Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02450 and HMPREF1078_RS02455 are separated by 57 nucleotides HMPREF1078_RS02455 and HMPREF1078_RS02460 are separated by 285 nucleotides
HMPREF1078_RS02450: HMPREF1078_RS02450 - histidinol dehydrogenase, at 601,206 to 602,495
_RS02450
HMPREF1078_RS02455: HMPREF1078_RS02455 - ATP phosphoribosyltransferase, at 602,553 to 603,404
_RS02455
HMPREF1078_RS02460: HMPREF1078_RS02460 - M1 family aminopeptidase, at 603,690 to 606,236
_RS02460
Position (kb) 602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 601.563 kb on - strand, within HMPREF1078_RS02450 at 601.855 kb on + strand, within HMPREF1078_RS02450 at 601.856 kb on - strand, within HMPREF1078_RS02450 at 601.856 kb on - strand, within HMPREF1078_RS02450 at 601.876 kb on - strand, within HMPREF1078_RS02450 at 601.881 kb on - strand, within HMPREF1078_RS02450 at 601.882 kb on + strand, within HMPREF1078_RS02450 at 601.883 kb on - strand, within HMPREF1078_RS02450 at 601.883 kb on - strand, within HMPREF1078_RS02450 at 601.883 kb on - strand, within HMPREF1078_RS02450 at 601.883 kb on - strand, within HMPREF1078_RS02450 at 601.883 kb on - strand, within HMPREF1078_RS02450 at 601.935 kb on - strand, within HMPREF1078_RS02450 at 601.950 kb on + strand, within HMPREF1078_RS02450 at 602.024 kb on + strand, within HMPREF1078_RS02450 at 602.116 kb on + strand, within HMPREF1078_RS02450 at 602.119 kb on - strand, within HMPREF1078_RS02450 at 602.215 kb on - strand, within HMPREF1078_RS02450 at 602.223 kb on - strand, within HMPREF1078_RS02450 at 602.243 kb on + strand, within HMPREF1078_RS02450 at 602.244 kb on - strand, within HMPREF1078_RS02450 at 602.266 kb on - strand, within HMPREF1078_RS02450 at 602.321 kb on + strand, within HMPREF1078_RS02450 at 602.331 kb on + strand, within HMPREF1078_RS02450 at 602.331 kb on + strand, within HMPREF1078_RS02450 at 602.331 kb on + strand, within HMPREF1078_RS02450 at 602.332 kb on - strand, within HMPREF1078_RS02450 at 602.498 kb on + strand at 602.549 kb on + strand at 602.586 kb on + strand at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.724 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.763 kb on + strand, within HMPREF1078_RS02455 at 602.764 kb on - strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on + strand, within HMPREF1078_RS02455 at 602.767 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.768 kb on - strand, within HMPREF1078_RS02455 at 602.855 kb on + strand, within HMPREF1078_RS02455 at 603.034 kb on + strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.035 kb on - strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.190 kb on + strand, within HMPREF1078_RS02455 at 603.210 kb on - strand, within HMPREF1078_RS02455 at 603.213 kb on + strand, within HMPREF1078_RS02455 at 603.214 kb on - strand, within HMPREF1078_RS02455 at 603.248 kb on + strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.268 kb on - strand, within HMPREF1078_RS02455 at 603.308 kb on + strand, within HMPREF1078_RS02455 at 603.325 kb on - strand at 603.399 kb on + strand at 603.399 kb on + strand at 603.408 kb on + strand at 603.420 kb on - strand at 603.420 kb on - strand at 603.443 kb on - strand at 603.469 kb on - strand at 603.476 kb on + strand at 603.477 kb on - strand at 603.479 kb on - strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.483 kb on + strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.484 kb on - strand at 603.491 kb on + strand at 603.491 kb on + strand at 603.492 kb on - strand at 603.492 kb on - strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.495 kb on + strand at 603.496 kb on - strand at 603.528 kb on - strand at 603.528 kb on - strand at 603.558 kb on + strand at 603.659 kb on + strand at 603.698 kb on - strand at 603.698 kb on - strand at 603.726 kb on - strand at 603.801 kb on - strand at 603.801 kb on - strand at 603.893 kb on + strand at 604.154 kb on + strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.155 kb on - strand, within HMPREF1078_RS02460 at 604.213 kb on + strand, within HMPREF1078_RS02460 at 604.216 kb on - strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.370 kb on + strand, within HMPREF1078_RS02460 at 604.371 kb on - strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.372 kb on + strand, within HMPREF1078_RS02460 at 604.373 kb on - strand, within HMPREF1078_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 601,563 - HMPREF1078_RS02450 0.28 -2.9 601,855 + HMPREF1078_RS02450 0.50 -1.4 601,856 - HMPREF1078_RS02450 0.50 -2.2 601,856 - HMPREF1078_RS02450 0.50 -0.9 601,876 - HMPREF1078_RS02450 0.52 -1.7 601,881 - HMPREF1078_RS02450 0.52 -2.1 601,882 + HMPREF1078_RS02450 0.52 -2.2 601,883 - HMPREF1078_RS02450 0.52 -2.0 601,883 - HMPREF1078_RS02450 0.52 -0.5 601,883 - HMPREF1078_RS02450 0.52 -2.5 601,883 - HMPREF1078_RS02450 0.52 -2.6 601,883 - HMPREF1078_RS02450 0.52 -1.6 601,935 - HMPREF1078_RS02450 0.57 -1.9 601,950 + HMPREF1078_RS02450 0.58 +0.4 602,024 + HMPREF1078_RS02450 0.63 -3.1 602,116 + HMPREF1078_RS02450 0.71 +2.7 602,119 - HMPREF1078_RS02450 0.71 -0.6 602,215 - HMPREF1078_RS02450 0.78 -2.8 602,223 - HMPREF1078_RS02450 0.79 -0.1 602,243 + HMPREF1078_RS02450 0.80 -2.4 602,244 - HMPREF1078_RS02450 0.80 -2.5 602,266 - HMPREF1078_RS02450 0.82 -1.2 602,321 + HMPREF1078_RS02450 0.86 -1.5 602,331 + HMPREF1078_RS02450 0.87 -2.5 602,331 + HMPREF1078_RS02450 0.87 -2.1 602,331 + HMPREF1078_RS02450 0.87 -2.7 602,332 - HMPREF1078_RS02450 0.87 -2.1 602,498 + -2.1 602,549 + -1.8 602,586 + -3.0 602,724 + HMPREF1078_RS02455 0.20 -1.9 602,724 + HMPREF1078_RS02455 0.20 -2.1 602,724 + HMPREF1078_RS02455 0.20 -1.1 602,763 + HMPREF1078_RS02455 0.25 -0.3 602,763 + HMPREF1078_RS02455 0.25 -2.6 602,763 + HMPREF1078_RS02455 0.25 -2.3 602,764 - HMPREF1078_RS02455 0.25 -1.8 602,767 + HMPREF1078_RS02455 0.25 -2.6 602,767 + HMPREF1078_RS02455 0.25 -1.4 602,767 + HMPREF1078_RS02455 0.25 -1.2 602,767 + HMPREF1078_RS02455 0.25 -2.2 602,767 - HMPREF1078_RS02455 0.25 +0.8 602,768 - HMPREF1078_RS02455 0.25 -0.1 602,768 - HMPREF1078_RS02455 0.25 +1.6 602,768 - HMPREF1078_RS02455 0.25 -3.5 602,855 + HMPREF1078_RS02455 0.35 -1.4 603,034 + HMPREF1078_RS02455 0.56 -1.3 603,035 - HMPREF1078_RS02455 0.57 -3.1 603,035 - HMPREF1078_RS02455 0.57 -1.8 603,190 + HMPREF1078_RS02455 0.75 -0.0 603,190 + HMPREF1078_RS02455 0.75 +1.1 603,210 - HMPREF1078_RS02455 0.77 -3.0 603,213 + HMPREF1078_RS02455 0.77 -0.3 603,214 - HMPREF1078_RS02455 0.78 -1.2 603,248 + HMPREF1078_RS02455 0.82 -0.2 603,268 - HMPREF1078_RS02455 0.84 -2.3 603,268 - HMPREF1078_RS02455 0.84 -1.3 603,308 + HMPREF1078_RS02455 0.89 -3.2 603,325 - -3.8 603,399 + -1.6 603,399 + -3.4 603,408 + -0.1 603,420 - -1.4 603,420 - +0.1 603,443 - +0.6 603,469 - +0.6 603,476 + -3.3 603,477 - -0.3 603,479 - -0.5 603,483 + -3.1 603,483 + -0.1 603,483 + -2.7 603,483 + -2.6 603,483 + -2.7 603,483 + -0.1 603,483 + -3.5 603,484 - -3.3 603,484 - +0.1 603,484 - -0.5 603,484 - +0.4 603,484 - +0.1 603,484 - +0.3 603,491 + -3.0 603,491 + -2.0 603,492 - -0.7 603,492 - -0.1 603,495 + -0.9 603,495 + -2.2 603,495 + -1.6 603,495 + -2.9 603,495 + -1.7 603,496 - +0.5 603,528 - -0.3 603,528 - -0.4 603,558 + -2.4 603,659 + +0.8 603,698 - +0.9 603,698 - -1.6 603,726 - -0.7 603,801 - -1.0 603,801 - +0.4 603,893 + -1.6 604,154 + HMPREF1078_RS02460 0.18 -0.2 604,155 - HMPREF1078_RS02460 0.18 +0.2 604,155 - HMPREF1078_RS02460 0.18 -0.2 604,155 - HMPREF1078_RS02460 0.18 -0.7 604,213 + HMPREF1078_RS02460 0.21 -0.1 604,216 - HMPREF1078_RS02460 0.21 -1.3 604,370 + HMPREF1078_RS02460 0.27 +1.2 604,370 + HMPREF1078_RS02460 0.27 -2.5 604,371 - HMPREF1078_RS02460 0.27 -0.3 604,372 + HMPREF1078_RS02460 0.27 -0.2 604,372 + HMPREF1078_RS02460 0.27 -2.1 604,373 - HMPREF1078_RS02460 0.27 -0.7
Or see this region's nucleotide sequence