Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02130

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS19700 and HMPREF1078_RS02130 are separated by 6 nucleotidesHMPREF1078_RS02130 and HMPREF1078_RS02135 are separated by 200 nucleotides HMPREF1078_RS19700: HMPREF1078_RS19700 - DDE transposase, at 527,133 to 527,996 _RS19700 HMPREF1078_RS02130: HMPREF1078_RS02130 - hybrid sensor histidine kinase/response regulator, at 528,003 to 529,121 _RS02130 HMPREF1078_RS02135: HMPREF1078_RS02135 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 529,322 to 531,772 _RS02135 Position (kb) 528 529 530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 527.008 kb on - strandat 527.008 kb on - strandat 527.010 kb on - strandat 527.010 kb on - strandat 527.010 kb on - strandat 527.031 kb on + strandat 527.031 kb on + strandat 527.060 kb on - strandat 527.170 kb on - strandat 527.179 kb on - strandat 527.197 kb on - strandat 527.261 kb on - strand, within HMPREF1078_RS19700at 527.261 kb on - strand, within HMPREF1078_RS19700at 527.261 kb on - strand, within HMPREF1078_RS19700at 527.396 kb on + strand, within HMPREF1078_RS19700at 527.396 kb on + strand, within HMPREF1078_RS19700at 527.406 kb on - strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.432 kb on + strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.433 kb on - strand, within HMPREF1078_RS19700at 527.434 kb on + strand, within HMPREF1078_RS19700at 527.434 kb on + strand, within HMPREF1078_RS19700at 527.435 kb on - strand, within HMPREF1078_RS19700at 527.435 kb on - strand, within HMPREF1078_RS19700at 527.465 kb on - strand, within HMPREF1078_RS19700at 527.465 kb on - strand, within HMPREF1078_RS19700at 527.510 kb on - strand, within HMPREF1078_RS19700at 527.571 kb on + strand, within HMPREF1078_RS19700at 527.571 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.632 kb on + strand, within HMPREF1078_RS19700at 527.636 kb on + strand, within HMPREF1078_RS19700at 527.636 kb on + strand, within HMPREF1078_RS19700at 527.639 kb on + strand, within HMPREF1078_RS19700at 528.001 kb on + strandat 528.105 kb on - strandat 528.105 kb on - strandat 528.264 kb on + strand, within HMPREF1078_RS02130at 528.265 kb on - strand, within HMPREF1078_RS02130at 528.326 kb on + strand, within HMPREF1078_RS02130at 528.338 kb on + strand, within HMPREF1078_RS02130at 528.369 kb on - strand, within HMPREF1078_RS02130at 528.393 kb on + strand, within HMPREF1078_RS02130at 528.394 kb on - strand, within HMPREF1078_RS02130at 528.424 kb on - strand, within HMPREF1078_RS02130at 528.445 kb on - strand, within HMPREF1078_RS02130at 528.473 kb on - strand, within HMPREF1078_RS02130at 528.574 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.576 kb on + strand, within HMPREF1078_RS02130at 528.577 kb on - strand, within HMPREF1078_RS02130at 528.658 kb on - strand, within HMPREF1078_RS02130at 528.658 kb on - strand, within HMPREF1078_RS02130at 528.725 kb on + strand, within HMPREF1078_RS02130at 528.726 kb on - strand, within HMPREF1078_RS02130at 528.798 kb on - strand, within HMPREF1078_RS02130at 528.802 kb on + strand, within HMPREF1078_RS02130at 528.803 kb on - strand, within HMPREF1078_RS02130at 528.803 kb on - strand, within HMPREF1078_RS02130at 528.836 kb on + strand, within HMPREF1078_RS02130at 528.867 kb on - strand, within HMPREF1078_RS02130at 528.945 kb on - strand, within HMPREF1078_RS02130at 528.945 kb on - strand, within HMPREF1078_RS02130at 528.991 kb on - strand, within HMPREF1078_RS02130at 528.999 kb on - strand, within HMPREF1078_RS02130at 528.999 kb on - strand, within HMPREF1078_RS02130at 529.020 kb on + strandat 529.021 kb on - strandat 529.026 kb on - strandat 529.027 kb on + strandat 529.068 kb on - strandat 529.092 kb on + strandat 529.093 kb on - strandat 529.095 kb on + strandat 529.097 kb on + strandat 529.098 kb on - strandat 529.098 kb on - strandat 529.098 kb on - strandat 529.099 kb on + strandat 529.100 kb on - strandat 529.155 kb on - strandat 529.190 kb on - strandat 529.241 kb on + strandat 529.247 kb on - strandat 529.260 kb on + strandat 529.304 kb on - strandat 529.310 kb on + strandat 529.353 kb on + strandat 529.354 kb on - strandat 529.354 kb on - strandat 529.393 kb on + strandat 529.440 kb on + strandat 529.440 kb on + strandat 529.441 kb on - strandat 529.441 kb on - strandat 529.442 kb on + strandat 529.443 kb on - strandat 529.486 kb on + strandat 529.487 kb on - strandat 529.652 kb on + strand, within HMPREF1078_RS02135at 529.653 kb on - strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.654 kb on + strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.655 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.659 kb on - strand, within HMPREF1078_RS02135at 529.681 kb on + strand, within HMPREF1078_RS02135at 529.764 kb on - strand, within HMPREF1078_RS02135at 529.764 kb on - strand, within HMPREF1078_RS02135at 529.774 kb on - strand, within HMPREF1078_RS02135at 529.796 kb on + strand, within HMPREF1078_RS02135at 529.796 kb on + strand, within HMPREF1078_RS02135at 529.797 kb on - strand, within HMPREF1078_RS02135at 529.814 kb on - strand, within HMPREF1078_RS02135at 529.846 kb on - strand, within HMPREF1078_RS02135at 530.065 kb on - strand, within HMPREF1078_RS02135

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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527,008 - +0.9
527,008 - -1.1
527,010 - +1.4
527,010 - -1.1
527,010 - -0.8
527,031 + +1.5
527,031 + -0.8
527,060 - -0.6
527,170 - +0.0
527,179 - -2.9
527,197 - -0.2
527,261 - HMPREF1078_RS19700 0.15 -1.2
527,261 - HMPREF1078_RS19700 0.15 -0.6
527,261 - HMPREF1078_RS19700 0.15 +3.2
527,396 + HMPREF1078_RS19700 0.30 -0.4
527,396 + HMPREF1078_RS19700 0.30 +0.4
527,406 - HMPREF1078_RS19700 0.32 -1.1
527,432 + HMPREF1078_RS19700 0.35 +0.7
527,432 + HMPREF1078_RS19700 0.35 -1.8
527,432 + HMPREF1078_RS19700 0.35 -1.3
527,433 - HMPREF1078_RS19700 0.35 +0.1
527,433 - HMPREF1078_RS19700 0.35 -3.5
527,433 - HMPREF1078_RS19700 0.35 +0.6
527,434 + HMPREF1078_RS19700 0.35 -0.1
527,434 + HMPREF1078_RS19700 0.35 +1.3
527,435 - HMPREF1078_RS19700 0.35 +1.5
527,435 - HMPREF1078_RS19700 0.35 -1.4
527,465 - HMPREF1078_RS19700 0.38 -0.1
527,465 - HMPREF1078_RS19700 0.38 -0.6
527,510 - HMPREF1078_RS19700 0.44 +0.8
527,571 + HMPREF1078_RS19700 0.51 -3.1
527,571 + HMPREF1078_RS19700 0.51 -0.6
527,632 + HMPREF1078_RS19700 0.58 -1.8
527,632 + HMPREF1078_RS19700 0.58 -0.7
527,632 + HMPREF1078_RS19700 0.58 -0.2
527,636 + HMPREF1078_RS19700 0.58 -0.5
527,636 + HMPREF1078_RS19700 0.58 -1.4
527,639 + HMPREF1078_RS19700 0.59 -1.3
528,001 + -1.4
528,105 - +0.2
528,105 - -2.3
528,264 + HMPREF1078_RS02130 0.23 +2.5
528,265 - HMPREF1078_RS02130 0.23 +1.5
528,326 + HMPREF1078_RS02130 0.29 -0.8
528,338 + HMPREF1078_RS02130 0.30 -1.8
528,369 - HMPREF1078_RS02130 0.33 -0.5
528,393 + HMPREF1078_RS02130 0.35 +0.6
528,394 - HMPREF1078_RS02130 0.35 +0.9
528,424 - HMPREF1078_RS02130 0.38 -0.8
528,445 - HMPREF1078_RS02130 0.39 -2.5
528,473 - HMPREF1078_RS02130 0.42 +0.0
528,574 + HMPREF1078_RS02130 0.51 -2.7
528,576 + HMPREF1078_RS02130 0.51 -0.8
528,576 + HMPREF1078_RS02130 0.51 -1.6
528,576 + HMPREF1078_RS02130 0.51 +0.8
528,576 + HMPREF1078_RS02130 0.51 -1.2
528,577 - HMPREF1078_RS02130 0.51 -1.8
528,658 - HMPREF1078_RS02130 0.59 -1.6
528,658 - HMPREF1078_RS02130 0.59 -1.4
528,725 + HMPREF1078_RS02130 0.65 -1.3
528,726 - HMPREF1078_RS02130 0.65 -0.7
528,798 - HMPREF1078_RS02130 0.71 -0.8
528,802 + HMPREF1078_RS02130 0.71 -0.7
528,803 - HMPREF1078_RS02130 0.71 -0.9
528,803 - HMPREF1078_RS02130 0.71 -0.2
528,836 + HMPREF1078_RS02130 0.74 +0.8
528,867 - HMPREF1078_RS02130 0.77 -1.6
528,945 - HMPREF1078_RS02130 0.84 -0.9
528,945 - HMPREF1078_RS02130 0.84 -1.2
528,991 - HMPREF1078_RS02130 0.88 -0.4
528,999 - HMPREF1078_RS02130 0.89 -0.3
528,999 - HMPREF1078_RS02130 0.89 +0.2
529,020 + -1.8
529,021 - -0.2
529,026 - -0.6
529,027 + -0.1
529,068 - -1.3
529,092 + -1.9
529,093 - +0.4
529,095 + -1.1
529,097 + -2.3
529,098 - -0.3
529,098 - -0.8
529,098 - -0.9
529,099 + -0.1
529,100 - +0.1
529,155 - +0.4
529,190 - -0.7
529,241 + -1.1
529,247 - -0.8
529,260 + +0.3
529,304 - -1.9
529,310 + -1.9
529,353 + -0.1
529,354 - +1.6
529,354 - +0.1
529,393 + -0.6
529,440 + +1.8
529,440 + -0.9
529,441 - -0.7
529,441 - -0.2
529,442 + -3.8
529,443 - -2.3
529,486 + +0.3
529,487 - -1.4
529,652 + HMPREF1078_RS02135 0.13 -1.5
529,653 - HMPREF1078_RS02135 0.14 -2.1
529,654 + HMPREF1078_RS02135 0.14 -4.0
529,654 + HMPREF1078_RS02135 0.14 -1.0
529,654 + HMPREF1078_RS02135 0.14 +0.7
529,655 - HMPREF1078_RS02135 0.14 -0.0
529,655 - HMPREF1078_RS02135 0.14 +2.7
529,655 - HMPREF1078_RS02135 0.14 -0.2
529,655 - HMPREF1078_RS02135 0.14 +0.6
529,655 - HMPREF1078_RS02135 0.14 -1.9
529,655 - HMPREF1078_RS02135 0.14 -2.6
529,655 - HMPREF1078_RS02135 0.14 -2.0
529,659 - HMPREF1078_RS02135 0.14 -3.2
529,659 - HMPREF1078_RS02135 0.14 -2.8
529,659 - HMPREF1078_RS02135 0.14 -3.8
529,681 + HMPREF1078_RS02135 0.15 -2.0
529,764 - HMPREF1078_RS02135 0.18 -0.9
529,764 - HMPREF1078_RS02135 0.18 -1.3
529,774 - HMPREF1078_RS02135 0.18 -1.9
529,796 + HMPREF1078_RS02135 0.19 -3.6
529,796 + HMPREF1078_RS02135 0.19 -1.1
529,797 - HMPREF1078_RS02135 0.19 -2.2
529,814 - HMPREF1078_RS02135 0.20 -1.0
529,846 - HMPREF1078_RS02135 0.21 -3.1
530,065 - HMPREF1078_RS02135 0.30 -0.7

Or see this region's nucleotide sequence