Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02955 and HMPREF1078_RS02960 overlap by 4 nucleotides HMPREF1078_RS02960 and HMPREF1078_RS02965 are separated by 1 nucleotides HMPREF1078_RS02965 and HMPREF1078_RS02970 are separated by 2 nucleotides HMPREF1078_RS02970 and HMPREF1078_RS02975 are separated by 249 nucleotides
HMPREF1078_RS02955: HMPREF1078_RS02955 - hypothetical protein, at 700,617 to 701,078
_RS02955
HMPREF1078_RS02960: HMPREF1078_RS02960 - hypothetical protein, at 701,075 to 701,485
_RS02960
HMPREF1078_RS02965: HMPREF1078_RS02965 - phage holin family protein, at 701,487 to 701,942
_RS02965
HMPREF1078_RS02970: HMPREF1078_RS02970 - hypothetical protein, at 701,945 to 702,451
_RS02970
HMPREF1078_RS02975: HMPREF1078_RS02975 - LamG domain-containing protein, at 702,701 to 703,336
_RS02975
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 700.511 kb on + strand at 700.511 kb on + strand at 700.511 kb on + strand at 700.511 kb on + strand at 700.511 kb on + strand at 700.512 kb on - strand at 700.611 kb on - strand at 700.613 kb on + strand at 700.614 kb on - strand at 700.628 kb on + strand at 700.629 kb on - strand at 700.633 kb on + strand at 700.633 kb on + strand at 700.633 kb on + strand at 700.634 kb on - strand at 700.647 kb on + strand at 700.647 kb on + strand at 700.648 kb on - strand at 700.648 kb on - strand at 700.651 kb on + strand at 700.660 kb on - strand at 700.682 kb on - strand, within HMPREF1078_RS02955 at 700.695 kb on - strand, within HMPREF1078_RS02955 at 700.695 kb on - strand, within HMPREF1078_RS02955 at 700.698 kb on + strand, within HMPREF1078_RS02955 at 700.699 kb on - strand, within HMPREF1078_RS02955 at 700.735 kb on + strand, within HMPREF1078_RS02955 at 700.736 kb on - strand, within HMPREF1078_RS02955 at 700.736 kb on - strand, within HMPREF1078_RS02955 at 700.760 kb on + strand, within HMPREF1078_RS02955 at 700.760 kb on + strand, within HMPREF1078_RS02955 at 700.760 kb on + strand, within HMPREF1078_RS02955 at 700.764 kb on - strand, within HMPREF1078_RS02955 at 700.780 kb on + strand, within HMPREF1078_RS02955 at 700.816 kb on + strand, within HMPREF1078_RS02955 at 700.817 kb on - strand, within HMPREF1078_RS02955 at 700.846 kb on + strand, within HMPREF1078_RS02955 at 700.846 kb on + strand, within HMPREF1078_RS02955 at 700.847 kb on - strand, within HMPREF1078_RS02955 at 700.847 kb on - strand, within HMPREF1078_RS02955 at 700.847 kb on - strand, within HMPREF1078_RS02955 at 700.862 kb on + strand, within HMPREF1078_RS02955 at 700.899 kb on + strand, within HMPREF1078_RS02955 at 700.915 kb on - strand, within HMPREF1078_RS02955 at 700.936 kb on - strand, within HMPREF1078_RS02955 at 700.970 kb on + strand, within HMPREF1078_RS02955 at 700.971 kb on - strand, within HMPREF1078_RS02955 at 700.995 kb on + strand, within HMPREF1078_RS02955 at 700.996 kb on - strand, within HMPREF1078_RS02955 at 701.003 kb on + strand, within HMPREF1078_RS02955 at 701.003 kb on + strand, within HMPREF1078_RS02955 at 701.055 kb on + strand at 701.055 kb on + strand at 701.055 kb on + strand at 701.065 kb on + strand at 701.065 kb on + strand at 701.066 kb on - strand at 701.096 kb on + strand at 701.097 kb on - strand at 701.099 kb on - strand at 701.120 kb on + strand, within HMPREF1078_RS02960 at 701.136 kb on + strand, within HMPREF1078_RS02960 at 701.137 kb on - strand, within HMPREF1078_RS02960 at 701.166 kb on - strand, within HMPREF1078_RS02960 at 701.186 kb on + strand, within HMPREF1078_RS02960 at 701.186 kb on + strand, within HMPREF1078_RS02960 at 701.187 kb on - strand, within HMPREF1078_RS02960 at 701.316 kb on + strand, within HMPREF1078_RS02960 at 701.317 kb on - strand, within HMPREF1078_RS02960 at 701.317 kb on - strand, within HMPREF1078_RS02960 at 701.352 kb on + strand, within HMPREF1078_RS02960 at 701.414 kb on + strand, within HMPREF1078_RS02960 at 701.450 kb on - strand at 701.456 kb on + strand at 701.457 kb on - strand at 701.488 kb on + strand at 701.489 kb on - strand at 701.492 kb on + strand at 701.493 kb on - strand at 701.493 kb on - strand at 701.502 kb on - strand at 701.525 kb on + strand at 701.526 kb on - strand at 701.574 kb on + strand, within HMPREF1078_RS02965 at 701.575 kb on - strand, within HMPREF1078_RS02965 at 701.645 kb on + strand, within HMPREF1078_RS02965 at 701.646 kb on - strand, within HMPREF1078_RS02965 at 701.646 kb on - strand, within HMPREF1078_RS02965 at 701.680 kb on + strand, within HMPREF1078_RS02965 at 701.692 kb on + strand, within HMPREF1078_RS02965 at 701.693 kb on - strand, within HMPREF1078_RS02965 at 701.693 kb on - strand, within HMPREF1078_RS02965 at 701.757 kb on + strand, within HMPREF1078_RS02965 at 701.799 kb on - strand, within HMPREF1078_RS02965 at 701.906 kb on + strand at 701.906 kb on + strand at 701.934 kb on - strand at 701.934 kb on - strand at 701.934 kb on - strand at 701.934 kb on - strand at 701.942 kb on + strand at 701.942 kb on + strand at 701.943 kb on - strand at 701.970 kb on + strand at 701.970 kb on + strand at 701.974 kb on + strand at 701.974 kb on + strand at 701.974 kb on + strand at 701.975 kb on - strand at 702.013 kb on + strand, within HMPREF1078_RS02970 at 702.014 kb on - strand, within HMPREF1078_RS02970 at 702.014 kb on - strand, within HMPREF1078_RS02970 at 702.033 kb on - strand, within HMPREF1078_RS02970 at 702.035 kb on - strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.084 kb on + strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.085 kb on - strand, within HMPREF1078_RS02970 at 702.119 kb on - strand, within HMPREF1078_RS02970 at 702.156 kb on - strand, within HMPREF1078_RS02970 at 702.156 kb on - strand, within HMPREF1078_RS02970 at 702.226 kb on + strand, within HMPREF1078_RS02970 at 702.351 kb on + strand, within HMPREF1078_RS02970 at 702.351 kb on + strand, within HMPREF1078_RS02970 at 702.352 kb on - strand, within HMPREF1078_RS02970 at 702.352 kb on - strand, within HMPREF1078_RS02970 at 702.355 kb on - strand, within HMPREF1078_RS02970 at 702.355 kb on - strand, within HMPREF1078_RS02970 at 702.355 kb on - strand, within HMPREF1078_RS02970 at 702.377 kb on + strand, within HMPREF1078_RS02970 at 702.378 kb on - strand, within HMPREF1078_RS02970 at 702.378 kb on - strand, within HMPREF1078_RS02970 at 702.411 kb on + strand at 702.516 kb on + strand at 702.555 kb on + strand at 702.555 kb on + strand at 702.578 kb on + strand at 702.580 kb on + strand at 702.649 kb on + strand at 702.649 kb on + strand at 702.649 kb on + strand at 702.649 kb on + strand at 702.649 kb on + strand at 702.705 kb on + strand at 702.705 kb on + strand at 702.751 kb on + strand at 702.751 kb on + strand at 702.775 kb on + strand, within HMPREF1078_RS02975 at 702.786 kb on + strand, within HMPREF1078_RS02975 at 702.795 kb on + strand, within HMPREF1078_RS02975 at 702.795 kb on + strand, within HMPREF1078_RS02975 at 702.795 kb on + strand, within HMPREF1078_RS02975 at 702.818 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.826 kb on + strand, within HMPREF1078_RS02975 at 702.867 kb on + strand, within HMPREF1078_RS02975 at 702.867 kb on + strand, within HMPREF1078_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 700,511 + +0.1 700,511 + +0.1 700,511 + +1.8 700,511 + -0.7 700,511 + -1.6 700,512 - +1.2 700,611 - +0.7 700,613 + -2.3 700,614 - +0.7 700,628 + +0.3 700,629 - -1.2 700,633 + +0.8 700,633 + -0.6 700,633 + -0.7 700,634 - +0.4 700,647 + -0.6 700,647 + +0.3 700,648 - -0.5 700,648 - +0.3 700,651 + -0.9 700,660 - +0.3 700,682 - HMPREF1078_RS02955 0.14 +0.8 700,695 - HMPREF1078_RS02955 0.17 -0.1 700,695 - HMPREF1078_RS02955 0.17 -1.0 700,698 + HMPREF1078_RS02955 0.18 -1.0 700,699 - HMPREF1078_RS02955 0.18 +0.7 700,735 + HMPREF1078_RS02955 0.26 +2.1 700,736 - HMPREF1078_RS02955 0.26 +0.3 700,736 - HMPREF1078_RS02955 0.26 +0.9 700,760 + HMPREF1078_RS02955 0.31 +1.7 700,760 + HMPREF1078_RS02955 0.31 -0.4 700,760 + HMPREF1078_RS02955 0.31 +0.4 700,764 - HMPREF1078_RS02955 0.32 -0.5 700,780 + HMPREF1078_RS02955 0.35 -1.7 700,816 + HMPREF1078_RS02955 0.43 +1.3 700,817 - HMPREF1078_RS02955 0.43 +0.8 700,846 + HMPREF1078_RS02955 0.50 +0.3 700,846 + HMPREF1078_RS02955 0.50 -0.2 700,847 - HMPREF1078_RS02955 0.50 -0.8 700,847 - HMPREF1078_RS02955 0.50 -1.0 700,847 - HMPREF1078_RS02955 0.50 -1.7 700,862 + HMPREF1078_RS02955 0.53 -1.9 700,899 + HMPREF1078_RS02955 0.61 +0.4 700,915 - HMPREF1078_RS02955 0.65 -0.8 700,936 - HMPREF1078_RS02955 0.69 -1.7 700,970 + HMPREF1078_RS02955 0.76 -0.2 700,971 - HMPREF1078_RS02955 0.77 -0.1 700,995 + HMPREF1078_RS02955 0.82 -1.0 700,996 - HMPREF1078_RS02955 0.82 -0.3 701,003 + HMPREF1078_RS02955 0.84 -2.8 701,003 + HMPREF1078_RS02955 0.84 +1.5 701,055 + +0.2 701,055 + -0.5 701,055 + +1.4 701,065 + -1.4 701,065 + -1.9 701,066 - +1.0 701,096 + +1.8 701,097 - +1.4 701,099 - -0.7 701,120 + HMPREF1078_RS02960 0.11 +0.2 701,136 + HMPREF1078_RS02960 0.15 +1.5 701,137 - HMPREF1078_RS02960 0.15 -0.5 701,166 - HMPREF1078_RS02960 0.22 -1.8 701,186 + HMPREF1078_RS02960 0.27 +0.1 701,186 + HMPREF1078_RS02960 0.27 -3.7 701,187 - HMPREF1078_RS02960 0.27 +0.9 701,316 + HMPREF1078_RS02960 0.59 -0.5 701,317 - HMPREF1078_RS02960 0.59 -1.0 701,317 - HMPREF1078_RS02960 0.59 +0.2 701,352 + HMPREF1078_RS02960 0.67 -0.8 701,414 + HMPREF1078_RS02960 0.82 -0.8 701,450 - +0.7 701,456 + +1.0 701,457 - +0.3 701,488 + +0.0 701,489 - -1.1 701,492 + -0.9 701,493 - -1.4 701,493 - +1.2 701,502 - +0.7 701,525 + +0.7 701,526 - +2.1 701,574 + HMPREF1078_RS02965 0.19 -0.7 701,575 - HMPREF1078_RS02965 0.19 -2.0 701,645 + HMPREF1078_RS02965 0.35 +0.8 701,646 - HMPREF1078_RS02965 0.35 -1.0 701,646 - HMPREF1078_RS02965 0.35 -1.7 701,680 + HMPREF1078_RS02965 0.42 -2.3 701,692 + HMPREF1078_RS02965 0.45 -1.2 701,693 - HMPREF1078_RS02965 0.45 -0.5 701,693 - HMPREF1078_RS02965 0.45 -1.9 701,757 + HMPREF1078_RS02965 0.59 -1.3 701,799 - HMPREF1078_RS02965 0.68 -0.8 701,906 + -1.0 701,906 + +0.1 701,934 - -0.8 701,934 - +0.7 701,934 - +1.2 701,934 - -1.9 701,942 + -1.6 701,942 + -1.2 701,943 - -1.8 701,970 + -1.4 701,970 + +0.1 701,974 + -0.2 701,974 + -0.3 701,974 + +0.8 701,975 - -1.7 702,013 + HMPREF1078_RS02970 0.13 +0.8 702,014 - HMPREF1078_RS02970 0.14 -0.1 702,014 - HMPREF1078_RS02970 0.14 -1.7 702,033 - HMPREF1078_RS02970 0.17 -2.6 702,035 - HMPREF1078_RS02970 0.18 -0.3 702,084 + HMPREF1078_RS02970 0.27 +3.4 702,084 + HMPREF1078_RS02970 0.27 -0.8 702,084 + HMPREF1078_RS02970 0.27 +0.3 702,084 + HMPREF1078_RS02970 0.27 -0.7 702,084 + HMPREF1078_RS02970 0.27 -0.7 702,084 + HMPREF1078_RS02970 0.27 -0.5 702,084 + HMPREF1078_RS02970 0.27 +0.3 702,085 - HMPREF1078_RS02970 0.28 -1.6 702,085 - HMPREF1078_RS02970 0.28 -1.8 702,085 - HMPREF1078_RS02970 0.28 -0.8 702,085 - HMPREF1078_RS02970 0.28 -2.6 702,085 - HMPREF1078_RS02970 0.28 -2.6 702,085 - HMPREF1078_RS02970 0.28 +0.7 702,085 - HMPREF1078_RS02970 0.28 -0.8 702,119 - HMPREF1078_RS02970 0.34 -1.2 702,156 - HMPREF1078_RS02970 0.42 -1.9 702,156 - HMPREF1078_RS02970 0.42 -0.1 702,226 + HMPREF1078_RS02970 0.55 -1.0 702,351 + HMPREF1078_RS02970 0.80 +0.2 702,351 + HMPREF1078_RS02970 0.80 -2.6 702,352 - HMPREF1078_RS02970 0.80 -0.4 702,352 - HMPREF1078_RS02970 0.80 -0.7 702,355 - HMPREF1078_RS02970 0.81 -0.9 702,355 - HMPREF1078_RS02970 0.81 -1.7 702,355 - HMPREF1078_RS02970 0.81 -2.7 702,377 + HMPREF1078_RS02970 0.85 -0.9 702,378 - HMPREF1078_RS02970 0.85 -3.1 702,378 - HMPREF1078_RS02970 0.85 -1.4 702,411 + -0.9 702,516 + +1.0 702,555 + +0.4 702,555 + -2.6 702,578 + +3.7 702,580 + +0.7 702,649 + +1.8 702,649 + -1.3 702,649 + +0.5 702,649 + -0.9 702,649 + +1.1 702,705 + +0.1 702,705 + +0.0 702,751 + +0.2 702,751 + +0.7 702,775 + HMPREF1078_RS02975 0.12 +0.4 702,786 + HMPREF1078_RS02975 0.13 -0.1 702,795 + HMPREF1078_RS02975 0.15 -0.2 702,795 + HMPREF1078_RS02975 0.15 +1.1 702,795 + HMPREF1078_RS02975 0.15 -1.6 702,818 + HMPREF1078_RS02975 0.18 -0.9 702,826 + HMPREF1078_RS02975 0.20 -3.6 702,826 + HMPREF1078_RS02975 0.20 +2.0 702,826 + HMPREF1078_RS02975 0.20 -0.7 702,826 + HMPREF1078_RS02975 0.20 -0.7 702,826 + HMPREF1078_RS02975 0.20 -0.9 702,826 + HMPREF1078_RS02975 0.20 -0.4 702,867 + HMPREF1078_RS02975 0.26 -0.6 702,867 + HMPREF1078_RS02975 0.26 -0.7
Or see this region's nucleotide sequence