Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00790 and HMPREF1078_RS00795 are separated by 214 nucleotides HMPREF1078_RS00795 and HMPREF1078_RS00800 are separated by 762 nucleotides
HMPREF1078_RS00790: HMPREF1078_RS00790 - outer membrane protein transport protein, at 187,421 to 189,094
_RS00790
HMPREF1078_RS00795: HMPREF1078_RS00795 - sigma-70 family RNA polymerase sigma factor, at 189,309 to 189,902
_RS00795
HMPREF1078_RS00800: HMPREF1078_RS00800 - ribulose-phosphate 3-epimerase, at 190,665 to 191,315
_RS00800
Position (kb) 189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.329 kb on - strand, within HMPREF1078_RS00790 at 188.371 kb on + strand, within HMPREF1078_RS00790 at 188.372 kb on - strand, within HMPREF1078_RS00790 at 188.372 kb on - strand, within HMPREF1078_RS00790 at 188.387 kb on + strand, within HMPREF1078_RS00790 at 188.387 kb on + strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.390 kb on - strand, within HMPREF1078_RS00790 at 188.390 kb on - strand, within HMPREF1078_RS00790 at 188.402 kb on + strand, within HMPREF1078_RS00790 at 188.402 kb on + strand, within HMPREF1078_RS00790 at 188.403 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.426 kb on + strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.612 kb on - strand, within HMPREF1078_RS00790 at 188.612 kb on - strand, within HMPREF1078_RS00790 at 188.625 kb on + strand, within HMPREF1078_RS00790 at 188.626 kb on - strand, within HMPREF1078_RS00790 at 188.626 kb on - strand, within HMPREF1078_RS00790 at 188.678 kb on + strand, within HMPREF1078_RS00790 at 188.679 kb on - strand, within HMPREF1078_RS00790 at 188.737 kb on + strand, within HMPREF1078_RS00790 at 188.738 kb on - strand, within HMPREF1078_RS00790 at 188.738 kb on - strand, within HMPREF1078_RS00790 at 188.754 kb on + strand, within HMPREF1078_RS00790 at 188.755 kb on - strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.845 kb on - strand, within HMPREF1078_RS00790 at 188.851 kb on + strand, within HMPREF1078_RS00790 at 188.852 kb on - strand, within HMPREF1078_RS00790 at 188.870 kb on + strand, within HMPREF1078_RS00790 at 188.870 kb on + strand, within HMPREF1078_RS00790 at 188.871 kb on - strand, within HMPREF1078_RS00790 at 188.871 kb on - strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.873 kb on - strand, within HMPREF1078_RS00790 at 188.873 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.894 kb on + strand, within HMPREF1078_RS00790 at 188.894 kb on + strand, within HMPREF1078_RS00790 at 188.895 kb on - strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.899 kb on + strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.930 kb on - strand at 188.930 kb on - strand at 188.935 kb on - strand at 188.957 kb on + strand at 188.995 kb on + strand at 188.996 kb on - strand at 188.999 kb on + strand at 188.999 kb on + strand at 189.024 kb on + strand at 189.025 kb on - strand at 189.073 kb on + strand at 189.073 kb on + strand at 189.073 kb on + strand at 189.074 kb on - strand at 189.074 kb on - strand at 189.074 kb on - strand at 189.078 kb on + strand at 189.085 kb on + strand at 189.085 kb on + strand at 189.085 kb on + strand at 189.112 kb on + strand at 189.129 kb on + strand at 189.129 kb on + strand at 189.134 kb on - strand at 189.160 kb on - strand at 189.187 kb on - strand at 189.190 kb on + strand at 189.224 kb on + strand at 189.231 kb on + strand at 189.234 kb on + strand at 189.234 kb on + strand at 189.250 kb on + strand at 189.254 kb on + strand at 189.264 kb on + strand at 189.264 kb on + strand at 189.264 kb on + strand at 189.266 kb on + strand at 189.266 kb on + strand at 189.271 kb on + strand at 189.278 kb on + strand at 189.307 kb on + strand at 189.354 kb on + strand at 189.368 kb on + strand at 189.368 kb on + strand at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.407 kb on + strand, within HMPREF1078_RS00795 at 189.407 kb on + strand, within HMPREF1078_RS00795 at 189.412 kb on + strand, within HMPREF1078_RS00795 at 189.412 kb on + strand, within HMPREF1078_RS00795 at 189.420 kb on + strand, within HMPREF1078_RS00795 at 189.426 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.433 kb on + strand, within HMPREF1078_RS00795 at 189.461 kb on + strand, within HMPREF1078_RS00795 at 189.461 kb on + strand, within HMPREF1078_RS00795 at 189.491 kb on + strand, within HMPREF1078_RS00795 at 189.634 kb on + strand, within HMPREF1078_RS00795 at 189.634 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.644 kb on + strand, within HMPREF1078_RS00795 at 189.674 kb on + strand, within HMPREF1078_RS00795 at 189.682 kb on + strand, within HMPREF1078_RS00795 at 189.762 kb on + strand, within HMPREF1078_RS00795 at 189.765 kb on + strand, within HMPREF1078_RS00795 at 189.765 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.808 kb on + strand, within HMPREF1078_RS00795 at 189.818 kb on + strand, within HMPREF1078_RS00795 at 189.819 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.904 kb on - strand at 190.128 kb on - strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.316 kb on + strand at 190.317 kb on - strand at 190.337 kb on - strand at 190.337 kb on - strand at 190.337 kb on - strand at 190.348 kb on - strand at 190.401 kb on + strand at 190.402 kb on - strand at 190.402 kb on - strand at 190.414 kb on + strand at 190.428 kb on + strand at 190.431 kb on + strand at 190.483 kb on + strand at 190.483 kb on + strand at 190.483 kb on + strand at 190.602 kb on + strand at 190.626 kb on + strand at 190.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 188,329 - HMPREF1078_RS00790 0.54 -1.0 188,371 + HMPREF1078_RS00790 0.57 -1.6 188,372 - HMPREF1078_RS00790 0.57 -1.1 188,372 - HMPREF1078_RS00790 0.57 -1.2 188,387 + HMPREF1078_RS00790 0.58 +0.0 188,387 + HMPREF1078_RS00790 0.58 -0.2 188,388 - HMPREF1078_RS00790 0.58 +0.7 188,388 - HMPREF1078_RS00790 0.58 -1.3 188,388 - HMPREF1078_RS00790 0.58 -0.4 188,390 - HMPREF1078_RS00790 0.58 -0.2 188,390 - HMPREF1078_RS00790 0.58 -0.7 188,402 + HMPREF1078_RS00790 0.59 -1.3 188,402 + HMPREF1078_RS00790 0.59 -0.1 188,403 - HMPREF1078_RS00790 0.59 -1.3 188,406 - HMPREF1078_RS00790 0.59 +3.0 188,406 - HMPREF1078_RS00790 0.59 +0.6 188,406 - HMPREF1078_RS00790 0.59 -1.8 188,426 + HMPREF1078_RS00790 0.60 -3.7 188,610 - HMPREF1078_RS00790 0.71 +0.5 188,610 - HMPREF1078_RS00790 0.71 -0.0 188,610 - HMPREF1078_RS00790 0.71 +1.8 188,611 + HMPREF1078_RS00790 0.71 +1.0 188,611 + HMPREF1078_RS00790 0.71 -0.7 188,611 + HMPREF1078_RS00790 0.71 -0.2 188,611 + HMPREF1078_RS00790 0.71 -2.0 188,612 - HMPREF1078_RS00790 0.71 -1.6 188,612 - HMPREF1078_RS00790 0.71 -1.8 188,625 + HMPREF1078_RS00790 0.72 -2.1 188,626 - HMPREF1078_RS00790 0.72 -0.3 188,626 - HMPREF1078_RS00790 0.72 +0.9 188,678 + HMPREF1078_RS00790 0.75 +0.2 188,679 - HMPREF1078_RS00790 0.75 -1.6 188,737 + HMPREF1078_RS00790 0.79 +0.5 188,738 - HMPREF1078_RS00790 0.79 +0.4 188,738 - HMPREF1078_RS00790 0.79 -1.3 188,754 + HMPREF1078_RS00790 0.80 -0.9 188,755 - HMPREF1078_RS00790 0.80 -1.6 188,804 + HMPREF1078_RS00790 0.83 +0.6 188,804 + HMPREF1078_RS00790 0.83 -1.5 188,804 + HMPREF1078_RS00790 0.83 -0.6 188,805 - HMPREF1078_RS00790 0.83 -0.5 188,805 - HMPREF1078_RS00790 0.83 -0.6 188,805 - HMPREF1078_RS00790 0.83 -0.3 188,845 - HMPREF1078_RS00790 0.85 -1.0 188,851 + HMPREF1078_RS00790 0.85 +0.1 188,852 - HMPREF1078_RS00790 0.85 -2.3 188,870 + HMPREF1078_RS00790 0.87 -1.6 188,870 + HMPREF1078_RS00790 0.87 +0.6 188,871 - HMPREF1078_RS00790 0.87 -1.0 188,871 - HMPREF1078_RS00790 0.87 -1.3 188,872 + HMPREF1078_RS00790 0.87 -1.0 188,872 + HMPREF1078_RS00790 0.87 -1.7 188,872 + HMPREF1078_RS00790 0.87 -0.9 188,872 + HMPREF1078_RS00790 0.87 -1.0 188,873 - HMPREF1078_RS00790 0.87 -0.7 188,873 - HMPREF1078_RS00790 0.87 -1.5 188,885 - HMPREF1078_RS00790 0.87 -1.8 188,885 - HMPREF1078_RS00790 0.87 +0.3 188,885 - HMPREF1078_RS00790 0.87 -1.5 188,894 + HMPREF1078_RS00790 0.88 -1.3 188,894 + HMPREF1078_RS00790 0.88 -0.8 188,895 - HMPREF1078_RS00790 0.88 +0.1 188,896 + HMPREF1078_RS00790 0.88 -1.3 188,896 + HMPREF1078_RS00790 0.88 -1.9 188,896 + HMPREF1078_RS00790 0.88 -1.7 188,896 + HMPREF1078_RS00790 0.88 -1.7 188,896 + HMPREF1078_RS00790 0.88 -1.3 188,896 + HMPREF1078_RS00790 0.88 -2.0 188,896 + HMPREF1078_RS00790 0.88 +0.4 188,896 + HMPREF1078_RS00790 0.88 -0.4 188,896 + HMPREF1078_RS00790 0.88 -0.2 188,897 - HMPREF1078_RS00790 0.88 -2.4 188,897 - HMPREF1078_RS00790 0.88 -0.6 188,897 - HMPREF1078_RS00790 0.88 -0.7 188,897 - HMPREF1078_RS00790 0.88 +0.4 188,897 - HMPREF1078_RS00790 0.88 -0.2 188,899 + HMPREF1078_RS00790 0.88 -1.0 188,900 - HMPREF1078_RS00790 0.88 -0.2 188,900 - HMPREF1078_RS00790 0.88 -1.1 188,900 - HMPREF1078_RS00790 0.88 -0.2 188,900 - HMPREF1078_RS00790 0.88 -0.8 188,930 - +0.3 188,930 - +0.2 188,935 - -1.4 188,957 + +0.1 188,995 + -1.5 188,996 - -0.7 188,999 + -1.9 188,999 + -0.8 189,024 + -1.0 189,025 - +0.1 189,073 + -1.0 189,073 + -0.3 189,073 + -0.9 189,074 - +1.4 189,074 - -1.1 189,074 - -1.0 189,078 + +0.8 189,085 + -1.5 189,085 + -0.6 189,085 + -1.1 189,112 + -1.9 189,129 + -0.1 189,129 + +0.6 189,134 - -1.3 189,160 - +0.6 189,187 - -0.2 189,190 + -0.5 189,224 + -0.2 189,231 + +0.1 189,234 + -1.0 189,234 + -1.5 189,250 + +0.4 189,254 + -0.5 189,264 + -0.8 189,264 + -1.3 189,264 + -1.1 189,266 + -0.9 189,266 + +0.2 189,271 + +0.3 189,278 + -2.2 189,307 + -1.6 189,354 + -1.3 189,368 + -2.4 189,368 + -0.4 189,385 + HMPREF1078_RS00795 0.13 -2.0 189,385 + HMPREF1078_RS00795 0.13 -2.0 189,385 + HMPREF1078_RS00795 0.13 -1.9 189,407 + HMPREF1078_RS00795 0.16 -2.8 189,407 + HMPREF1078_RS00795 0.16 -0.3 189,412 + HMPREF1078_RS00795 0.17 -2.2 189,412 + HMPREF1078_RS00795 0.17 -1.0 189,420 + HMPREF1078_RS00795 0.19 +0.0 189,426 + HMPREF1078_RS00795 0.20 -0.9 189,431 + HMPREF1078_RS00795 0.21 -2.8 189,431 + HMPREF1078_RS00795 0.21 -1.4 189,431 + HMPREF1078_RS00795 0.21 -1.3 189,433 + HMPREF1078_RS00795 0.21 -1.9 189,461 + HMPREF1078_RS00795 0.26 -3.5 189,461 + HMPREF1078_RS00795 0.26 -1.8 189,491 + HMPREF1078_RS00795 0.31 -0.9 189,634 + HMPREF1078_RS00795 0.55 -1.5 189,634 + HMPREF1078_RS00795 0.55 +0.1 189,641 + HMPREF1078_RS00795 0.56 -2.1 189,641 + HMPREF1078_RS00795 0.56 -1.3 189,641 + HMPREF1078_RS00795 0.56 -3.2 189,644 + HMPREF1078_RS00795 0.56 -1.2 189,674 + HMPREF1078_RS00795 0.61 -1.9 189,682 + HMPREF1078_RS00795 0.63 -0.9 189,762 + HMPREF1078_RS00795 0.76 +0.3 189,765 + HMPREF1078_RS00795 0.77 -1.0 189,765 + HMPREF1078_RS00795 0.77 -1.9 189,800 + HMPREF1078_RS00795 0.83 -2.6 189,800 + HMPREF1078_RS00795 0.83 +0.7 189,800 + HMPREF1078_RS00795 0.83 -1.0 189,808 + HMPREF1078_RS00795 0.84 -1.3 189,818 + HMPREF1078_RS00795 0.86 -1.7 189,819 + HMPREF1078_RS00795 0.86 -2.8 189,833 + HMPREF1078_RS00795 0.88 -2.2 189,833 + HMPREF1078_RS00795 0.88 -1.6 189,833 + HMPREF1078_RS00795 0.88 -1.6 189,833 + HMPREF1078_RS00795 0.88 -0.8 189,904 - -0.4 190,128 - -0.4 190,306 + +0.3 190,306 + -0.5 190,306 + -0.8 190,306 + -0.3 190,306 + +0.2 190,306 + +0.2 190,316 + -3.1 190,317 - -1.0 190,337 - -0.6 190,337 - -0.8 190,337 - -1.3 190,348 - -0.6 190,401 + -1.2 190,402 - +0.2 190,402 - -0.2 190,414 + -1.6 190,428 + -0.5 190,431 + -1.0 190,483 + -0.9 190,483 + +0.1 190,483 + +0.9 190,602 + -2.0 190,626 + -1.0 190,664 + -1.0
Or see this region's nucleotide sequence