Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01095 and HMPREF1078_RS01100 are separated by 299 nucleotides HMPREF1078_RS01100 and HMPREF1078_RS01105 are separated by 20 nucleotides HMPREF1078_RS01105 and HMPREF1078_RS01110 are separated by 114 nucleotides
HMPREF1078_RS01095: HMPREF1078_RS01095 - hypothetical protein, at 275,628 to 276,422
_RS01095
HMPREF1078_RS01100: HMPREF1078_RS01100 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 276,722 to 277,897
_RS01100
HMPREF1078_RS01105: HMPREF1078_RS01105 - NUDIX domain-containing protein, at 277,918 to 278,409
_RS01105
HMPREF1078_RS01110: HMPREF1078_RS01110 - DNA topoisomerase 3, at 278,524 to 280,602
_RS01110
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 275.727 kb on + strand, within HMPREF1078_RS01095 at 275.727 kb on + strand, within HMPREF1078_RS01095 at 275.728 kb on - strand, within HMPREF1078_RS01095 at 275.728 kb on - strand, within HMPREF1078_RS01095 at 275.823 kb on - strand, within HMPREF1078_RS01095 at 275.823 kb on - strand, within HMPREF1078_RS01095 at 275.834 kb on + strand, within HMPREF1078_RS01095 at 275.889 kb on + strand, within HMPREF1078_RS01095 at 275.890 kb on - strand, within HMPREF1078_RS01095 at 275.992 kb on - strand, within HMPREF1078_RS01095 at 275.993 kb on + strand, within HMPREF1078_RS01095 at 276.030 kb on + strand, within HMPREF1078_RS01095 at 276.031 kb on - strand, within HMPREF1078_RS01095 at 276.032 kb on + strand, within HMPREF1078_RS01095 at 276.033 kb on - strand, within HMPREF1078_RS01095 at 276.082 kb on - strand, within HMPREF1078_RS01095 at 276.250 kb on + strand, within HMPREF1078_RS01095 at 276.257 kb on + strand, within HMPREF1078_RS01095 at 276.270 kb on + strand, within HMPREF1078_RS01095 at 276.340 kb on + strand, within HMPREF1078_RS01095 at 276.340 kb on + strand, within HMPREF1078_RS01095 at 276.341 kb on - strand, within HMPREF1078_RS01095 at 276.348 kb on - strand at 276.377 kb on - strand at 276.460 kb on + strand at 276.460 kb on + strand at 276.461 kb on - strand at 276.503 kb on - strand at 276.544 kb on + strand at 276.553 kb on + strand at 276.574 kb on - strand at 276.587 kb on + strand at 276.587 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.593 kb on + strand at 276.594 kb on - strand at 276.594 kb on - strand at 276.594 kb on - strand at 276.595 kb on + strand at 276.628 kb on + strand at 276.740 kb on + strand at 276.740 kb on + strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.741 kb on - strand at 276.828 kb on + strand at 276.828 kb on + strand at 276.828 kb on + strand at 276.829 kb on - strand at 276.834 kb on - strand at 276.908 kb on - strand, within HMPREF1078_RS01100 at 277.101 kb on - strand, within HMPREF1078_RS01100 at 277.101 kb on - strand, within HMPREF1078_RS01100 at 277.138 kb on + strand, within HMPREF1078_RS01100 at 277.147 kb on + strand, within HMPREF1078_RS01100 at 277.197 kb on + strand, within HMPREF1078_RS01100 at 277.222 kb on - strand, within HMPREF1078_RS01100 at 277.363 kb on - strand, within HMPREF1078_RS01100 at 277.376 kb on - strand, within HMPREF1078_RS01100 at 277.413 kb on + strand, within HMPREF1078_RS01100 at 277.415 kb on - strand, within HMPREF1078_RS01100 at 277.417 kb on - strand, within HMPREF1078_RS01100 at 277.462 kb on + strand, within HMPREF1078_RS01100 at 277.529 kb on + strand, within HMPREF1078_RS01100 at 277.529 kb on + strand, within HMPREF1078_RS01100 at 277.568 kb on - strand, within HMPREF1078_RS01100 at 277.636 kb on - strand, within HMPREF1078_RS01100 at 277.652 kb on - strand, within HMPREF1078_RS01100 at 277.652 kb on - strand, within HMPREF1078_RS01100 at 277.666 kb on + strand, within HMPREF1078_RS01100 at 277.671 kb on - strand, within HMPREF1078_RS01100 at 277.691 kb on + strand, within HMPREF1078_RS01100 at 277.692 kb on - strand, within HMPREF1078_RS01100 at 277.692 kb on - strand, within HMPREF1078_RS01100 at 277.745 kb on + strand, within HMPREF1078_RS01100 at 277.746 kb on - strand, within HMPREF1078_RS01100 at 277.748 kb on + strand, within HMPREF1078_RS01100 at 277.783 kb on + strand at 277.783 kb on + strand at 277.783 kb on + strand at 277.811 kb on + strand at 277.812 kb on - strand at 277.873 kb on - strand at 277.919 kb on + strand at 277.938 kb on - strand at 278.061 kb on + strand, within HMPREF1078_RS01105 at 278.066 kb on + strand, within HMPREF1078_RS01105 at 278.067 kb on - strand, within HMPREF1078_RS01105 at 278.078 kb on - strand, within HMPREF1078_RS01105 at 278.078 kb on - strand, within HMPREF1078_RS01105 at 278.108 kb on + strand, within HMPREF1078_RS01105 at 278.108 kb on + strand, within HMPREF1078_RS01105 at 278.158 kb on + strand, within HMPREF1078_RS01105 at 278.221 kb on - strand, within HMPREF1078_RS01105 at 278.242 kb on - strand, within HMPREF1078_RS01105 at 278.271 kb on - strand, within HMPREF1078_RS01105 at 278.271 kb on - strand, within HMPREF1078_RS01105 at 278.290 kb on + strand, within HMPREF1078_RS01105 at 278.318 kb on - strand, within HMPREF1078_RS01105 at 278.417 kb on - strand at 278.422 kb on - strand at 278.425 kb on + strand at 278.425 kb on + strand at 278.425 kb on + strand at 278.426 kb on - strand at 278.457 kb on + strand at 278.557 kb on + strand at 278.586 kb on - strand at 278.611 kb on - strand at 278.611 kb on - strand at 278.623 kb on - strand at 278.625 kb on - strand at 278.665 kb on - strand at 278.673 kb on + strand at 278.674 kb on - strand at 278.860 kb on + strand, within HMPREF1078_RS01110 at 278.881 kb on - strand, within HMPREF1078_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 275,727 + HMPREF1078_RS01095 0.12 -0.0 275,727 + HMPREF1078_RS01095 0.12 +0.4 275,728 - HMPREF1078_RS01095 0.13 -2.1 275,728 - HMPREF1078_RS01095 0.13 +1.0 275,823 - HMPREF1078_RS01095 0.25 +0.1 275,823 - HMPREF1078_RS01095 0.25 +0.9 275,834 + HMPREF1078_RS01095 0.26 +1.0 275,889 + HMPREF1078_RS01095 0.33 +0.1 275,890 - HMPREF1078_RS01095 0.33 +1.6 275,992 - HMPREF1078_RS01095 0.46 +1.3 275,993 + HMPREF1078_RS01095 0.46 -1.4 276,030 + HMPREF1078_RS01095 0.51 -0.5 276,031 - HMPREF1078_RS01095 0.51 +0.4 276,032 + HMPREF1078_RS01095 0.51 -0.0 276,033 - HMPREF1078_RS01095 0.51 -1.0 276,082 - HMPREF1078_RS01095 0.57 +0.1 276,250 + HMPREF1078_RS01095 0.78 -0.6 276,257 + HMPREF1078_RS01095 0.79 -1.6 276,270 + HMPREF1078_RS01095 0.81 -1.9 276,340 + HMPREF1078_RS01095 0.90 -1.6 276,340 + HMPREF1078_RS01095 0.90 +0.3 276,341 - HMPREF1078_RS01095 0.90 -1.2 276,348 - +0.5 276,377 - -0.6 276,460 + -1.1 276,460 + -0.0 276,461 - -0.2 276,503 - -0.1 276,544 + -1.0 276,553 + +0.5 276,574 - -1.5 276,587 + -0.3 276,587 + +1.2 276,593 + +0.4 276,593 + -1.8 276,593 + -0.4 276,593 + -1.9 276,593 + +0.2 276,594 - -0.9 276,594 - -1.3 276,594 - -0.2 276,595 + -1.7 276,628 + -0.7 276,740 + -0.2 276,740 + -0.9 276,741 - +0.6 276,741 - +0.9 276,741 - +0.3 276,741 - +0.7 276,741 - -1.5 276,828 + +0.6 276,828 + -0.9 276,828 + -0.0 276,829 - +1.5 276,834 - -0.9 276,908 - HMPREF1078_RS01100 0.16 +1.1 277,101 - HMPREF1078_RS01100 0.32 -0.1 277,101 - HMPREF1078_RS01100 0.32 -0.4 277,138 + HMPREF1078_RS01100 0.35 +3.0 277,147 + HMPREF1078_RS01100 0.36 -1.7 277,197 + HMPREF1078_RS01100 0.40 -1.4 277,222 - HMPREF1078_RS01100 0.43 -0.9 277,363 - HMPREF1078_RS01100 0.55 +0.1 277,376 - HMPREF1078_RS01100 0.56 -1.2 277,413 + HMPREF1078_RS01100 0.59 +1.4 277,415 - HMPREF1078_RS01100 0.59 -0.1 277,417 - HMPREF1078_RS01100 0.59 +0.0 277,462 + HMPREF1078_RS01100 0.63 +1.5 277,529 + HMPREF1078_RS01100 0.69 +0.4 277,529 + HMPREF1078_RS01100 0.69 -1.4 277,568 - HMPREF1078_RS01100 0.72 +0.1 277,636 - HMPREF1078_RS01100 0.78 +1.5 277,652 - HMPREF1078_RS01100 0.79 +0.1 277,652 - HMPREF1078_RS01100 0.79 -1.7 277,666 + HMPREF1078_RS01100 0.80 -1.0 277,671 - HMPREF1078_RS01100 0.81 -0.6 277,691 + HMPREF1078_RS01100 0.82 -0.8 277,692 - HMPREF1078_RS01100 0.82 +1.3 277,692 - HMPREF1078_RS01100 0.82 -1.2 277,745 + HMPREF1078_RS01100 0.87 +1.1 277,746 - HMPREF1078_RS01100 0.87 -2.9 277,748 + HMPREF1078_RS01100 0.87 +0.6 277,783 + -0.4 277,783 + -1.5 277,783 + -0.6 277,811 + -0.9 277,812 - -2.5 277,873 - -1.5 277,919 + +0.0 277,938 - -1.5 278,061 + HMPREF1078_RS01105 0.29 -0.6 278,066 + HMPREF1078_RS01105 0.30 -2.0 278,067 - HMPREF1078_RS01105 0.30 +0.9 278,078 - HMPREF1078_RS01105 0.33 +0.2 278,078 - HMPREF1078_RS01105 0.33 +0.6 278,108 + HMPREF1078_RS01105 0.39 +2.8 278,108 + HMPREF1078_RS01105 0.39 +1.8 278,158 + HMPREF1078_RS01105 0.49 +0.5 278,221 - HMPREF1078_RS01105 0.62 +0.1 278,242 - HMPREF1078_RS01105 0.66 -2.1 278,271 - HMPREF1078_RS01105 0.72 -0.2 278,271 - HMPREF1078_RS01105 0.72 +0.6 278,290 + HMPREF1078_RS01105 0.76 +2.1 278,318 - HMPREF1078_RS01105 0.81 +1.6 278,417 - -0.4 278,422 - -0.5 278,425 + -0.8 278,425 + +1.1 278,425 + +1.1 278,426 - -0.4 278,457 + +0.7 278,557 + -0.4 278,586 - -0.0 278,611 - +0.8 278,611 - -0.3 278,623 - -0.4 278,625 - -0.9 278,665 - -0.0 278,673 + -0.9 278,674 - -0.5 278,860 + HMPREF1078_RS01110 0.16 -0.4 278,881 - HMPREF1078_RS01110 0.17 -0.5
Or see this region's nucleotide sequence