Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01650

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01645 and HMPREF1078_RS01650 are separated by 5 nucleotidesHMPREF1078_RS01650 and HMPREF1078_RS01655 are separated by 102 nucleotides HMPREF1078_RS01645: HMPREF1078_RS01645 - tyrosine-protein kinase, at 414,411 to 416,786 _RS01645 HMPREF1078_RS01650: HMPREF1078_RS01650 - hypothetical protein, at 416,792 to 417,514 _RS01650 HMPREF1078_RS01655: HMPREF1078_RS01655 - cytochrome c peroxidase, at 417,617 to 418,996 _RS01655 Position (kb) 416 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.795 kb on - strand, within HMPREF1078_RS01645at 415.795 kb on - strand, within HMPREF1078_RS01645at 415.856 kb on + strand, within HMPREF1078_RS01645at 415.856 kb on + strand, within HMPREF1078_RS01645at 415.857 kb on - strand, within HMPREF1078_RS01645at 416.287 kb on + strand, within HMPREF1078_RS01645at 416.288 kb on - strand, within HMPREF1078_RS01645at 416.288 kb on - strand, within HMPREF1078_RS01645at 416.291 kb on + strand, within HMPREF1078_RS01645at 416.291 kb on + strand, within HMPREF1078_RS01645at 416.292 kb on - strand, within HMPREF1078_RS01645at 416.292 kb on - strand, within HMPREF1078_RS01645at 416.292 kb on - strand, within HMPREF1078_RS01645at 416.411 kb on + strand, within HMPREF1078_RS01645at 416.495 kb on + strand, within HMPREF1078_RS01645at 416.495 kb on + strand, within HMPREF1078_RS01645at 416.508 kb on + strand, within HMPREF1078_RS01645at 416.509 kb on - strand, within HMPREF1078_RS01645at 416.510 kb on + strand, within HMPREF1078_RS01645at 416.586 kb on + strandat 416.587 kb on - strandat 416.695 kb on - strandat 416.727 kb on + strandat 416.757 kb on + strandat 416.758 kb on - strandat 416.758 kb on - strandat 416.775 kb on - strandat 416.780 kb on + strandat 416.784 kb on + strandat 417.031 kb on + strand, within HMPREF1078_RS01650at 417.031 kb on + strand, within HMPREF1078_RS01650at 417.032 kb on - strand, within HMPREF1078_RS01650at 417.080 kb on + strand, within HMPREF1078_RS01650at 417.082 kb on + strand, within HMPREF1078_RS01650at 417.082 kb on + strand, within HMPREF1078_RS01650at 417.083 kb on - strand, within HMPREF1078_RS01650at 417.131 kb on + strand, within HMPREF1078_RS01650at 417.165 kb on - strand, within HMPREF1078_RS01650at 417.165 kb on - strand, within HMPREF1078_RS01650at 417.201 kb on - strand, within HMPREF1078_RS01650at 417.222 kb on - strand, within HMPREF1078_RS01650at 417.251 kb on + strand, within HMPREF1078_RS01650at 417.252 kb on - strand, within HMPREF1078_RS01650at 417.253 kb on + strand, within HMPREF1078_RS01650at 417.254 kb on - strand, within HMPREF1078_RS01650at 417.254 kb on - strand, within HMPREF1078_RS01650at 417.254 kb on - strand, within HMPREF1078_RS01650at 417.254 kb on - strand, within HMPREF1078_RS01650at 417.257 kb on + strand, within HMPREF1078_RS01650at 417.257 kb on + strand, within HMPREF1078_RS01650at 417.257 kb on + strand, within HMPREF1078_RS01650at 417.257 kb on + strand, within HMPREF1078_RS01650at 417.258 kb on - strand, within HMPREF1078_RS01650at 417.258 kb on - strand, within HMPREF1078_RS01650at 417.258 kb on - strand, within HMPREF1078_RS01650at 417.258 kb on - strand, within HMPREF1078_RS01650at 417.258 kb on - strand, within HMPREF1078_RS01650at 417.259 kb on + strand, within HMPREF1078_RS01650at 417.300 kb on - strand, within HMPREF1078_RS01650at 417.300 kb on - strand, within HMPREF1078_RS01650at 417.339 kb on - strand, within HMPREF1078_RS01650at 417.368 kb on + strand, within HMPREF1078_RS01650at 417.428 kb on + strand, within HMPREF1078_RS01650at 417.519 kb on + strandat 417.520 kb on - strandat 417.537 kb on + strandat 417.580 kb on - strandat 417.580 kb on - strandat 417.613 kb on - strandat 417.716 kb on + strandat 417.717 kb on - strandat 417.717 kb on - strandat 417.807 kb on - strand, within HMPREF1078_RS01655at 418.085 kb on - strand, within HMPREF1078_RS01655at 418.178 kb on + strand, within HMPREF1078_RS01655at 418.222 kb on + strand, within HMPREF1078_RS01655at 418.222 kb on + strand, within HMPREF1078_RS01655at 418.223 kb on - strand, within HMPREF1078_RS01655at 418.265 kb on + strand, within HMPREF1078_RS01655at 418.266 kb on - strand, within HMPREF1078_RS01655at 418.278 kb on + strand, within HMPREF1078_RS01655at 418.317 kb on - strand, within HMPREF1078_RS01655at 418.317 kb on - strand, within HMPREF1078_RS01655at 418.319 kb on - strand, within HMPREF1078_RS01655at 418.319 kb on - strand, within HMPREF1078_RS01655at 418.456 kb on + strand, within HMPREF1078_RS01655at 418.510 kb on + strand, within HMPREF1078_RS01655at 418.510 kb on + strand, within HMPREF1078_RS01655

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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415,795 - HMPREF1078_RS01645 0.58 -2.4
415,795 - HMPREF1078_RS01645 0.58 -0.1
415,856 + HMPREF1078_RS01645 0.61 +1.0
415,856 + HMPREF1078_RS01645 0.61 -1.3
415,857 - HMPREF1078_RS01645 0.61 -2.8
416,287 + HMPREF1078_RS01645 0.79 +1.8
416,288 - HMPREF1078_RS01645 0.79 +0.1
416,288 - HMPREF1078_RS01645 0.79 +1.2
416,291 + HMPREF1078_RS01645 0.79 +2.0
416,291 + HMPREF1078_RS01645 0.79 -2.3
416,292 - HMPREF1078_RS01645 0.79 +0.0
416,292 - HMPREF1078_RS01645 0.79 +0.8
416,292 - HMPREF1078_RS01645 0.79 -0.0
416,411 + HMPREF1078_RS01645 0.84 +0.1
416,495 + HMPREF1078_RS01645 0.88 +1.5
416,495 + HMPREF1078_RS01645 0.88 -1.8
416,508 + HMPREF1078_RS01645 0.88 -0.0
416,509 - HMPREF1078_RS01645 0.88 -0.0
416,510 + HMPREF1078_RS01645 0.88 +0.7
416,586 + -0.7
416,587 - +0.4
416,695 - -0.2
416,727 + -0.5
416,757 + +1.8
416,758 - -0.2
416,758 - -1.4
416,775 - +0.7
416,780 + -0.2
416,784 + -0.3
417,031 + HMPREF1078_RS01650 0.33 +0.8
417,031 + HMPREF1078_RS01650 0.33 +0.1
417,032 - HMPREF1078_RS01650 0.33 +0.5
417,080 + HMPREF1078_RS01650 0.40 -1.4
417,082 + HMPREF1078_RS01650 0.40 -0.1
417,082 + HMPREF1078_RS01650 0.40 +0.6
417,083 - HMPREF1078_RS01650 0.40 +0.0
417,131 + HMPREF1078_RS01650 0.47 -0.8
417,165 - HMPREF1078_RS01650 0.52 -0.7
417,165 - HMPREF1078_RS01650 0.52 -0.2
417,201 - HMPREF1078_RS01650 0.57 -0.5
417,222 - HMPREF1078_RS01650 0.59 -0.4
417,251 + HMPREF1078_RS01650 0.63 -0.7
417,252 - HMPREF1078_RS01650 0.64 -0.9
417,253 + HMPREF1078_RS01650 0.64 +0.8
417,254 - HMPREF1078_RS01650 0.64 -0.9
417,254 - HMPREF1078_RS01650 0.64 -0.1
417,254 - HMPREF1078_RS01650 0.64 -1.2
417,254 - HMPREF1078_RS01650 0.64 -0.1
417,257 + HMPREF1078_RS01650 0.64 -2.6
417,257 + HMPREF1078_RS01650 0.64 -0.1
417,257 + HMPREF1078_RS01650 0.64 -0.8
417,257 + HMPREF1078_RS01650 0.64 +0.6
417,258 - HMPREF1078_RS01650 0.64 -0.3
417,258 - HMPREF1078_RS01650 0.64 +0.1
417,258 - HMPREF1078_RS01650 0.64 -2.7
417,258 - HMPREF1078_RS01650 0.64 -0.0
417,258 - HMPREF1078_RS01650 0.64 -2.2
417,259 + HMPREF1078_RS01650 0.65 +0.5
417,300 - HMPREF1078_RS01650 0.70 -2.1
417,300 - HMPREF1078_RS01650 0.70 +1.3
417,339 - HMPREF1078_RS01650 0.76 -1.7
417,368 + HMPREF1078_RS01650 0.80 -1.0
417,428 + HMPREF1078_RS01650 0.88 +0.0
417,519 + -0.4
417,520 - -0.2
417,537 + +0.4
417,580 - +0.7
417,580 - +1.5
417,613 - +1.0
417,716 + -1.1
417,717 - +1.2
417,717 - -1.0
417,807 - HMPREF1078_RS01655 0.14 -1.4
418,085 - HMPREF1078_RS01655 0.34 -0.4
418,178 + HMPREF1078_RS01655 0.41 -0.2
418,222 + HMPREF1078_RS01655 0.44 -0.0
418,222 + HMPREF1078_RS01655 0.44 -2.3
418,223 - HMPREF1078_RS01655 0.44 +0.8
418,265 + HMPREF1078_RS01655 0.47 -2.1
418,266 - HMPREF1078_RS01655 0.47 -1.3
418,278 + HMPREF1078_RS01655 0.48 -1.0
418,317 - HMPREF1078_RS01655 0.51 -0.0
418,317 - HMPREF1078_RS01655 0.51 +0.8
418,319 - HMPREF1078_RS01655 0.51 +0.8
418,319 - HMPREF1078_RS01655 0.51 -1.6
418,456 + HMPREF1078_RS01655 0.61 -0.1
418,510 + HMPREF1078_RS01655 0.65 +0.1
418,510 + HMPREF1078_RS01655 0.65 -0.5

Or see this region's nucleotide sequence