Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01120 and HMPREF1078_RS01125 are separated by 102 nucleotides HMPREF1078_RS01125 and HMPREF1078_RS01130 are separated by 87 nucleotides
HMPREF1078_RS01120: HMPREF1078_RS01120 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 281,410 to 282,183
_RS01120
HMPREF1078_RS01125: HMPREF1078_RS01125 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 282,286 to 283,356
_RS01125
HMPREF1078_RS01130: HMPREF1078_RS01130 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 283,444 to 284,631
_RS01130
Position (kb) 282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 281.295 kb on + strand at 281.295 kb on + strand at 281.300 kb on + strand at 281.301 kb on - strand at 281.311 kb on + strand at 281.316 kb on - strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.382 kb on - strand at 281.398 kb on + strand at 281.398 kb on + strand at 281.408 kb on + strand at 281.441 kb on + strand at 281.561 kb on + strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.595 kb on - strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.719 kb on - strand, within HMPREF1078_RS01120 at 281.721 kb on - strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.731 kb on - strand, within HMPREF1078_RS01120 at 281.734 kb on + strand, within HMPREF1078_RS01120 at 281.735 kb on - strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.751 kb on - strand, within HMPREF1078_RS01120 at 281.755 kb on - strand, within HMPREF1078_RS01120 at 281.767 kb on + strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.863 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.937 kb on + strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.942 kb on + strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.954 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.988 kb on - strand, within HMPREF1078_RS01120 at 281.992 kb on + strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.103 kb on + strand, within HMPREF1078_RS01120 at 282.109 kb on + strand at 282.109 kb on + strand at 282.126 kb on + strand at 282.130 kb on + strand at 282.131 kb on - strand at 282.169 kb on + strand at 282.176 kb on - strand at 282.190 kb on + strand at 282.190 kb on + strand at 282.191 kb on - strand at 282.204 kb on - strand at 282.204 kb on - strand at 282.206 kb on + strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.218 kb on - strand at 282.220 kb on + strand at 282.220 kb on - strand at 282.221 kb on - strand at 282.240 kb on + strand at 282.262 kb on + strand at 282.263 kb on - strand at 282.265 kb on + strand at 282.266 kb on - strand at 282.266 kb on - strand at 282.281 kb on + strand at 282.282 kb on - strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.285 kb on - strand at 282.285 kb on - strand at 282.287 kb on + strand at 282.288 kb on - strand at 282.392 kb on + strand at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.490 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.614 kb on - strand, within HMPREF1078_RS01125 at 282.811 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.899 kb on + strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 283.027 kb on - strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125 at 283.258 kb on + strand at 283.259 kb on - strand at 283.281 kb on + strand at 283.298 kb on - strand at 283.303 kb on - strand at 283.318 kb on + strand at 283.319 kb on - strand at 283.362 kb on + strand at 283.363 kb on - strand at 283.374 kb on + strand at 283.375 kb on - strand at 283.380 kb on - strand at 283.387 kb on - strand at 283.387 kb on - strand at 283.389 kb on - strand at 283.393 kb on + strand at 283.401 kb on - strand at 283.413 kb on + strand at 283.429 kb on + strand at 283.430 kb on - strand at 283.430 kb on - strand at 283.433 kb on + strand at 283.433 kb on + strand at 283.434 kb on - strand at 283.434 kb on - strand at 283.434 kb on - strand at 283.441 kb on - strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.466 kb on - strand at 283.501 kb on - strand at 283.515 kb on + strand at 283.516 kb on - strand at 283.516 kb on - strand at 283.524 kb on - strand at 283.561 kb on + strand at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.647 kb on + strand, within HMPREF1078_RS01130 at 283.648 kb on - strand, within HMPREF1078_RS01130 at 283.651 kb on + strand, within HMPREF1078_RS01130 at 283.651 kb on + strand, within HMPREF1078_RS01130 at 283.652 kb on - strand, within HMPREF1078_RS01130 at 283.721 kb on + strand, within HMPREF1078_RS01130 at 283.724 kb on - strand, within HMPREF1078_RS01130 at 283.734 kb on + strand, within HMPREF1078_RS01130 at 283.734 kb on + strand, within HMPREF1078_RS01130 at 283.735 kb on - strand, within HMPREF1078_RS01130 at 283.743 kb on - strand, within HMPREF1078_RS01130 at 283.743 kb on - strand, within HMPREF1078_RS01130 at 283.822 kb on + strand, within HMPREF1078_RS01130 at 283.841 kb on - strand, within HMPREF1078_RS01130 at 283.872 kb on + strand, within HMPREF1078_RS01130 at 283.887 kb on + strand, within HMPREF1078_RS01130 at 283.888 kb on - strand, within HMPREF1078_RS01130 at 283.900 kb on - strand, within HMPREF1078_RS01130 at 283.918 kb on + strand, within HMPREF1078_RS01130 at 283.918 kb on + strand, within HMPREF1078_RS01130 at 283.920 kb on + strand, within HMPREF1078_RS01130 at 283.983 kb on + strand, within HMPREF1078_RS01130 at 283.984 kb on - strand, within HMPREF1078_RS01130 at 283.984 kb on - strand, within HMPREF1078_RS01130 at 284.064 kb on + strand, within HMPREF1078_RS01130 at 284.080 kb on - strand, within HMPREF1078_RS01130 at 284.159 kb on - strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.217 kb on + strand, within HMPREF1078_RS01130 at 284.218 kb on - strand, within HMPREF1078_RS01130 at 284.219 kb on + strand, within HMPREF1078_RS01130 at 284.281 kb on + strand, within HMPREF1078_RS01130 at 284.281 kb on + strand, within HMPREF1078_RS01130 at 284.282 kb on - strand, within HMPREF1078_RS01130 at 284.351 kb on + strand, within HMPREF1078_RS01130
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 281,295 + -0.5 281,295 + +0.9 281,300 + +1.0 281,301 - -1.3 281,311 + -0.3 281,316 - -2.8 281,381 + +0.4 281,381 + +0.7 281,381 + -0.0 281,382 - +0.1 281,398 + -0.8 281,398 + +0.7 281,408 + +1.7 281,441 + -2.2 281,561 + HMPREF1078_RS01120 0.20 -2.6 281,562 - HMPREF1078_RS01120 0.20 -3.0 281,562 - HMPREF1078_RS01120 0.20 -1.1 281,562 - HMPREF1078_RS01120 0.20 -0.2 281,590 + HMPREF1078_RS01120 0.23 -2.7 281,590 + HMPREF1078_RS01120 0.23 -2.2 281,595 - HMPREF1078_RS01120 0.24 -2.8 281,653 + HMPREF1078_RS01120 0.31 -2.1 281,653 + HMPREF1078_RS01120 0.31 -3.9 281,654 - HMPREF1078_RS01120 0.32 -3.3 281,654 - HMPREF1078_RS01120 0.32 -0.7 281,719 - HMPREF1078_RS01120 0.40 -4.3 281,721 - HMPREF1078_RS01120 0.40 -1.5 281,730 + HMPREF1078_RS01120 0.41 +0.3 281,730 + HMPREF1078_RS01120 0.41 -3.3 281,730 + HMPREF1078_RS01120 0.41 -1.6 281,731 - HMPREF1078_RS01120 0.41 -1.7 281,734 + HMPREF1078_RS01120 0.42 -2.9 281,735 - HMPREF1078_RS01120 0.42 -1.6 281,750 + HMPREF1078_RS01120 0.44 -0.2 281,750 + HMPREF1078_RS01120 0.44 -3.9 281,751 - HMPREF1078_RS01120 0.44 -0.2 281,755 - HMPREF1078_RS01120 0.45 -1.5 281,767 + HMPREF1078_RS01120 0.46 -1.3 281,797 - HMPREF1078_RS01120 0.50 -2.1 281,797 - HMPREF1078_RS01120 0.50 -2.2 281,805 + HMPREF1078_RS01120 0.51 -1.8 281,805 + HMPREF1078_RS01120 0.51 -2.1 281,863 - HMPREF1078_RS01120 0.59 -4.3 281,871 - HMPREF1078_RS01120 0.60 -4.3 281,871 - HMPREF1078_RS01120 0.60 -0.9 281,937 + HMPREF1078_RS01120 0.68 -2.2 281,938 - HMPREF1078_RS01120 0.68 -2.6 281,938 - HMPREF1078_RS01120 0.68 -1.6 281,942 + HMPREF1078_RS01120 0.69 -1.2 281,943 - HMPREF1078_RS01120 0.69 -1.0 281,943 - HMPREF1078_RS01120 0.69 -3.0 281,954 + HMPREF1078_RS01120 0.70 -0.7 281,985 + HMPREF1078_RS01120 0.74 -2.3 281,985 + HMPREF1078_RS01120 0.74 -1.7 281,988 - HMPREF1078_RS01120 0.75 -4.6 281,992 + HMPREF1078_RS01120 0.75 -2.4 281,993 - HMPREF1078_RS01120 0.75 -2.6 281,993 - HMPREF1078_RS01120 0.75 -3.2 281,993 - HMPREF1078_RS01120 0.75 -0.6 282,069 - HMPREF1078_RS01120 0.85 -1.0 282,069 - HMPREF1078_RS01120 0.85 -2.8 282,069 - HMPREF1078_RS01120 0.85 -3.9 282,069 - HMPREF1078_RS01120 0.85 -0.0 282,069 - HMPREF1078_RS01120 0.85 -3.5 282,103 + HMPREF1078_RS01120 0.90 -2.4 282,109 + -0.8 282,109 + -1.0 282,126 + -3.3 282,130 + -2.3 282,131 - -1.5 282,169 + -1.0 282,176 - -1.7 282,190 + -1.0 282,190 + -2.5 282,191 - -0.9 282,204 - +0.4 282,204 - +0.7 282,206 + -2.1 282,207 - +0.8 282,207 - -0.4 282,207 - +0.8 282,218 - +1.2 282,220 + +2.3 282,220 - -0.2 282,221 - +0.5 282,240 + -3.0 282,262 + -4.4 282,263 - -2.4 282,265 + -3.5 282,266 - -1.1 282,266 - -3.2 282,281 + -2.6 282,282 - +1.4 282,284 + -2.1 282,284 + -3.4 282,284 + -0.0 282,285 - -0.1 282,285 - -0.8 282,287 + +0.6 282,288 - +0.9 282,392 + -1.9 282,444 + HMPREF1078_RS01125 0.15 -1.5 282,444 + HMPREF1078_RS01125 0.15 -0.1 282,445 - HMPREF1078_RS01125 0.15 -2.3 282,445 - HMPREF1078_RS01125 0.15 -1.5 282,445 - HMPREF1078_RS01125 0.15 -2.1 282,445 - HMPREF1078_RS01125 0.15 -3.1 282,445 - HMPREF1078_RS01125 0.15 -2.5 282,484 - HMPREF1078_RS01125 0.18 -3.7 282,484 - HMPREF1078_RS01125 0.18 -2.4 282,484 - HMPREF1078_RS01125 0.18 -3.4 282,489 + HMPREF1078_RS01125 0.19 +0.4 282,489 + HMPREF1078_RS01125 0.19 +1.4 282,490 - HMPREF1078_RS01125 0.19 -2.6 282,606 - HMPREF1078_RS01125 0.30 -2.0 282,606 - HMPREF1078_RS01125 0.30 -1.7 282,606 - HMPREF1078_RS01125 0.30 -2.1 282,606 - HMPREF1078_RS01125 0.30 -2.1 282,606 - HMPREF1078_RS01125 0.30 +0.7 282,614 - HMPREF1078_RS01125 0.31 -0.9 282,811 - HMPREF1078_RS01125 0.49 -2.6 282,834 - HMPREF1078_RS01125 0.51 -0.6 282,834 - HMPREF1078_RS01125 0.51 -0.7 282,843 + HMPREF1078_RS01125 0.52 -1.8 282,843 + HMPREF1078_RS01125 0.52 -2.4 282,844 - HMPREF1078_RS01125 0.52 +0.2 282,844 - HMPREF1078_RS01125 0.52 -4.0 282,849 - HMPREF1078_RS01125 0.53 -1.9 282,849 - HMPREF1078_RS01125 0.53 -3.5 282,849 - HMPREF1078_RS01125 0.53 -3.9 282,899 + HMPREF1078_RS01125 0.57 -3.0 282,900 - HMPREF1078_RS01125 0.57 -2.8 282,900 - HMPREF1078_RS01125 0.57 +0.6 282,973 + HMPREF1078_RS01125 0.64 -1.7 282,973 + HMPREF1078_RS01125 0.64 -1.6 282,974 - HMPREF1078_RS01125 0.64 -2.5 282,974 - HMPREF1078_RS01125 0.64 -1.9 283,027 - HMPREF1078_RS01125 0.69 -2.0 283,109 + HMPREF1078_RS01125 0.77 -1.1 283,109 + HMPREF1078_RS01125 0.77 -0.8 283,109 + HMPREF1078_RS01125 0.77 +1.0 283,110 - HMPREF1078_RS01125 0.77 -1.6 283,110 - HMPREF1078_RS01125 0.77 -3.9 283,110 - HMPREF1078_RS01125 0.77 -2.4 283,110 - HMPREF1078_RS01125 0.77 -2.8 283,110 - HMPREF1078_RS01125 0.77 -1.9 283,110 - HMPREF1078_RS01125 0.77 -0.6 283,110 - HMPREF1078_RS01125 0.77 -2.3 283,110 - HMPREF1078_RS01125 0.77 -2.2 283,110 - HMPREF1078_RS01125 0.77 -1.6 283,113 + HMPREF1078_RS01125 0.77 -2.8 283,113 + HMPREF1078_RS01125 0.77 -0.5 283,113 + HMPREF1078_RS01125 0.77 -3.7 283,114 - HMPREF1078_RS01125 0.77 -0.7 283,114 - HMPREF1078_RS01125 0.77 -3.5 283,258 + -1.0 283,259 - -0.6 283,281 + +0.9 283,298 - +1.8 283,303 - -3.4 283,318 + -1.0 283,319 - +0.8 283,362 + +0.2 283,363 - -0.9 283,374 + -3.4 283,375 - +0.4 283,380 - -0.2 283,387 - +0.1 283,387 - +1.4 283,389 - -1.8 283,393 + -2.4 283,401 - -0.7 283,413 + -0.8 283,429 + -2.9 283,430 - -1.5 283,430 - +0.5 283,433 + -1.8 283,433 + -2.9 283,434 - -0.6 283,434 - -1.6 283,434 - -0.5 283,441 - -0.2 283,454 + -0.6 283,454 + -4.1 283,466 - -0.0 283,501 - -2.2 283,515 + -2.2 283,516 - -0.8 283,516 - -0.1 283,524 - -3.4 283,561 + -2.3 283,647 + HMPREF1078_RS01130 0.17 -2.5 283,647 + HMPREF1078_RS01130 0.17 -1.1 283,647 + HMPREF1078_RS01130 0.17 -3.9 283,648 - HMPREF1078_RS01130 0.17 -2.3 283,651 + HMPREF1078_RS01130 0.17 -0.5 283,651 + HMPREF1078_RS01130 0.17 -3.6 283,652 - HMPREF1078_RS01130 0.18 -1.6 283,721 + HMPREF1078_RS01130 0.23 -4.4 283,724 - HMPREF1078_RS01130 0.24 +0.1 283,734 + HMPREF1078_RS01130 0.24 -0.6 283,734 + HMPREF1078_RS01130 0.24 -2.3 283,735 - HMPREF1078_RS01130 0.24 -1.2 283,743 - HMPREF1078_RS01130 0.25 -2.7 283,743 - HMPREF1078_RS01130 0.25 +1.2 283,822 + HMPREF1078_RS01130 0.32 -2.9 283,841 - HMPREF1078_RS01130 0.33 -1.0 283,872 + HMPREF1078_RS01130 0.36 -3.0 283,887 + HMPREF1078_RS01130 0.37 -0.8 283,888 - HMPREF1078_RS01130 0.37 -1.0 283,900 - HMPREF1078_RS01130 0.38 -2.2 283,918 + HMPREF1078_RS01130 0.40 -0.9 283,918 + HMPREF1078_RS01130 0.40 -0.4 283,920 + HMPREF1078_RS01130 0.40 -3.3 283,983 + HMPREF1078_RS01130 0.45 -2.4 283,984 - HMPREF1078_RS01130 0.45 -0.6 283,984 - HMPREF1078_RS01130 0.45 +0.1 284,064 + HMPREF1078_RS01130 0.52 -0.0 284,080 - HMPREF1078_RS01130 0.54 -2.0 284,159 - HMPREF1078_RS01130 0.60 -2.3 284,217 + HMPREF1078_RS01130 0.65 -0.7 284,217 + HMPREF1078_RS01130 0.65 -0.4 284,217 + HMPREF1078_RS01130 0.65 +0.2 284,218 - HMPREF1078_RS01130 0.65 -1.0 284,219 + HMPREF1078_RS01130 0.65 -3.1 284,281 + HMPREF1078_RS01130 0.70 -2.3 284,281 + HMPREF1078_RS01130 0.70 +0.4 284,282 - HMPREF1078_RS01130 0.71 -0.7 284,351 + HMPREF1078_RS01130 0.76 -3.0
Or see this region's nucleotide sequence