Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00900 and HMPREF1078_RS00905 overlap by 4 nucleotides HMPREF1078_RS00905 and HMPREF1078_RS00910 are separated by 169 nucleotides
HMPREF1078_RS00900: HMPREF1078_RS00900 - efflux RND transporter permease subunit, at 217,495 to 220,611
_RS00900
HMPREF1078_RS00905: HMPREF1078_RS00905 - TolC family protein, at 220,608 to 221,789
_RS00905
HMPREF1078_RS00910: HMPREF1078_RS00910 - GH92 family glycosyl hydrolase, at 221,959 to 224,268
_RS00910
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 219.617 kb on + strand, within HMPREF1078_RS00900 at 219.617 kb on + strand, within HMPREF1078_RS00900 at 219.618 kb on - strand, within HMPREF1078_RS00900 at 219.712 kb on + strand, within HMPREF1078_RS00900 at 219.742 kb on + strand, within HMPREF1078_RS00900 at 219.742 kb on + strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.901 kb on + strand, within HMPREF1078_RS00900 at 219.963 kb on + strand, within HMPREF1078_RS00900 at 219.981 kb on + strand, within HMPREF1078_RS00900 at 219.982 kb on - strand, within HMPREF1078_RS00900 at 220.023 kb on - strand, within HMPREF1078_RS00900 at 220.023 kb on - strand, within HMPREF1078_RS00900 at 220.034 kb on + strand, within HMPREF1078_RS00900 at 220.035 kb on - strand, within HMPREF1078_RS00900 at 220.063 kb on + strand, within HMPREF1078_RS00900 at 220.064 kb on - strand, within HMPREF1078_RS00900 at 220.125 kb on + strand, within HMPREF1078_RS00900 at 220.165 kb on + strand, within HMPREF1078_RS00900 at 220.202 kb on + strand, within HMPREF1078_RS00900 at 220.373 kb on + strand at 220.373 kb on + strand at 220.374 kb on - strand at 220.374 kb on - strand at 220.422 kb on + strand at 220.500 kb on - strand at 220.527 kb on - strand at 220.583 kb on + strand at 220.586 kb on + strand at 220.621 kb on + strand at 220.630 kb on + strand at 220.794 kb on - strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.809 kb on + strand, within HMPREF1078_RS00905 at 220.810 kb on - strand, within HMPREF1078_RS00905 at 220.879 kb on + strand, within HMPREF1078_RS00905 at 220.879 kb on + strand, within HMPREF1078_RS00905 at 220.882 kb on - strand, within HMPREF1078_RS00905 at 220.883 kb on + strand, within HMPREF1078_RS00905 at 220.883 kb on + strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.923 kb on + strand, within HMPREF1078_RS00905 at 221.061 kb on + strand, within HMPREF1078_RS00905 at 221.062 kb on - strand, within HMPREF1078_RS00905 at 221.146 kb on + strand, within HMPREF1078_RS00905 at 221.213 kb on + strand, within HMPREF1078_RS00905 at 221.236 kb on - strand, within HMPREF1078_RS00905 at 221.729 kb on + strand at 221.730 kb on - strand at 221.773 kb on - strand at 221.787 kb on + strand at 221.810 kb on - strand at 221.844 kb on + strand at 221.845 kb on - strand at 221.845 kb on - strand at 221.845 kb on - strand at 221.905 kb on + strand at 221.906 kb on - strand at 221.923 kb on - strand at 221.923 kb on - strand at 221.939 kb on + strand at 221.940 kb on - strand at 221.948 kb on + strand at 221.949 kb on - strand at 221.949 kb on - strand at 221.950 kb on + strand at 221.950 kb on + strand at 221.950 kb on + strand at 221.973 kb on + strand at 221.975 kb on + strand at 221.976 kb on - strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.992 kb on - strand at 221.992 kb on - strand at 221.997 kb on + strand at 221.997 kb on + strand at 221.998 kb on - strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.099 kb on - strand at 222.116 kb on - strand at 222.125 kb on + strand at 222.125 kb on + strand at 222.125 kb on + strand at 222.126 kb on - strand at 222.126 kb on - strand at 222.126 kb on - strand at 222.191 kb on - strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.193 kb on - strand, within HMPREF1078_RS00910 at 222.193 kb on - strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.213 kb on - strand, within HMPREF1078_RS00910 at 222.213 kb on - strand, within HMPREF1078_RS00910 at 222.336 kb on + strand, within HMPREF1078_RS00910 at 222.336 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.359 kb on - strand, within HMPREF1078_RS00910 at 222.359 kb on - strand, within HMPREF1078_RS00910 at 222.361 kb on + strand, within HMPREF1078_RS00910 at 222.361 kb on + strand, within HMPREF1078_RS00910 at 222.362 kb on - strand, within HMPREF1078_RS00910 at 222.362 kb on - strand, within HMPREF1078_RS00910 at 222.364 kb on + strand, within HMPREF1078_RS00910 at 222.374 kb on - strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.464 kb on - strand, within HMPREF1078_RS00910 at 222.464 kb on - strand, within HMPREF1078_RS00910 at 222.470 kb on + strand, within HMPREF1078_RS00910 at 222.470 kb on + strand, within HMPREF1078_RS00910 at 222.496 kb on + strand, within HMPREF1078_RS00910 at 222.497 kb on - strand, within HMPREF1078_RS00910 at 222.535 kb on + strand, within HMPREF1078_RS00910 at 222.535 kb on + strand, within HMPREF1078_RS00910 at 222.537 kb on + strand, within HMPREF1078_RS00910 at 222.537 kb on + strand, within HMPREF1078_RS00910 at 222.560 kb on + strand, within HMPREF1078_RS00910 at 222.580 kb on + strand, within HMPREF1078_RS00910 at 222.613 kb on + strand, within HMPREF1078_RS00910 at 222.613 kb on + strand, within HMPREF1078_RS00910 at 222.697 kb on - strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 219,617 + HMPREF1078_RS00900 0.68 -2.3 219,617 + HMPREF1078_RS00900 0.68 -0.0 219,618 - HMPREF1078_RS00900 0.68 +1.1 219,712 + HMPREF1078_RS00900 0.71 -1.1 219,742 + HMPREF1078_RS00900 0.72 -0.0 219,742 + HMPREF1078_RS00900 0.72 -1.3 219,743 - HMPREF1078_RS00900 0.72 +1.9 219,743 - HMPREF1078_RS00900 0.72 -0.9 219,743 - HMPREF1078_RS00900 0.72 -0.8 219,901 + HMPREF1078_RS00900 0.77 +0.9 219,963 + HMPREF1078_RS00900 0.79 +0.4 219,981 + HMPREF1078_RS00900 0.80 +3.1 219,982 - HMPREF1078_RS00900 0.80 -1.4 220,023 - HMPREF1078_RS00900 0.81 +0.3 220,023 - HMPREF1078_RS00900 0.81 -2.7 220,034 + HMPREF1078_RS00900 0.81 +1.5 220,035 - HMPREF1078_RS00900 0.81 +0.5 220,063 + HMPREF1078_RS00900 0.82 -1.5 220,064 - HMPREF1078_RS00900 0.82 +1.2 220,125 + HMPREF1078_RS00900 0.84 -1.0 220,165 + HMPREF1078_RS00900 0.86 +0.8 220,202 + HMPREF1078_RS00900 0.87 +0.5 220,373 + +1.0 220,373 + -1.9 220,374 - +0.5 220,374 - +1.0 220,422 + -1.7 220,500 - -1.1 220,527 - +0.8 220,583 + +0.9 220,586 + -1.0 220,621 + +1.6 220,630 + -0.3 220,794 - HMPREF1078_RS00905 0.16 -0.8 220,797 + HMPREF1078_RS00905 0.16 +0.2 220,797 + HMPREF1078_RS00905 0.16 -0.5 220,797 + HMPREF1078_RS00905 0.16 -0.2 220,797 + HMPREF1078_RS00905 0.16 +0.1 220,809 + HMPREF1078_RS00905 0.17 +0.4 220,810 - HMPREF1078_RS00905 0.17 +2.6 220,879 + HMPREF1078_RS00905 0.23 +1.5 220,879 + HMPREF1078_RS00905 0.23 +2.1 220,882 - HMPREF1078_RS00905 0.23 +0.6 220,883 + HMPREF1078_RS00905 0.23 +0.9 220,883 + HMPREF1078_RS00905 0.23 +0.3 220,884 - HMPREF1078_RS00905 0.23 +0.3 220,884 - HMPREF1078_RS00905 0.23 -0.5 220,884 - HMPREF1078_RS00905 0.23 +0.3 220,884 - HMPREF1078_RS00905 0.23 +1.2 220,923 + HMPREF1078_RS00905 0.27 -0.0 221,061 + HMPREF1078_RS00905 0.38 +0.6 221,062 - HMPREF1078_RS00905 0.38 -2.5 221,146 + HMPREF1078_RS00905 0.46 +0.5 221,213 + HMPREF1078_RS00905 0.51 +0.7 221,236 - HMPREF1078_RS00905 0.53 +0.8 221,729 + +1.2 221,730 - -1.5 221,773 - +1.6 221,787 + -2.9 221,810 - +0.6 221,844 + -2.2 221,845 - +0.4 221,845 - +0.1 221,845 - -0.2 221,905 + -2.3 221,906 - +0.9 221,923 - -0.9 221,923 - -0.0 221,939 + +0.5 221,940 - +1.0 221,948 + -0.6 221,949 - -0.0 221,949 - +1.0 221,950 + -0.2 221,950 + +0.7 221,950 + -2.1 221,973 + -0.7 221,975 + +0.8 221,976 - +0.7 221,991 + -1.0 221,991 + -0.2 221,991 + +0.5 221,991 + -0.6 221,991 + +0.1 221,991 + +1.0 221,992 - +0.9 221,992 - -3.1 221,997 + -1.0 221,997 + -0.0 221,998 - -1.6 222,098 + -0.1 222,098 + +0.0 222,098 + -1.7 222,098 + -0.7 222,099 - -0.3 222,116 - +1.1 222,125 + +0.5 222,125 + -0.1 222,125 + +0.8 222,126 - +1.9 222,126 - -1.1 222,126 - +0.8 222,191 - HMPREF1078_RS00910 0.10 -1.9 222,192 + HMPREF1078_RS00910 0.10 +0.4 222,192 + HMPREF1078_RS00910 0.10 -0.6 222,192 + HMPREF1078_RS00910 0.10 -0.3 222,192 + HMPREF1078_RS00910 0.10 -0.9 222,192 + HMPREF1078_RS00910 0.10 -0.9 222,192 + HMPREF1078_RS00910 0.10 -0.6 222,192 + HMPREF1078_RS00910 0.10 +0.2 222,192 + HMPREF1078_RS00910 0.10 +0.8 222,192 + HMPREF1078_RS00910 0.10 +0.5 222,192 + HMPREF1078_RS00910 0.10 -1.6 222,193 - HMPREF1078_RS00910 0.10 -0.1 222,193 - HMPREF1078_RS00910 0.10 +0.5 222,196 + HMPREF1078_RS00910 0.10 -0.3 222,196 + HMPREF1078_RS00910 0.10 -0.6 222,196 + HMPREF1078_RS00910 0.10 +0.1 222,197 - HMPREF1078_RS00910 0.10 +2.5 222,197 - HMPREF1078_RS00910 0.10 -1.2 222,197 - HMPREF1078_RS00910 0.10 +0.2 222,197 - HMPREF1078_RS00910 0.10 +0.4 222,197 - HMPREF1078_RS00910 0.10 -1.8 222,212 + HMPREF1078_RS00910 0.11 +0.7 222,212 + HMPREF1078_RS00910 0.11 -0.8 222,212 + HMPREF1078_RS00910 0.11 -1.1 222,213 - HMPREF1078_RS00910 0.11 -1.0 222,213 - HMPREF1078_RS00910 0.11 +0.1 222,336 + HMPREF1078_RS00910 0.16 +1.4 222,336 + HMPREF1078_RS00910 0.16 +0.1 222,358 + HMPREF1078_RS00910 0.17 +0.9 222,358 + HMPREF1078_RS00910 0.17 -0.4 222,358 + HMPREF1078_RS00910 0.17 -2.5 222,359 - HMPREF1078_RS00910 0.17 -0.8 222,359 - HMPREF1078_RS00910 0.17 -1.3 222,361 + HMPREF1078_RS00910 0.17 -1.0 222,361 + HMPREF1078_RS00910 0.17 +1.2 222,362 - HMPREF1078_RS00910 0.17 +0.4 222,362 - HMPREF1078_RS00910 0.17 -0.8 222,364 + HMPREF1078_RS00910 0.18 +0.7 222,374 - HMPREF1078_RS00910 0.18 +0.8 222,463 + HMPREF1078_RS00910 0.22 +0.4 222,463 + HMPREF1078_RS00910 0.22 +0.5 222,463 + HMPREF1078_RS00910 0.22 -1.0 222,463 + HMPREF1078_RS00910 0.22 -0.2 222,463 + HMPREF1078_RS00910 0.22 -0.9 222,463 + HMPREF1078_RS00910 0.22 +0.1 222,464 - HMPREF1078_RS00910 0.22 -0.5 222,464 - HMPREF1078_RS00910 0.22 +0.2 222,470 + HMPREF1078_RS00910 0.22 -1.0 222,470 + HMPREF1078_RS00910 0.22 +1.2 222,496 + HMPREF1078_RS00910 0.23 -0.0 222,497 - HMPREF1078_RS00910 0.23 +0.5 222,535 + HMPREF1078_RS00910 0.25 -0.2 222,535 + HMPREF1078_RS00910 0.25 -0.8 222,537 + HMPREF1078_RS00910 0.25 -0.9 222,537 + HMPREF1078_RS00910 0.25 -1.7 222,560 + HMPREF1078_RS00910 0.26 +0.9 222,580 + HMPREF1078_RS00910 0.27 -0.0 222,613 + HMPREF1078_RS00910 0.28 -1.4 222,613 + HMPREF1078_RS00910 0.28 +0.8 222,697 - HMPREF1078_RS00910 0.32 -0.3 222,719 + HMPREF1078_RS00910 0.33 +0.5 222,719 + HMPREF1078_RS00910 0.33 +0.1 222,719 + HMPREF1078_RS00910 0.33 +1.7 222,719 + HMPREF1078_RS00910 0.33 +0.6 222,719 + HMPREF1078_RS00910 0.33 +0.5 222,720 - HMPREF1078_RS00910 0.33 +0.1 222,720 - HMPREF1078_RS00910 0.33 +0.1 222,720 - HMPREF1078_RS00910 0.33 -2.6
Or see this region's nucleotide sequence