,575	+				+0.4
50,591	+				-0.3
50,596	+				+1.3
50,601	+				+0.9
50,602	-				-1.0
50,602	-				+0.2
50,623	+				+0.3
50,623	+				+0.9
50,623	+				+0.8
50,623	+				-0.5
50,623	+				+0.2
50,624	-				+0.6
50,624	-				-0.0
50,624	-				-0.8
50,624	-				+0.7
50,624	-				-0.4
50,624	-				-2.4
50,624	-				+0.9
50,628	-				+0.4
50,628	-				-0.3
50,686	-				+0.8
50,695	-				-1.1
50,755	-				+0.7
50,944	-		HMPREF1078_RS04180	0.14	-0.1
50,950	+		HMPREF1078_RS04180	0.14	+0.3
50,950	+		HMPREF1078_RS04180	0.14	+1.0
50,954	+		HMPREF1078_RS04180	0.14	+0.5
51,036	+		HMPREF1078_RS04180	0.17	-0.9
51,042	-		HMPREF1078_RS04180	0.17	-1.9
51,202	-		HMPREF1078_RS04180	0.24	+0.7
51,290	-		HMPREF1078_RS04180	0.28	-1.4
51,312	+		HMPREF1078_RS04180	0.28	-1.7
51,312	+		HMPREF1078_RS04180	0.28	-1.7
51,313	-		HMPREF1078_RS04180	0.28	+0.4
51,314	+		HMPREF1078_RS04180	0.29	-1.3
51,343	-		HMPREF1078_RS04180	0.30	+0.6
51,345	+		HMPREF1078_RS04180	0.30	-0.2
51,345	+		HMPREF1078_RS04180	0.30	+0.4