Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00290 and HMPREF1078_RS00295 are separated by 59 nucleotides HMPREF1078_RS00295 and HMPREF1078_RS00300 are separated by 106 nucleotides HMPREF1078_RS00300 and HMPREF1078_RS00305 are separated by 477 nucleotides
HMPREF1078_RS00290: HMPREF1078_RS00290 - translation initiation factor IF-3, at 62,927 to 63,541
_RS00290
HMPREF1078_RS00295: HMPREF1078_RS00295 - 50S ribosomal protein L35, at 63,601 to 63,798
_RS00295
HMPREF1078_RS00300: HMPREF1078_RS00300 - 50S ribosomal protein L20, at 63,905 to 64,249
_RS00300
HMPREF1078_RS00305: HMPREF1078_RS00305 - family 20 glycosylhydrolase, at 64,727 to 66,901
_RS00305
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.571 kb on + strand at 63.585 kb on + strand at 63.606 kb on + strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.618 kb on + strand at 63.732 kb on + strand, within HMPREF1078_RS00295 at 63.732 kb on + strand, within HMPREF1078_RS00295 at 63.753 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.764 kb on + strand, within HMPREF1078_RS00295 at 63.774 kb on + strand, within HMPREF1078_RS00295 at 63.796 kb on + strand at 63.796 kb on + strand at 63.810 kb on + strand at 63.821 kb on + strand at 63.856 kb on + strand at 64.330 kb on + strand at 64.330 kb on + strand at 64.330 kb on + strand at 64.331 kb on - strand at 64.337 kb on + strand at 64.337 kb on + strand at 64.338 kb on - strand at 64.397 kb on + strand at 64.459 kb on + strand at 64.460 kb on - strand at 64.460 kb on - strand at 64.472 kb on + strand at 64.473 kb on - strand at 64.473 kb on - strand at 64.504 kb on + strand at 64.505 kb on - strand at 64.519 kb on + strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.523 kb on + strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.524 kb on - strand at 64.540 kb on + strand at 64.540 kb on + strand at 64.544 kb on + strand at 64.544 kb on + strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.545 kb on - strand at 64.552 kb on + strand at 64.552 kb on + strand at 64.553 kb on - strand at 64.553 kb on - strand at 64.553 kb on - strand at 64.568 kb on + strand at 64.568 kb on + strand at 64.569 kb on - strand at 64.598 kb on + strand at 64.614 kb on - strand at 64.627 kb on - strand at 64.635 kb on + strand at 64.636 kb on - strand at 64.659 kb on + strand at 64.660 kb on - strand at 64.684 kb on + strand at 64.684 kb on + strand at 64.684 kb on + strand at 64.685 kb on - strand at 64.685 kb on - strand at 64.687 kb on - strand at 64.722 kb on + strand at 64.723 kb on - strand at 64.726 kb on + strand at 64.727 kb on - strand at 64.732 kb on - strand at 64.758 kb on + strand at 64.831 kb on + strand at 64.832 kb on - strand at 64.882 kb on + strand at 64.918 kb on + strand at 64.919 kb on - strand at 65.054 kb on + strand, within HMPREF1078_RS00305 at 65.054 kb on + strand, within HMPREF1078_RS00305 at 65.054 kb on + strand, within HMPREF1078_RS00305 at 65.093 kb on - strand, within HMPREF1078_RS00305 at 65.130 kb on + strand, within HMPREF1078_RS00305 at 65.131 kb on - strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.209 kb on + strand, within HMPREF1078_RS00305 at 65.210 kb on - strand, within HMPREF1078_RS00305 at 65.210 kb on - strand, within HMPREF1078_RS00305 at 65.210 kb on - strand, within HMPREF1078_RS00305 at 65.210 kb on - strand, within HMPREF1078_RS00305 at 65.210 kb on - strand, within HMPREF1078_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 63,571 + +2.3 63,585 + +1.4 63,606 + +0.9 63,618 + +1.7 63,618 + +0.7 63,618 + -0.4 63,732 + HMPREF1078_RS00295 0.66 -0.4 63,732 + HMPREF1078_RS00295 0.66 -1.5 63,753 + HMPREF1078_RS00295 0.77 -1.1 63,764 + HMPREF1078_RS00295 0.82 -1.2 63,764 + HMPREF1078_RS00295 0.82 -1.0 63,764 + HMPREF1078_RS00295 0.82 -1.5 63,774 + HMPREF1078_RS00295 0.87 -0.3 63,796 + +0.5 63,796 + +1.1 63,810 + +0.4 63,821 + +1.8 63,856 + +0.2 64,330 + +2.3 64,330 + +2.4 64,330 + +1.7 64,331 - +0.8 64,337 + +0.3 64,337 + +1.8 64,338 - +0.4 64,397 + +0.8 64,459 + +2.1 64,460 - -0.4 64,460 - -0.3 64,472 + +2.4 64,473 - +3.2 64,473 - +0.3 64,504 + -0.6 64,505 - +0.6 64,519 + +2.6 64,520 - +2.5 64,520 - +0.9 64,520 - +1.6 64,520 - +0.8 64,520 - +2.7 64,520 - -1.1 64,523 + +1.1 64,523 + -0.2 64,523 + +0.2 64,523 + +2.2 64,523 + +1.7 64,524 - -0.7 64,524 - +0.9 64,524 - +1.9 64,524 - +2.4 64,540 + -0.4 64,540 + +0.0 64,544 + +0.2 64,544 + +0.1 64,545 - +1.0 64,545 - +1.6 64,545 - +1.7 64,545 - +1.6 64,545 - -2.6 64,552 + +0.9 64,552 + +0.6 64,553 - +0.9 64,553 - +1.3 64,553 - -0.3 64,568 + +0.0 64,568 + +0.8 64,569 - +0.4 64,598 + +0.3 64,614 - +0.2 64,627 - +0.7 64,635 + +0.3 64,636 - +1.0 64,659 + -0.8 64,660 - -1.3 64,684 + +2.7 64,684 + -1.1 64,684 + -0.1 64,685 - +0.5 64,685 - -0.6 64,687 - +0.4 64,722 + +1.0 64,723 - -0.7 64,726 + -0.6 64,727 - -0.4 64,732 - +0.0 64,758 + +0.6 64,831 + -0.1 64,832 - -0.3 64,882 + +0.6 64,918 + +0.1 64,919 - -0.2 65,054 + HMPREF1078_RS00305 0.15 -0.1 65,054 + HMPREF1078_RS00305 0.15 -0.6 65,054 + HMPREF1078_RS00305 0.15 +0.8 65,093 - HMPREF1078_RS00305 0.17 -0.8 65,130 + HMPREF1078_RS00305 0.19 -0.6 65,131 - HMPREF1078_RS00305 0.19 +1.7 65,209 + HMPREF1078_RS00305 0.22 +0.0 65,209 + HMPREF1078_RS00305 0.22 -3.0 65,209 + HMPREF1078_RS00305 0.22 -0.1 65,209 + HMPREF1078_RS00305 0.22 -0.3 65,209 + HMPREF1078_RS00305 0.22 -0.4 65,209 + HMPREF1078_RS00305 0.22 -0.4 65,210 - HMPREF1078_RS00305 0.22 -0.5 65,210 - HMPREF1078_RS00305 0.22 -3.4 65,210 - HMPREF1078_RS00305 0.22 -0.4 65,210 - HMPREF1078_RS00305 0.22 -1.2 65,210 - HMPREF1078_RS00305 0.22 -0.3
Or see this region's nucleotide sequence