Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01375 and HMPREF1078_RS01380 are separated by 86 nucleotides HMPREF1078_RS01380 and HMPREF1078_RS01385 are separated by 2 nucleotides HMPREF1078_RS01385 and HMPREF1078_RS01390 are separated by 226 nucleotides
HMPREF1078_RS01375: HMPREF1078_RS01375 - Xaa-Pro peptidase family protein, at 355,948 to 357,126
_RS01375
HMPREF1078_RS01380: HMPREF1078_RS01380 - M48 family metallopeptidase, at 357,213 to 358,181
_RS01380
HMPREF1078_RS01385: HMPREF1078_RS01385 - LemA family protein, at 358,184 to 358,741
_RS01385
HMPREF1078_RS01390: HMPREF1078_RS01390 - DUF418 domain-containing protein, at 358,968 to 360,173
_RS01390
Position (kb) 357
358
359 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 356.233 kb on + strand, within HMPREF1078_RS01375 at 356.373 kb on + strand, within HMPREF1078_RS01375 at 356.375 kb on + strand, within HMPREF1078_RS01375 at 356.375 kb on + strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.376 kb on - strand, within HMPREF1078_RS01375 at 356.385 kb on - strand, within HMPREF1078_RS01375 at 356.401 kb on + strand, within HMPREF1078_RS01375 at 356.402 kb on - strand, within HMPREF1078_RS01375 at 356.530 kb on - strand, within HMPREF1078_RS01375 at 356.530 kb on - strand, within HMPREF1078_RS01375 at 356.548 kb on + strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.551 kb on - strand, within HMPREF1078_RS01375 at 356.554 kb on - strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.669 kb on + strand, within HMPREF1078_RS01375 at 356.670 kb on - strand, within HMPREF1078_RS01375 at 356.670 kb on - strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.800 kb on + strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.801 kb on - strand, within HMPREF1078_RS01375 at 356.802 kb on + strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.803 kb on - strand, within HMPREF1078_RS01375 at 356.813 kb on + strand, within HMPREF1078_RS01375 at 356.813 kb on + strand, within HMPREF1078_RS01375 at 356.814 kb on - strand, within HMPREF1078_RS01375 at 356.978 kb on + strand, within HMPREF1078_RS01375 at 356.979 kb on - strand, within HMPREF1078_RS01375 at 356.992 kb on - strand, within HMPREF1078_RS01375 at 356.992 kb on - strand, within HMPREF1078_RS01375 at 356.993 kb on + strand, within HMPREF1078_RS01375 at 356.994 kb on - strand, within HMPREF1078_RS01375 at 356.997 kb on + strand, within HMPREF1078_RS01375 at 356.997 kb on + strand, within HMPREF1078_RS01375 at 356.997 kb on + strand, within HMPREF1078_RS01375 at 356.998 kb on - strand, within HMPREF1078_RS01375 at 357.011 kb on + strand at 357.011 kb on + strand at 357.012 kb on - strand at 357.023 kb on - strand at 357.077 kb on - strand at 357.077 kb on - strand at 357.077 kb on - strand at 357.096 kb on + strand at 357.097 kb on - strand at 357.122 kb on - strand at 357.198 kb on - strand at 357.234 kb on + strand at 357.277 kb on - strand at 357.334 kb on - strand, within HMPREF1078_RS01380 at 357.334 kb on - strand, within HMPREF1078_RS01380 at 357.519 kb on + strand, within HMPREF1078_RS01380 at 357.577 kb on + strand, within HMPREF1078_RS01380 at 357.581 kb on - strand, within HMPREF1078_RS01380 at 357.754 kb on + strand, within HMPREF1078_RS01380 at 357.842 kb on + strand, within HMPREF1078_RS01380 at 357.842 kb on + strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.843 kb on - strand, within HMPREF1078_RS01380 at 357.846 kb on + strand, within HMPREF1078_RS01380 at 357.846 kb on + strand, within HMPREF1078_RS01380 at 357.858 kb on + strand, within HMPREF1078_RS01380 at 357.865 kb on + strand, within HMPREF1078_RS01380 at 357.866 kb on - strand, within HMPREF1078_RS01380 at 357.866 kb on - strand, within HMPREF1078_RS01380 at 357.941 kb on - strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.957 kb on + strand, within HMPREF1078_RS01380 at 357.963 kb on + strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.964 kb on - strand, within HMPREF1078_RS01380 at 357.975 kb on + strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.976 kb on - strand, within HMPREF1078_RS01380 at 357.979 kb on + strand, within HMPREF1078_RS01380 at 357.979 kb on + strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 357.980 kb on - strand, within HMPREF1078_RS01380 at 358.164 kb on + strand at 358.165 kb on - strand at 358.174 kb on + strand at 358.175 kb on - strand at 358.175 kb on - strand at 358.175 kb on - strand at 358.185 kb on + strand at 358.248 kb on + strand, within HMPREF1078_RS01385 at 358.567 kb on - strand, within HMPREF1078_RS01385 at 358.622 kb on + strand, within HMPREF1078_RS01385 at 358.721 kb on + strand at 358.737 kb on + strand at 358.775 kb on + strand at 358.775 kb on + strand at 358.811 kb on + strand at 358.888 kb on + strand at 359.007 kb on - strand at 359.007 kb on - strand at 359.084 kb on + strand at 359.154 kb on - strand, within HMPREF1078_RS01390
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 356,233 + HMPREF1078_RS01375 0.24 +0.3 356,373 + HMPREF1078_RS01375 0.36 -0.3 356,375 + HMPREF1078_RS01375 0.36 -1.3 356,375 + HMPREF1078_RS01375 0.36 -1.4 356,376 - HMPREF1078_RS01375 0.36 +0.7 356,376 - HMPREF1078_RS01375 0.36 -2.3 356,376 - HMPREF1078_RS01375 0.36 -0.1 356,385 - HMPREF1078_RS01375 0.37 +1.2 356,401 + HMPREF1078_RS01375 0.38 -2.9 356,402 - HMPREF1078_RS01375 0.39 -1.4 356,530 - HMPREF1078_RS01375 0.49 +0.6 356,530 - HMPREF1078_RS01375 0.49 -0.8 356,548 + HMPREF1078_RS01375 0.51 -0.6 356,551 - HMPREF1078_RS01375 0.51 +0.7 356,551 - HMPREF1078_RS01375 0.51 +0.1 356,551 - HMPREF1078_RS01375 0.51 -0.4 356,554 - HMPREF1078_RS01375 0.51 -0.1 356,669 + HMPREF1078_RS01375 0.61 +0.7 356,669 + HMPREF1078_RS01375 0.61 +0.8 356,669 + HMPREF1078_RS01375 0.61 -0.8 356,670 - HMPREF1078_RS01375 0.61 -0.3 356,670 - HMPREF1078_RS01375 0.61 -1.0 356,800 + HMPREF1078_RS01375 0.72 +0.7 356,800 + HMPREF1078_RS01375 0.72 +1.7 356,800 + HMPREF1078_RS01375 0.72 -2.8 356,800 + HMPREF1078_RS01375 0.72 -0.7 356,801 - HMPREF1078_RS01375 0.72 +0.3 356,801 - HMPREF1078_RS01375 0.72 -1.1 356,801 - HMPREF1078_RS01375 0.72 -3.3 356,801 - HMPREF1078_RS01375 0.72 -0.2 356,801 - HMPREF1078_RS01375 0.72 +0.6 356,802 + HMPREF1078_RS01375 0.72 +1.2 356,803 - HMPREF1078_RS01375 0.73 +1.2 356,803 - HMPREF1078_RS01375 0.73 +0.6 356,803 - HMPREF1078_RS01375 0.73 -1.5 356,813 + HMPREF1078_RS01375 0.73 +0.2 356,813 + HMPREF1078_RS01375 0.73 -0.7 356,814 - HMPREF1078_RS01375 0.73 -2.5 356,978 + HMPREF1078_RS01375 0.87 -1.6 356,979 - HMPREF1078_RS01375 0.87 -1.6 356,992 - HMPREF1078_RS01375 0.89 +1.8 356,992 - HMPREF1078_RS01375 0.89 -1.1 356,993 + HMPREF1078_RS01375 0.89 -1.1 356,994 - HMPREF1078_RS01375 0.89 -1.7 356,997 + HMPREF1078_RS01375 0.89 +1.3 356,997 + HMPREF1078_RS01375 0.89 -0.3 356,997 + HMPREF1078_RS01375 0.89 -3.4 356,998 - HMPREF1078_RS01375 0.89 +0.6 357,011 + -0.9 357,011 + -0.8 357,012 - -0.8 357,023 - -0.3 357,077 - -0.0 357,077 - -2.3 357,077 - -0.6 357,096 + +0.2 357,097 - -1.0 357,122 - -0.2 357,198 - -0.5 357,234 + +0.0 357,277 - +1.0 357,334 - HMPREF1078_RS01380 0.12 +1.1 357,334 - HMPREF1078_RS01380 0.12 +0.6 357,519 + HMPREF1078_RS01380 0.32 +0.2 357,577 + HMPREF1078_RS01380 0.38 -0.5 357,581 - HMPREF1078_RS01380 0.38 -1.2 357,754 + HMPREF1078_RS01380 0.56 -0.3 357,842 + HMPREF1078_RS01380 0.65 -0.5 357,842 + HMPREF1078_RS01380 0.65 +0.9 357,843 - HMPREF1078_RS01380 0.65 +0.3 357,843 - HMPREF1078_RS01380 0.65 -1.6 357,843 - HMPREF1078_RS01380 0.65 -0.4 357,843 - HMPREF1078_RS01380 0.65 +1.0 357,843 - HMPREF1078_RS01380 0.65 +0.8 357,846 + HMPREF1078_RS01380 0.65 +1.0 357,846 + HMPREF1078_RS01380 0.65 -1.4 357,858 + HMPREF1078_RS01380 0.67 -0.1 357,865 + HMPREF1078_RS01380 0.67 +0.8 357,866 - HMPREF1078_RS01380 0.67 -1.5 357,866 - HMPREF1078_RS01380 0.67 -1.3 357,941 - HMPREF1078_RS01380 0.75 -2.5 357,957 + HMPREF1078_RS01380 0.77 -2.0 357,957 + HMPREF1078_RS01380 0.77 -1.3 357,957 + HMPREF1078_RS01380 0.77 +3.6 357,963 + HMPREF1078_RS01380 0.77 -0.9 357,964 - HMPREF1078_RS01380 0.78 -2.4 357,964 - HMPREF1078_RS01380 0.78 +0.4 357,964 - HMPREF1078_RS01380 0.78 +2.8 357,975 + HMPREF1078_RS01380 0.79 +0.5 357,976 - HMPREF1078_RS01380 0.79 -1.1 357,976 - HMPREF1078_RS01380 0.79 -0.6 357,976 - HMPREF1078_RS01380 0.79 +1.0 357,979 + HMPREF1078_RS01380 0.79 -0.8 357,979 + HMPREF1078_RS01380 0.79 +0.2 357,980 - HMPREF1078_RS01380 0.79 +0.6 357,980 - HMPREF1078_RS01380 0.79 -1.0 357,980 - HMPREF1078_RS01380 0.79 -0.1 358,164 + -1.6 358,165 - +0.7 358,174 + +0.4 358,175 - -1.4 358,175 - -0.9 358,175 - +0.9 358,185 + +0.2 358,248 + HMPREF1078_RS01385 0.11 +1.1 358,567 - HMPREF1078_RS01385 0.69 +0.6 358,622 + HMPREF1078_RS01385 0.78 +0.1 358,721 + +0.6 358,737 + -0.4 358,775 + -0.4 358,775 + +0.3 358,811 + -4.1 358,888 + -0.1 359,007 - +0.1 359,007 - +0.8 359,084 + -0.4 359,154 - HMPREF1078_RS01390 0.15 +1.4
Or see this region's nucleotide sequence