Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01445 and HMPREF1078_RS01450 are separated by 130 nucleotides HMPREF1078_RS01450 and HMPREF1078_RS01455 are separated by 118 nucleotides HMPREF1078_RS01455 and HMPREF1078_RS01460 are separated by 39 nucleotides
HMPREF1078_RS01445: HMPREF1078_RS01445 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 370,611 to 374,606
_RS01445
HMPREF1078_RS01450: HMPREF1078_RS01450 - cytochrome c biogenesis protein CcsA, at 374,737 to 377,172
_RS01450
HMPREF1078_RS01455: HMPREF1078_RS01455 - hypothetical protein, at 377,291 to 377,605
_RS01455
HMPREF1078_RS01460: HMPREF1078_RS01460 - dihydroxyacetone kinase subunit DhaK, at 377,645 to 378,661
_RS01460
Position (kb) 374
375
376
377
378 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 373.854 kb on - strand, within HMPREF1078_RS01445 at 374.181 kb on + strand, within HMPREF1078_RS01445 at 374.261 kb on - strand at 374.296 kb on - strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.304 kb on + strand at 374.305 kb on - strand at 374.306 kb on + strand at 374.307 kb on - strand at 374.371 kb on - strand at 374.394 kb on + strand at 374.395 kb on - strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.436 kb on + strand at 374.440 kb on + strand at 374.440 kb on + strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.441 kb on - strand at 374.505 kb on + strand at 374.506 kb on - strand at 374.507 kb on + strand at 374.524 kb on - strand at 374.551 kb on - strand at 374.620 kb on + strand at 374.620 kb on + strand at 374.621 kb on - strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.627 kb on + strand at 374.628 kb on - strand at 374.690 kb on + strand at 374.699 kb on + strand at 374.700 kb on - strand at 374.700 kb on - strand at 374.723 kb on + strand at 374.724 kb on - strand at 374.800 kb on + strand at 374.800 kb on + strand at 374.848 kb on - strand at 374.873 kb on - strand at 374.923 kb on - strand at 375.118 kb on - strand, within HMPREF1078_RS01450 at 375.257 kb on + strand, within HMPREF1078_RS01450 at 375.362 kb on - strand, within HMPREF1078_RS01450 at 375.412 kb on - strand, within HMPREF1078_RS01450 at 375.426 kb on + strand, within HMPREF1078_RS01450 at 375.474 kb on - strand, within HMPREF1078_RS01450 at 375.515 kb on + strand, within HMPREF1078_RS01450 at 375.627 kb on + strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.663 kb on - strand, within HMPREF1078_RS01450 at 375.666 kb on + strand, within HMPREF1078_RS01450 at 375.667 kb on - strand, within HMPREF1078_RS01450 at 375.675 kb on + strand, within HMPREF1078_RS01450 at 375.685 kb on - strand, within HMPREF1078_RS01450 at 375.796 kb on + strand, within HMPREF1078_RS01450 at 375.797 kb on - strand, within HMPREF1078_RS01450 at 375.824 kb on - strand, within HMPREF1078_RS01450 at 375.825 kb on + strand, within HMPREF1078_RS01450 at 375.883 kb on + strand, within HMPREF1078_RS01450 at 375.883 kb on + strand, within HMPREF1078_RS01450 at 375.885 kb on + strand, within HMPREF1078_RS01450 at 375.885 kb on + strand, within HMPREF1078_RS01450 at 375.907 kb on - strand, within HMPREF1078_RS01450 at 376.017 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.024 kb on + strand, within HMPREF1078_RS01450 at 376.025 kb on - strand, within HMPREF1078_RS01450 at 376.096 kb on + strand, within HMPREF1078_RS01450 at 376.101 kb on - strand, within HMPREF1078_RS01450 at 376.101 kb on - strand, within HMPREF1078_RS01450 at 376.238 kb on - strand, within HMPREF1078_RS01450 at 376.276 kb on + strand, within HMPREF1078_RS01450 at 376.283 kb on - strand, within HMPREF1078_RS01450 at 376.355 kb on + strand, within HMPREF1078_RS01450 at 376.365 kb on - strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.398 kb on + strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.399 kb on - strand, within HMPREF1078_RS01450 at 376.471 kb on + strand, within HMPREF1078_RS01450 at 376.472 kb on - strand, within HMPREF1078_RS01450 at 376.519 kb on - strand, within HMPREF1078_RS01450 at 376.711 kb on - strand, within HMPREF1078_RS01450 at 376.765 kb on - strand, within HMPREF1078_RS01450 at 376.779 kb on + strand, within HMPREF1078_RS01450 at 376.966 kb on - strand at 377.039 kb on - strand at 377.090 kb on + strand at 377.090 kb on + strand at 377.091 kb on - strand at 377.091 kb on - strand at 377.098 kb on + strand at 377.104 kb on + strand at 377.104 kb on + strand at 377.105 kb on - strand at 377.105 kb on - strand at 377.120 kb on + strand at 377.146 kb on + strand at 377.177 kb on + strand at 377.177 kb on + strand at 377.178 kb on - strand at 377.179 kb on + strand at 377.179 kb on + strand at 377.179 kb on + strand at 377.180 kb on - strand at 377.223 kb on + strand at 377.224 kb on - strand at 377.283 kb on - strand at 377.283 kb on - strand at 377.287 kb on - strand at 377.335 kb on - strand, within HMPREF1078_RS01455 at 377.345 kb on - strand, within HMPREF1078_RS01455 at 377.345 kb on - strand, within HMPREF1078_RS01455 at 377.367 kb on + strand, within HMPREF1078_RS01455 at 377.382 kb on - strand, within HMPREF1078_RS01455 at 377.406 kb on - strand, within HMPREF1078_RS01455 at 377.448 kb on + strand, within HMPREF1078_RS01455 at 377.471 kb on + strand, within HMPREF1078_RS01455 at 377.472 kb on - strand, within HMPREF1078_RS01455 at 377.472 kb on - strand, within HMPREF1078_RS01455 at 377.532 kb on + strand, within HMPREF1078_RS01455 at 377.613 kb on - strand at 377.615 kb on + strand at 377.616 kb on - strand at 377.621 kb on - strand at 377.621 kb on - strand at 377.621 kb on - strand at 377.624 kb on + strand at 377.624 kb on + strand at 377.624 kb on + strand at 377.639 kb on + strand at 377.640 kb on - strand at 377.640 kb on - strand at 377.641 kb on + strand at 377.641 kb on + strand at 377.642 kb on - strand at 377.711 kb on + strand at 377.711 kb on + strand at 377.712 kb on - strand at 377.712 kb on - strand at 377.715 kb on + strand at 377.715 kb on + strand at 377.716 kb on - strand at 377.716 kb on - strand at 377.742 kb on + strand at 377.743 kb on - strand at 377.743 kb on - strand at 377.763 kb on + strand, within HMPREF1078_RS01460 at 377.858 kb on - strand, within HMPREF1078_RS01460 at 378.024 kb on + strand, within HMPREF1078_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 373,854 - HMPREF1078_RS01445 0.81 -0.6 374,181 + HMPREF1078_RS01445 0.89 -0.4 374,261 - -1.1 374,296 - +0.5 374,301 + +1.1 374,301 + +0.8 374,304 + +1.9 374,305 - +1.9 374,306 + -0.9 374,307 - +1.5 374,371 - -0.2 374,394 + +0.8 374,395 - +0.5 374,436 + +0.6 374,436 + +2.6 374,436 + -0.1 374,440 + +1.6 374,440 + +1.3 374,441 - -0.5 374,441 - +1.0 374,441 - -0.9 374,441 - +1.0 374,505 + +0.8 374,506 - +1.3 374,507 + +0.2 374,524 - -0.7 374,551 - +0.8 374,620 + -1.5 374,620 + +1.1 374,621 - +1.4 374,627 + +0.2 374,627 + -0.4 374,627 + +2.0 374,628 - +0.3 374,690 + -0.4 374,699 + -0.9 374,700 - -1.5 374,700 - -2.4 374,723 + -1.5 374,724 - -0.5 374,800 + +0.7 374,800 + -2.1 374,848 - -0.4 374,873 - -1.4 374,923 - -0.1 375,118 - HMPREF1078_RS01450 0.16 -0.0 375,257 + HMPREF1078_RS01450 0.21 -4.8 375,362 - HMPREF1078_RS01450 0.26 -0.9 375,412 - HMPREF1078_RS01450 0.28 +1.6 375,426 + HMPREF1078_RS01450 0.28 -1.5 375,474 - HMPREF1078_RS01450 0.30 -1.2 375,515 + HMPREF1078_RS01450 0.32 +0.5 375,627 + HMPREF1078_RS01450 0.37 -2.4 375,663 - HMPREF1078_RS01450 0.38 -0.8 375,663 - HMPREF1078_RS01450 0.38 -0.1 375,663 - HMPREF1078_RS01450 0.38 -3.6 375,666 + HMPREF1078_RS01450 0.38 -1.9 375,667 - HMPREF1078_RS01450 0.38 -1.8 375,675 + HMPREF1078_RS01450 0.39 -0.9 375,685 - HMPREF1078_RS01450 0.39 -0.1 375,796 + HMPREF1078_RS01450 0.43 -2.4 375,797 - HMPREF1078_RS01450 0.44 +0.0 375,824 - HMPREF1078_RS01450 0.45 -1.7 375,825 + HMPREF1078_RS01450 0.45 +0.2 375,883 + HMPREF1078_RS01450 0.47 +0.6 375,883 + HMPREF1078_RS01450 0.47 -2.0 375,885 + HMPREF1078_RS01450 0.47 -1.0 375,885 + HMPREF1078_RS01450 0.47 -2.9 375,907 - HMPREF1078_RS01450 0.48 +0.2 376,017 + HMPREF1078_RS01450 0.53 -1.5 376,024 + HMPREF1078_RS01450 0.53 -1.1 376,024 + HMPREF1078_RS01450 0.53 -2.6 376,024 + HMPREF1078_RS01450 0.53 -0.8 376,025 - HMPREF1078_RS01450 0.53 +0.5 376,096 + HMPREF1078_RS01450 0.56 -2.2 376,101 - HMPREF1078_RS01450 0.56 -2.6 376,101 - HMPREF1078_RS01450 0.56 -0.4 376,238 - HMPREF1078_RS01450 0.62 -1.3 376,276 + HMPREF1078_RS01450 0.63 -2.0 376,283 - HMPREF1078_RS01450 0.63 -3.3 376,355 + HMPREF1078_RS01450 0.66 -0.7 376,365 - HMPREF1078_RS01450 0.67 -1.9 376,398 + HMPREF1078_RS01450 0.68 -3.7 376,398 + HMPREF1078_RS01450 0.68 +1.2 376,398 + HMPREF1078_RS01450 0.68 +0.1 376,399 - HMPREF1078_RS01450 0.68 -3.3 376,399 - HMPREF1078_RS01450 0.68 -1.5 376,399 - HMPREF1078_RS01450 0.68 +0.1 376,471 + HMPREF1078_RS01450 0.71 +0.1 376,472 - HMPREF1078_RS01450 0.71 -1.1 376,519 - HMPREF1078_RS01450 0.73 -2.4 376,711 - HMPREF1078_RS01450 0.81 -0.6 376,765 - HMPREF1078_RS01450 0.83 -1.5 376,779 + HMPREF1078_RS01450 0.84 -1.5 376,966 - -1.9 377,039 - +0.3 377,090 + +2.7 377,090 + -0.7 377,091 - +0.5 377,091 - +0.8 377,098 + +1.6 377,104 + -0.2 377,104 + +0.6 377,105 - -0.9 377,105 - -1.3 377,120 + +0.6 377,146 + +0.5 377,177 + -0.2 377,177 + +0.2 377,178 - +0.6 377,179 + +1.0 377,179 + +1.0 377,179 + +1.4 377,180 - -1.9 377,223 + +0.2 377,224 - +0.3 377,283 - +1.4 377,283 - -0.6 377,287 - -1.9 377,335 - HMPREF1078_RS01455 0.14 -1.3 377,345 - HMPREF1078_RS01455 0.17 -0.5 377,345 - HMPREF1078_RS01455 0.17 -2.3 377,367 + HMPREF1078_RS01455 0.24 +1.3 377,382 - HMPREF1078_RS01455 0.29 -2.5 377,406 - HMPREF1078_RS01455 0.37 -0.7 377,448 + HMPREF1078_RS01455 0.50 -0.2 377,471 + HMPREF1078_RS01455 0.57 -0.9 377,472 - HMPREF1078_RS01455 0.57 -0.9 377,472 - HMPREF1078_RS01455 0.57 +0.5 377,532 + HMPREF1078_RS01455 0.77 -0.2 377,613 - +1.0 377,615 + +0.8 377,616 - +1.1 377,621 - +0.2 377,621 - +1.2 377,621 - +0.7 377,624 + +0.1 377,624 + -0.5 377,624 + +0.8 377,639 + +0.7 377,640 - -0.0 377,640 - -0.5 377,641 + -1.7 377,641 + -0.9 377,642 - -0.5 377,711 + -0.8 377,711 + +0.5 377,712 - +3.8 377,712 - -2.7 377,715 + -1.6 377,715 + +0.6 377,716 - +1.3 377,716 - +2.0 377,742 + +0.0 377,743 - -0.9 377,743 - +1.0 377,763 + HMPREF1078_RS01460 0.12 +0.5 377,858 - HMPREF1078_RS01460 0.21 -1.2 378,024 + HMPREF1078_RS01460 0.37 +1.2
Or see this region's nucleotide sequence