Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS03045

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS03040 and HMPREF1078_RS03045 are separated by 42 nucleotidesHMPREF1078_RS03045 and HMPREF1078_RS03050 overlap by 8 nucleotides HMPREF1078_RS03040: HMPREF1078_RS03040 - hypothetical protein, at 715,755 to 717,767 _RS03040 HMPREF1078_RS03045: HMPREF1078_RS03045 - hypothetical protein, at 717,810 to 719,735 _RS03045 HMPREF1078_RS03050: HMPREF1078_RS03050 - hypothetical protein, at 719,728 to 730,944 _RS03050 Position (kb) 717 718 719 720Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 716.856 kb on - strand, within HMPREF1078_RS03040at 716.883 kb on - strand, within HMPREF1078_RS03040at 716.937 kb on - strand, within HMPREF1078_RS03040at 717.041 kb on - strand, within HMPREF1078_RS03040at 717.041 kb on - strand, within HMPREF1078_RS03040at 717.155 kb on - strand, within HMPREF1078_RS03040at 717.188 kb on + strand, within HMPREF1078_RS03040at 717.292 kb on + strand, within HMPREF1078_RS03040at 717.293 kb on - strand, within HMPREF1078_RS03040at 717.293 kb on - strand, within HMPREF1078_RS03040at 717.329 kb on + strand, within HMPREF1078_RS03040at 717.330 kb on - strand, within HMPREF1078_RS03040at 717.330 kb on - strand, within HMPREF1078_RS03040at 717.330 kb on - strand, within HMPREF1078_RS03040at 717.390 kb on + strand, within HMPREF1078_RS03040at 717.391 kb on - strand, within HMPREF1078_RS03040at 717.407 kb on - strand, within HMPREF1078_RS03040at 717.418 kb on - strand, within HMPREF1078_RS03040at 717.429 kb on + strand, within HMPREF1078_RS03040at 717.509 kb on + strand, within HMPREF1078_RS03040at 717.510 kb on - strand, within HMPREF1078_RS03040at 717.510 kb on - strand, within HMPREF1078_RS03040at 717.510 kb on - strand, within HMPREF1078_RS03040at 717.516 kb on - strand, within HMPREF1078_RS03040at 717.552 kb on + strand, within HMPREF1078_RS03040at 717.552 kb on + strand, within HMPREF1078_RS03040at 717.614 kb on + strandat 717.694 kb on + strandat 717.713 kb on - strandat 717.725 kb on - strandat 717.728 kb on + strandat 717.729 kb on - strandat 717.759 kb on - strandat 717.759 kb on - strandat 717.759 kb on - strandat 717.764 kb on - strandat 717.764 kb on - strandat 717.811 kb on + strandat 717.828 kb on + strandat 717.828 kb on + strandat 717.829 kb on - strandat 717.863 kb on + strandat 717.911 kb on + strandat 717.923 kb on + strandat 717.923 kb on + strandat 717.973 kb on - strandat 717.989 kb on - strandat 718.050 kb on - strand, within HMPREF1078_RS03045at 718.053 kb on - strand, within HMPREF1078_RS03045at 718.054 kb on + strand, within HMPREF1078_RS03045at 718.054 kb on + strand, within HMPREF1078_RS03045at 718.054 kb on + strand, within HMPREF1078_RS03045at 718.055 kb on - strand, within HMPREF1078_RS03045at 718.055 kb on - strand, within HMPREF1078_RS03045at 718.055 kb on - strand, within HMPREF1078_RS03045at 718.063 kb on - strand, within HMPREF1078_RS03045at 718.094 kb on - strand, within HMPREF1078_RS03045at 718.135 kb on - strand, within HMPREF1078_RS03045at 718.135 kb on - strand, within HMPREF1078_RS03045at 718.135 kb on - strand, within HMPREF1078_RS03045at 718.135 kb on - strand, within HMPREF1078_RS03045at 718.136 kb on + strand, within HMPREF1078_RS03045at 718.136 kb on + strand, within HMPREF1078_RS03045at 718.136 kb on + strand, within HMPREF1078_RS03045at 718.137 kb on - strand, within HMPREF1078_RS03045at 718.137 kb on - strand, within HMPREF1078_RS03045at 718.137 kb on - strand, within HMPREF1078_RS03045at 718.176 kb on + strand, within HMPREF1078_RS03045at 718.239 kb on - strand, within HMPREF1078_RS03045at 718.239 kb on - strand, within HMPREF1078_RS03045at 718.239 kb on - strand, within HMPREF1078_RS03045at 718.328 kb on + strand, within HMPREF1078_RS03045at 718.328 kb on + strand, within HMPREF1078_RS03045at 718.329 kb on - strand, within HMPREF1078_RS03045at 718.338 kb on - strand, within HMPREF1078_RS03045at 718.338 kb on - strand, within HMPREF1078_RS03045at 718.360 kb on - strand, within HMPREF1078_RS03045at 718.367 kb on - strand, within HMPREF1078_RS03045at 718.397 kb on - strand, within HMPREF1078_RS03045at 718.397 kb on - strand, within HMPREF1078_RS03045at 718.409 kb on + strand, within HMPREF1078_RS03045at 718.410 kb on - strand, within HMPREF1078_RS03045at 718.416 kb on + strand, within HMPREF1078_RS03045at 718.417 kb on - strand, within HMPREF1078_RS03045at 718.457 kb on + strand, within HMPREF1078_RS03045at 718.468 kb on + strand, within HMPREF1078_RS03045at 718.469 kb on - strand, within HMPREF1078_RS03045at 718.469 kb on - strand, within HMPREF1078_RS03045at 718.477 kb on - strand, within HMPREF1078_RS03045at 718.582 kb on - strand, within HMPREF1078_RS03045at 718.585 kb on + strand, within HMPREF1078_RS03045at 718.601 kb on + strand, within HMPREF1078_RS03045at 718.629 kb on - strand, within HMPREF1078_RS03045at 718.645 kb on + strand, within HMPREF1078_RS03045at 718.660 kb on + strand, within HMPREF1078_RS03045at 718.660 kb on + strand, within HMPREF1078_RS03045at 718.660 kb on + strand, within HMPREF1078_RS03045at 718.660 kb on + strand, within HMPREF1078_RS03045at 718.661 kb on - strand, within HMPREF1078_RS03045at 718.661 kb on - strand, within HMPREF1078_RS03045at 718.701 kb on + strand, within HMPREF1078_RS03045at 718.726 kb on + strand, within HMPREF1078_RS03045at 718.727 kb on - strand, within HMPREF1078_RS03045at 718.735 kb on + strand, within HMPREF1078_RS03045at 718.736 kb on - strand, within HMPREF1078_RS03045at 718.741 kb on + strand, within HMPREF1078_RS03045at 718.741 kb on + strand, within HMPREF1078_RS03045at 718.760 kb on + strand, within HMPREF1078_RS03045at 718.760 kb on + strand, within HMPREF1078_RS03045at 718.761 kb on - strand, within HMPREF1078_RS03045at 718.761 kb on - strand, within HMPREF1078_RS03045at 718.804 kb on - strand, within HMPREF1078_RS03045at 718.827 kb on - strand, within HMPREF1078_RS03045at 718.867 kb on + strand, within HMPREF1078_RS03045at 718.887 kb on + strand, within HMPREF1078_RS03045at 718.888 kb on - strand, within HMPREF1078_RS03045at 718.969 kb on + strand, within HMPREF1078_RS03045at 719.044 kb on + strand, within HMPREF1078_RS03045at 719.058 kb on - strand, within HMPREF1078_RS03045at 719.114 kb on + strand, within HMPREF1078_RS03045at 719.115 kb on - strand, within HMPREF1078_RS03045at 719.119 kb on + strand, within HMPREF1078_RS03045at 719.119 kb on + strand, within HMPREF1078_RS03045at 719.120 kb on - strand, within HMPREF1078_RS03045at 719.164 kb on - strand, within HMPREF1078_RS03045at 719.188 kb on + strand, within HMPREF1078_RS03045at 719.188 kb on + strand, within HMPREF1078_RS03045at 719.189 kb on - strand, within HMPREF1078_RS03045at 719.193 kb on - strand, within HMPREF1078_RS03045at 719.246 kb on - strand, within HMPREF1078_RS03045at 719.336 kb on - strand, within HMPREF1078_RS03045at 719.388 kb on - strand, within HMPREF1078_RS03045at 719.492 kb on + strand, within HMPREF1078_RS03045at 719.497 kb on + strand, within HMPREF1078_RS03045at 719.498 kb on - strand, within HMPREF1078_RS03045at 719.498 kb on - strand, within HMPREF1078_RS03045at 719.498 kb on - strand, within HMPREF1078_RS03045at 719.569 kb on + strandat 719.569 kb on + strandat 719.569 kb on + strandat 719.570 kb on - strandat 719.570 kb on - strandat 719.606 kb on + strandat 719.666 kb on + strandat 719.711 kb on + strandat 719.741 kb on - strandat 719.833 kb on - strandat 719.837 kb on + strandat 719.838 kb on - strandat 719.842 kb on - strandat 719.919 kb on + strandat 719.935 kb on - strandat 719.957 kb on + strandat 719.987 kb on + strandat 719.987 kb on + strandat 719.987 kb on + strandat 720.000 kb on - strandat 720.007 kb on - strandat 720.009 kb on - strandat 720.009 kb on - strandat 720.021 kb on + strandat 720.022 kb on - strandat 720.053 kb on + strandat 720.148 kb on + strandat 720.157 kb on + strandat 720.157 kb on + strandat 720.158 kb on - strandat 720.161 kb on + strandat 720.161 kb on + strandat 720.162 kb on - strandat 720.177 kb on - strandat 720.181 kb on + strandat 720.182 kb on - strandat 720.207 kb on - strandat 720.230 kb on + strandat 720.249 kb on + strandat 720.320 kb on + strandat 720.321 kb on - strandat 720.321 kb on - strandat 720.321 kb on - strandat 720.324 kb on + strandat 720.325 kb on - strandat 720.528 kb on - strandat 720.555 kb on + strandat 720.650 kb on - strandat 720.653 kb on + strandat 720.654 kb on - strandat 720.672 kb on - strandat 720.708 kb on + strandat 720.708 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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716,856 - HMPREF1078_RS03040 0.55 -2.4
716,883 - HMPREF1078_RS03040 0.56 +2.4
716,937 - HMPREF1078_RS03040 0.59 +0.4
717,041 - HMPREF1078_RS03040 0.64 -1.1
717,041 - HMPREF1078_RS03040 0.64 -0.6
717,155 - HMPREF1078_RS03040 0.70 -2.1
717,188 + HMPREF1078_RS03040 0.71 -1.0
717,292 + HMPREF1078_RS03040 0.76 +4.7
717,293 - HMPREF1078_RS03040 0.76 -2.7
717,293 - HMPREF1078_RS03040 0.76 -0.9
717,329 + HMPREF1078_RS03040 0.78 -0.7
717,330 - HMPREF1078_RS03040 0.78 +0.8
717,330 - HMPREF1078_RS03040 0.78 -1.6
717,330 - HMPREF1078_RS03040 0.78 -2.3
717,390 + HMPREF1078_RS03040 0.81 +2.0
717,391 - HMPREF1078_RS03040 0.81 +1.2
717,407 - HMPREF1078_RS03040 0.82 -0.1
717,418 - HMPREF1078_RS03040 0.83 -0.9
717,429 + HMPREF1078_RS03040 0.83 +0.5
717,509 + HMPREF1078_RS03040 0.87 -1.1
717,510 - HMPREF1078_RS03040 0.87 -0.1
717,510 - HMPREF1078_RS03040 0.87 +1.9
717,510 - HMPREF1078_RS03040 0.87 +0.4
717,516 - HMPREF1078_RS03040 0.87 +0.2
717,552 + HMPREF1078_RS03040 0.89 -1.0
717,552 + HMPREF1078_RS03040 0.89 +1.2
717,614 + -0.1
717,694 + -2.1
717,713 - +1.2
717,725 - -0.3
717,728 + +0.9
717,729 - +1.3
717,759 - -0.1
717,759 - -0.9
717,759 - -1.8
717,764 - -0.2
717,764 - -0.4
717,811 + +0.8
717,828 + +1.8
717,828 + -0.3
717,829 - -1.0
717,863 + -0.9
717,911 + -0.7
717,923 + -1.2
717,923 + +0.4
717,973 - -2.1
717,989 - +0.4
718,050 - HMPREF1078_RS03045 0.12 +0.4
718,053 - HMPREF1078_RS03045 0.13 +2.3
718,054 + HMPREF1078_RS03045 0.13 -0.2
718,054 + HMPREF1078_RS03045 0.13 -1.3
718,054 + HMPREF1078_RS03045 0.13 -1.5
718,055 - HMPREF1078_RS03045 0.13 -1.5
718,055 - HMPREF1078_RS03045 0.13 +0.3
718,055 - HMPREF1078_RS03045 0.13 +0.1
718,063 - HMPREF1078_RS03045 0.13 -1.2
718,094 - HMPREF1078_RS03045 0.15 -0.6
718,135 - HMPREF1078_RS03045 0.17 -0.5
718,135 - HMPREF1078_RS03045 0.17 -0.1
718,135 - HMPREF1078_RS03045 0.17 -1.9
718,135 - HMPREF1078_RS03045 0.17 -0.2
718,136 + HMPREF1078_RS03045 0.17 -0.1
718,136 + HMPREF1078_RS03045 0.17 +0.2
718,136 + HMPREF1078_RS03045 0.17 +0.5
718,137 - HMPREF1078_RS03045 0.17 -2.4
718,137 - HMPREF1078_RS03045 0.17 +4.2
718,137 - HMPREF1078_RS03045 0.17 -2.0
718,176 + HMPREF1078_RS03045 0.19 -1.7
718,239 - HMPREF1078_RS03045 0.22 -0.1
718,239 - HMPREF1078_RS03045 0.22 +0.4
718,239 - HMPREF1078_RS03045 0.22 -1.2
718,328 + HMPREF1078_RS03045 0.27 -1.5
718,328 + HMPREF1078_RS03045 0.27 -0.7
718,329 - HMPREF1078_RS03045 0.27 +0.7
718,338 - HMPREF1078_RS03045 0.27 -0.7
718,338 - HMPREF1078_RS03045 0.27 +0.7
718,360 - HMPREF1078_RS03045 0.29 -0.9
718,367 - HMPREF1078_RS03045 0.29 -1.2
718,397 - HMPREF1078_RS03045 0.30 -0.5
718,397 - HMPREF1078_RS03045 0.30 -1.6
718,409 + HMPREF1078_RS03045 0.31 -0.8
718,410 - HMPREF1078_RS03045 0.31 -1.4
718,416 + HMPREF1078_RS03045 0.31 +0.2
718,417 - HMPREF1078_RS03045 0.32 -2.0
718,457 + HMPREF1078_RS03045 0.34 +1.2
718,468 + HMPREF1078_RS03045 0.34 -0.8
718,469 - HMPREF1078_RS03045 0.34 -2.0
718,469 - HMPREF1078_RS03045 0.34 -0.9
718,477 - HMPREF1078_RS03045 0.35 -0.6
718,582 - HMPREF1078_RS03045 0.40 -1.3
718,585 + HMPREF1078_RS03045 0.40 +0.7
718,601 + HMPREF1078_RS03045 0.41 +0.4
718,629 - HMPREF1078_RS03045 0.43 +0.1
718,645 + HMPREF1078_RS03045 0.43 -1.3
718,660 + HMPREF1078_RS03045 0.44 -0.4
718,660 + HMPREF1078_RS03045 0.44 +0.7
718,660 + HMPREF1078_RS03045 0.44 +1.1
718,660 + HMPREF1078_RS03045 0.44 +0.1
718,661 - HMPREF1078_RS03045 0.44 +0.7
718,661 - HMPREF1078_RS03045 0.44 +0.9
718,701 + HMPREF1078_RS03045 0.46 -0.6
718,726 + HMPREF1078_RS03045 0.48 +0.1
718,727 - HMPREF1078_RS03045 0.48 -2.9
718,735 + HMPREF1078_RS03045 0.48 +0.1
718,736 - HMPREF1078_RS03045 0.48 +1.5
718,741 + HMPREF1078_RS03045 0.48 -2.4
718,741 + HMPREF1078_RS03045 0.48 -0.7
718,760 + HMPREF1078_RS03045 0.49 -0.8
718,760 + HMPREF1078_RS03045 0.49 +1.7
718,761 - HMPREF1078_RS03045 0.49 -1.4
718,761 - HMPREF1078_RS03045 0.49 -1.0
718,804 - HMPREF1078_RS03045 0.52 +0.3
718,827 - HMPREF1078_RS03045 0.53 -0.1
718,867 + HMPREF1078_RS03045 0.55 -1.0
718,887 + HMPREF1078_RS03045 0.56 -0.2
718,888 - HMPREF1078_RS03045 0.56 +0.3
718,969 + HMPREF1078_RS03045 0.60 +0.7
719,044 + HMPREF1078_RS03045 0.64 -1.2
719,058 - HMPREF1078_RS03045 0.65 -0.4
719,114 + HMPREF1078_RS03045 0.68 -0.7
719,115 - HMPREF1078_RS03045 0.68 +0.2
719,119 + HMPREF1078_RS03045 0.68 -1.0
719,119 + HMPREF1078_RS03045 0.68 +0.7
719,120 - HMPREF1078_RS03045 0.68 +0.6
719,164 - HMPREF1078_RS03045 0.70 +0.1
719,188 + HMPREF1078_RS03045 0.72 -0.1
719,188 + HMPREF1078_RS03045 0.72 -1.3
719,189 - HMPREF1078_RS03045 0.72 +0.2
719,193 - HMPREF1078_RS03045 0.72 +0.3
719,246 - HMPREF1078_RS03045 0.75 -2.2
719,336 - HMPREF1078_RS03045 0.79 -1.1
719,388 - HMPREF1078_RS03045 0.82 -0.4
719,492 + HMPREF1078_RS03045 0.87 -0.1
719,497 + HMPREF1078_RS03045 0.88 -0.0
719,498 - HMPREF1078_RS03045 0.88 +2.7
719,498 - HMPREF1078_RS03045 0.88 -0.4
719,498 - HMPREF1078_RS03045 0.88 -0.3
719,569 + +0.9
719,569 + +1.4
719,569 + -1.4
719,570 - +1.2
719,570 - -2.1
719,606 + -2.2
719,666 + -0.1
719,711 + -3.2
719,741 - -1.3
719,833 - -0.5
719,837 + +0.9
719,838 - +0.9
719,842 - +1.0
719,919 + +2.8
719,935 - -0.8
719,957 + +0.4
719,987 + -3.4
719,987 + -0.4
719,987 + +2.3
720,000 - -0.5
720,007 - -0.0
720,009 - +1.7
720,009 - +1.1
720,021 + -1.2
720,022 - -1.0
720,053 + +2.2
720,148 + -0.9
720,157 + +0.3
720,157 + +0.5
720,158 - -1.2
720,161 + -0.9
720,161 + -0.0
720,162 - +0.2
720,177 - -1.1
720,181 + +1.2
720,182 - +0.5
720,207 - +1.1
720,230 + +0.3
720,249 + -1.3
720,320 + -0.7
720,321 - +1.4
720,321 - +0.3
720,321 - +0.3
720,324 + -0.5
720,325 - -0.1
720,528 - -0.3
720,555 + -1.4
720,650 - +0.7
720,653 + +0.4
720,654 - +2.3
720,672 - -1.3
720,708 + +2.0
720,708 + +0.8

Or see this region's nucleotide sequence