Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02435 and HMPREF1078_RS02440 are separated by 75 nucleotides HMPREF1078_RS02440 and HMPREF1078_RS02445 are separated by 11 nucleotides
HMPREF1078_RS02435: HMPREF1078_RS02435 - glycoside hydrolase family 43 protein, at 597,851 to 598,963
_RS02435
HMPREF1078_RS02440: HMPREF1078_RS02440 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 599,039 to 600,166
_RS02440
HMPREF1078_RS02445: HMPREF1078_RS02445 - histidinol-phosphate transaminase, at 600,178 to 601,209
_RS02445
Position (kb) 599
600
601 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 598.064 kb on + strand, within HMPREF1078_RS02435 at 598.107 kb on + strand, within HMPREF1078_RS02435 at 598.166 kb on + strand, within HMPREF1078_RS02435 at 598.166 kb on + strand, within HMPREF1078_RS02435 at 598.167 kb on - strand, within HMPREF1078_RS02435 at 598.167 kb on - strand, within HMPREF1078_RS02435 at 598.188 kb on - strand, within HMPREF1078_RS02435 at 598.190 kb on - strand, within HMPREF1078_RS02435 at 598.190 kb on - strand, within HMPREF1078_RS02435 at 598.196 kb on + strand, within HMPREF1078_RS02435 at 598.197 kb on - strand, within HMPREF1078_RS02435 at 598.197 kb on - strand, within HMPREF1078_RS02435 at 598.370 kb on + strand, within HMPREF1078_RS02435 at 598.370 kb on + strand, within HMPREF1078_RS02435 at 598.371 kb on - strand, within HMPREF1078_RS02435 at 598.371 kb on - strand, within HMPREF1078_RS02435 at 598.394 kb on + strand, within HMPREF1078_RS02435 at 598.394 kb on + strand, within HMPREF1078_RS02435 at 598.395 kb on - strand, within HMPREF1078_RS02435 at 598.458 kb on + strand, within HMPREF1078_RS02435 at 598.459 kb on - strand, within HMPREF1078_RS02435 at 598.473 kb on + strand, within HMPREF1078_RS02435 at 598.474 kb on - strand, within HMPREF1078_RS02435 at 598.475 kb on + strand, within HMPREF1078_RS02435 at 598.475 kb on + strand, within HMPREF1078_RS02435 at 598.475 kb on + strand, within HMPREF1078_RS02435 at 598.476 kb on - strand, within HMPREF1078_RS02435 at 598.546 kb on - strand, within HMPREF1078_RS02435 at 598.628 kb on + strand, within HMPREF1078_RS02435 at 598.629 kb on - strand, within HMPREF1078_RS02435 at 598.630 kb on + strand, within HMPREF1078_RS02435 at 598.630 kb on + strand, within HMPREF1078_RS02435 at 598.630 kb on + strand, within HMPREF1078_RS02435 at 598.630 kb on + strand, within HMPREF1078_RS02435 at 598.631 kb on - strand, within HMPREF1078_RS02435 at 598.631 kb on - strand, within HMPREF1078_RS02435 at 598.631 kb on - strand, within HMPREF1078_RS02435 at 598.631 kb on - strand, within HMPREF1078_RS02435 at 598.632 kb on - strand, within HMPREF1078_RS02435 at 598.648 kb on + strand, within HMPREF1078_RS02435 at 598.649 kb on - strand, within HMPREF1078_RS02435 at 598.652 kb on + strand, within HMPREF1078_RS02435 at 598.653 kb on - strand, within HMPREF1078_RS02435 at 598.655 kb on + strand, within HMPREF1078_RS02435 at 598.656 kb on - strand, within HMPREF1078_RS02435 at 598.657 kb on + strand, within HMPREF1078_RS02435 at 598.657 kb on + strand, within HMPREF1078_RS02435 at 598.657 kb on + strand, within HMPREF1078_RS02435 at 598.658 kb on - strand, within HMPREF1078_RS02435 at 598.658 kb on - strand, within HMPREF1078_RS02435 at 598.665 kb on - strand, within HMPREF1078_RS02435 at 598.677 kb on - strand, within HMPREF1078_RS02435 at 598.764 kb on + strand, within HMPREF1078_RS02435 at 598.764 kb on + strand, within HMPREF1078_RS02435 at 598.811 kb on - strand, within HMPREF1078_RS02435 at 598.847 kb on + strand, within HMPREF1078_RS02435 at 598.848 kb on - strand, within HMPREF1078_RS02435 at 598.848 kb on - strand, within HMPREF1078_RS02435 at 598.865 kb on + strand at 598.901 kb on - strand at 598.937 kb on + strand at 598.937 kb on + strand at 598.937 kb on + strand at 599.070 kb on + strand at 599.070 kb on + strand at 599.077 kb on - strand at 599.140 kb on + strand at 599.141 kb on - strand at 599.141 kb on - strand at 599.236 kb on + strand, within HMPREF1078_RS02440 at 599.237 kb on - strand, within HMPREF1078_RS02440 at 599.373 kb on - strand, within HMPREF1078_RS02440 at 599.417 kb on + strand, within HMPREF1078_RS02440 at 599.417 kb on + strand, within HMPREF1078_RS02440 at 599.423 kb on - strand, within HMPREF1078_RS02440 at 599.435 kb on + strand, within HMPREF1078_RS02440 at 599.436 kb on - strand, within HMPREF1078_RS02440 at 599.503 kb on + strand, within HMPREF1078_RS02440 at 599.504 kb on - strand, within HMPREF1078_RS02440 at 599.504 kb on - strand, within HMPREF1078_RS02440 at 599.504 kb on - strand, within HMPREF1078_RS02440 at 599.594 kb on - strand, within HMPREF1078_RS02440 at 599.632 kb on - strand, within HMPREF1078_RS02440 at 599.632 kb on - strand, within HMPREF1078_RS02440 at 599.683 kb on + strand, within HMPREF1078_RS02440 at 599.683 kb on + strand, within HMPREF1078_RS02440 at 599.768 kb on - strand, within HMPREF1078_RS02440 at 599.787 kb on - strand, within HMPREF1078_RS02440 at 599.793 kb on + strand, within HMPREF1078_RS02440 at 599.794 kb on - strand, within HMPREF1078_RS02440 at 599.794 kb on - strand, within HMPREF1078_RS02440 at 599.826 kb on + strand, within HMPREF1078_RS02440 at 599.839 kb on + strand, within HMPREF1078_RS02440 at 599.839 kb on + strand, within HMPREF1078_RS02440 at 599.839 kb on + strand, within HMPREF1078_RS02440 at 599.840 kb on - strand, within HMPREF1078_RS02440 at 599.840 kb on - strand, within HMPREF1078_RS02440 at 600.028 kb on - strand, within HMPREF1078_RS02440 at 600.048 kb on + strand, within HMPREF1078_RS02440 at 600.049 kb on - strand, within HMPREF1078_RS02440 at 600.068 kb on - strand at 600.080 kb on + strand at 600.105 kb on + strand at 600.106 kb on - strand at 600.149 kb on - strand at 600.153 kb on - strand at 600.153 kb on - strand at 600.172 kb on - strand at 600.286 kb on - strand, within HMPREF1078_RS02445 at 600.288 kb on + strand, within HMPREF1078_RS02445 at 600.289 kb on - strand, within HMPREF1078_RS02445 at 600.289 kb on - strand, within HMPREF1078_RS02445 at 600.311 kb on + strand, within HMPREF1078_RS02445 at 600.311 kb on + strand, within HMPREF1078_RS02445 at 600.365 kb on + strand, within HMPREF1078_RS02445 at 600.473 kb on + strand, within HMPREF1078_RS02445 at 600.474 kb on - strand, within HMPREF1078_RS02445 at 600.474 kb on - strand, within HMPREF1078_RS02445 at 600.509 kb on + strand, within HMPREF1078_RS02445 at 600.509 kb on + strand, within HMPREF1078_RS02445 at 600.677 kb on + strand, within HMPREF1078_RS02445 at 600.678 kb on - strand, within HMPREF1078_RS02445 at 600.711 kb on + strand, within HMPREF1078_RS02445 at 600.712 kb on - strand, within HMPREF1078_RS02445 at 600.712 kb on - strand, within HMPREF1078_RS02445 at 600.725 kb on + strand, within HMPREF1078_RS02445 at 600.725 kb on + strand, within HMPREF1078_RS02445 at 600.725 kb on + strand, within HMPREF1078_RS02445 at 600.747 kb on + strand, within HMPREF1078_RS02445 at 600.782 kb on - strand, within HMPREF1078_RS02445 at 600.869 kb on - strand, within HMPREF1078_RS02445 at 600.896 kb on + strand, within HMPREF1078_RS02445 at 600.897 kb on - strand, within HMPREF1078_RS02445 at 600.897 kb on - strand, within HMPREF1078_RS02445 at 600.905 kb on + strand, within HMPREF1078_RS02445 at 600.922 kb on + strand, within HMPREF1078_RS02445 at 600.923 kb on - strand, within HMPREF1078_RS02445 at 601.002 kb on + strand, within HMPREF1078_RS02445 at 601.079 kb on + strand, within HMPREF1078_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 598,064 + HMPREF1078_RS02435 0.19 -1.7 598,107 + HMPREF1078_RS02435 0.23 +0.7 598,166 + HMPREF1078_RS02435 0.28 +1.7 598,166 + HMPREF1078_RS02435 0.28 -1.0 598,167 - HMPREF1078_RS02435 0.28 +2.2 598,167 - HMPREF1078_RS02435 0.28 +1.1 598,188 - HMPREF1078_RS02435 0.30 -2.2 598,190 - HMPREF1078_RS02435 0.30 -1.3 598,190 - HMPREF1078_RS02435 0.30 +0.2 598,196 + HMPREF1078_RS02435 0.31 -1.2 598,197 - HMPREF1078_RS02435 0.31 -0.5 598,197 - HMPREF1078_RS02435 0.31 -0.8 598,370 + HMPREF1078_RS02435 0.47 +0.1 598,370 + HMPREF1078_RS02435 0.47 -0.4 598,371 - HMPREF1078_RS02435 0.47 +0.2 598,371 - HMPREF1078_RS02435 0.47 -0.4 598,394 + HMPREF1078_RS02435 0.49 +1.3 598,394 + HMPREF1078_RS02435 0.49 -1.1 598,395 - HMPREF1078_RS02435 0.49 -0.6 598,458 + HMPREF1078_RS02435 0.55 -0.8 598,459 - HMPREF1078_RS02435 0.55 +0.1 598,473 + HMPREF1078_RS02435 0.56 +0.4 598,474 - HMPREF1078_RS02435 0.56 +0.4 598,475 + HMPREF1078_RS02435 0.56 +0.5 598,475 + HMPREF1078_RS02435 0.56 +0.5 598,475 + HMPREF1078_RS02435 0.56 -1.4 598,476 - HMPREF1078_RS02435 0.56 -0.6 598,546 - HMPREF1078_RS02435 0.62 -0.9 598,628 + HMPREF1078_RS02435 0.70 -0.1 598,629 - HMPREF1078_RS02435 0.70 +1.1 598,630 + HMPREF1078_RS02435 0.70 +0.9 598,630 + HMPREF1078_RS02435 0.70 -0.3 598,630 + HMPREF1078_RS02435 0.70 +0.9 598,630 + HMPREF1078_RS02435 0.70 +0.5 598,631 - HMPREF1078_RS02435 0.70 -0.9 598,631 - HMPREF1078_RS02435 0.70 -0.6 598,631 - HMPREF1078_RS02435 0.70 -0.6 598,631 - HMPREF1078_RS02435 0.70 -0.7 598,632 - HMPREF1078_RS02435 0.70 +0.5 598,648 + HMPREF1078_RS02435 0.72 -2.0 598,649 - HMPREF1078_RS02435 0.72 -0.4 598,652 + HMPREF1078_RS02435 0.72 -0.3 598,653 - HMPREF1078_RS02435 0.72 +0.8 598,655 + HMPREF1078_RS02435 0.72 -0.1 598,656 - HMPREF1078_RS02435 0.72 +0.2 598,657 + HMPREF1078_RS02435 0.72 +0.7 598,657 + HMPREF1078_RS02435 0.72 +0.5 598,657 + HMPREF1078_RS02435 0.72 -1.1 598,658 - HMPREF1078_RS02435 0.73 +0.0 598,658 - HMPREF1078_RS02435 0.73 +0.7 598,665 - HMPREF1078_RS02435 0.73 +0.6 598,677 - HMPREF1078_RS02435 0.74 +0.5 598,764 + HMPREF1078_RS02435 0.82 +0.4 598,764 + HMPREF1078_RS02435 0.82 +0.3 598,811 - HMPREF1078_RS02435 0.86 +1.3 598,847 + HMPREF1078_RS02435 0.89 -0.1 598,848 - HMPREF1078_RS02435 0.90 -0.4 598,848 - HMPREF1078_RS02435 0.90 -0.9 598,865 + -2.1 598,901 - -2.4 598,937 + -1.2 598,937 + -1.4 598,937 + +0.1 599,070 + -0.3 599,070 + -3.1 599,077 - -0.9 599,140 + -0.5 599,141 - -2.6 599,141 - -2.5 599,236 + HMPREF1078_RS02440 0.17 -0.9 599,237 - HMPREF1078_RS02440 0.18 -3.4 599,373 - HMPREF1078_RS02440 0.30 -1.1 599,417 + HMPREF1078_RS02440 0.34 -2.1 599,417 + HMPREF1078_RS02440 0.34 -2.1 599,423 - HMPREF1078_RS02440 0.34 -2.8 599,435 + HMPREF1078_RS02440 0.35 -3.2 599,436 - HMPREF1078_RS02440 0.35 -1.3 599,503 + HMPREF1078_RS02440 0.41 +0.4 599,504 - HMPREF1078_RS02440 0.41 -3.8 599,504 - HMPREF1078_RS02440 0.41 -2.3 599,504 - HMPREF1078_RS02440 0.41 -1.2 599,594 - HMPREF1078_RS02440 0.49 -2.3 599,632 - HMPREF1078_RS02440 0.53 -2.6 599,632 - HMPREF1078_RS02440 0.53 +0.4 599,683 + HMPREF1078_RS02440 0.57 -4.1 599,683 + HMPREF1078_RS02440 0.57 -2.7 599,768 - HMPREF1078_RS02440 0.65 -2.4 599,787 - HMPREF1078_RS02440 0.66 -0.5 599,793 + HMPREF1078_RS02440 0.67 -2.3 599,794 - HMPREF1078_RS02440 0.67 -1.6 599,794 - HMPREF1078_RS02440 0.67 -2.0 599,826 + HMPREF1078_RS02440 0.70 -2.9 599,839 + HMPREF1078_RS02440 0.71 -2.6 599,839 + HMPREF1078_RS02440 0.71 +0.1 599,839 + HMPREF1078_RS02440 0.71 -0.9 599,840 - HMPREF1078_RS02440 0.71 -0.3 599,840 - HMPREF1078_RS02440 0.71 -0.2 600,028 - HMPREF1078_RS02440 0.88 -2.4 600,048 + HMPREF1078_RS02440 0.89 -2.0 600,049 - HMPREF1078_RS02440 0.90 -1.7 600,068 - -1.3 600,080 + -1.4 600,105 + -2.4 600,106 - -3.1 600,149 - -1.3 600,153 - -2.0 600,153 - -2.0 600,172 - -0.5 600,286 - HMPREF1078_RS02445 0.10 -2.3 600,288 + HMPREF1078_RS02445 0.11 -1.1 600,289 - HMPREF1078_RS02445 0.11 +1.1 600,289 - HMPREF1078_RS02445 0.11 +0.1 600,311 + HMPREF1078_RS02445 0.13 -0.9 600,311 + HMPREF1078_RS02445 0.13 -1.1 600,365 + HMPREF1078_RS02445 0.18 -0.9 600,473 + HMPREF1078_RS02445 0.29 -1.7 600,474 - HMPREF1078_RS02445 0.29 -2.9 600,474 - HMPREF1078_RS02445 0.29 -0.4 600,509 + HMPREF1078_RS02445 0.32 -0.7 600,509 + HMPREF1078_RS02445 0.32 -1.8 600,677 + HMPREF1078_RS02445 0.48 -2.4 600,678 - HMPREF1078_RS02445 0.48 -0.4 600,711 + HMPREF1078_RS02445 0.52 -1.5 600,712 - HMPREF1078_RS02445 0.52 -1.2 600,712 - HMPREF1078_RS02445 0.52 -1.4 600,725 + HMPREF1078_RS02445 0.53 -0.3 600,725 + HMPREF1078_RS02445 0.53 -2.3 600,725 + HMPREF1078_RS02445 0.53 -2.6 600,747 + HMPREF1078_RS02445 0.55 -2.8 600,782 - HMPREF1078_RS02445 0.59 -0.6 600,869 - HMPREF1078_RS02445 0.67 -1.4 600,896 + HMPREF1078_RS02445 0.70 -3.3 600,897 - HMPREF1078_RS02445 0.70 -3.2 600,897 - HMPREF1078_RS02445 0.70 -1.7 600,905 + HMPREF1078_RS02445 0.70 -3.1 600,922 + HMPREF1078_RS02445 0.72 +1.4 600,923 - HMPREF1078_RS02445 0.72 -2.0 601,002 + HMPREF1078_RS02445 0.80 -2.7 601,079 + HMPREF1078_RS02445 0.87 -4.0
Or see this region's nucleotide sequence