Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00145 and HMPREF1078_RS00150 are separated by 61 nucleotides HMPREF1078_RS00150 and HMPREF1078_RS00155 are separated by 678 nucleotides
HMPREF1078_RS00145: HMPREF1078_RS00145 - anthranilate synthase component I family protein, at 32,299 to 33,702
_RS00145
HMPREF1078_RS00150: HMPREF1078_RS00150 - tryptophan synthase subunit beta, at 33,764 to 34,957
_RS00150
HMPREF1078_RS00155: HMPREF1078_RS00155 - FecR domain-containing protein, at 35,636 to 36,517
_RS00155
Position (kb) 33
34
35 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 33.095 kb on + strand, within HMPREF1078_RS00145 at 33.145 kb on - strand, within HMPREF1078_RS00145 at 33.146 kb on + strand, within HMPREF1078_RS00145 at 33.155 kb on + strand, within HMPREF1078_RS00145 at 33.155 kb on + strand, within HMPREF1078_RS00145 at 33.156 kb on - strand, within HMPREF1078_RS00145 at 33.170 kb on - strand, within HMPREF1078_RS00145 at 33.182 kb on - strand, within HMPREF1078_RS00145 at 33.182 kb on - strand, within HMPREF1078_RS00145 at 33.262 kb on + strand, within HMPREF1078_RS00145 at 33.263 kb on - strand, within HMPREF1078_RS00145 at 33.266 kb on + strand, within HMPREF1078_RS00145 at 33.266 kb on + strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.267 kb on - strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.270 kb on + strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.271 kb on - strand, within HMPREF1078_RS00145 at 33.272 kb on + strand, within HMPREF1078_RS00145 at 33.274 kb on + strand, within HMPREF1078_RS00145 at 33.275 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.278 kb on - strand, within HMPREF1078_RS00145 at 33.281 kb on + strand, within HMPREF1078_RS00145 at 33.281 kb on + strand, within HMPREF1078_RS00145 at 33.282 kb on - strand, within HMPREF1078_RS00145 at 33.282 kb on - strand, within HMPREF1078_RS00145 at 33.367 kb on - strand, within HMPREF1078_RS00145 at 33.554 kb on + strand, within HMPREF1078_RS00145 at 33.614 kb on + strand at 33.626 kb on - strand at 33.639 kb on + strand at 33.640 kb on - strand at 33.651 kb on + strand at 33.651 kb on + strand at 33.652 kb on - strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.693 kb on + strand at 33.694 kb on - strand at 33.694 kb on - strand at 33.696 kb on - strand at 33.704 kb on - strand at 33.704 kb on - strand at 33.725 kb on + strand at 33.736 kb on + strand at 33.738 kb on - strand at 33.785 kb on - strand at 33.790 kb on + strand at 33.790 kb on + strand at 33.790 kb on + strand at 33.791 kb on - strand at 33.793 kb on + strand at 33.793 kb on + strand at 33.794 kb on - strand at 33.794 kb on - strand at 33.795 kb on + strand at 33.795 kb on + strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.796 kb on - strand at 33.811 kb on + strand at 33.864 kb on - strand at 33.868 kb on + strand at 33.882 kb on - strand at 33.882 kb on - strand at 33.947 kb on + strand, within HMPREF1078_RS00150 at 34.086 kb on - strand, within HMPREF1078_RS00150 at 34.091 kb on + strand, within HMPREF1078_RS00150 at 34.092 kb on - strand, within HMPREF1078_RS00150 at 34.109 kb on + strand, within HMPREF1078_RS00150 at 34.109 kb on + strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.110 kb on - strand, within HMPREF1078_RS00150 at 34.115 kb on - strand, within HMPREF1078_RS00150 at 34.253 kb on + strand, within HMPREF1078_RS00150 at 34.254 kb on - strand, within HMPREF1078_RS00150 at 34.254 kb on - strand, within HMPREF1078_RS00150 at 34.360 kb on - strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.392 kb on + strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.393 kb on - strand, within HMPREF1078_RS00150 at 34.395 kb on + strand, within HMPREF1078_RS00150 at 34.395 kb on + strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.396 kb on - strand, within HMPREF1078_RS00150 at 34.473 kb on - strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.551 kb on + strand, within HMPREF1078_RS00150 at 34.559 kb on - strand, within HMPREF1078_RS00150 at 34.559 kb on - strand, within HMPREF1078_RS00150 at 34.568 kb on - strand, within HMPREF1078_RS00150 at 34.633 kb on + strand, within HMPREF1078_RS00150 at 34.633 kb on + strand, within HMPREF1078_RS00150 at 34.690 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.728 kb on + strand, within HMPREF1078_RS00150 at 34.729 kb on - strand, within HMPREF1078_RS00150 at 34.729 kb on - strand, within HMPREF1078_RS00150 at 34.730 kb on + strand, within HMPREF1078_RS00150 at 34.731 kb on - strand, within HMPREF1078_RS00150 at 34.731 kb on - strand, within HMPREF1078_RS00150 at 34.743 kb on + strand, within HMPREF1078_RS00150 at 34.743 kb on + strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.744 kb on - strand, within HMPREF1078_RS00150 at 34.795 kb on - strand, within HMPREF1078_RS00150 at 34.844 kb on + strand at 34.854 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.902 kb on + strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.903 kb on - strand at 34.923 kb on + strand at 34.923 kb on + strand at 34.924 kb on - strand at 34.924 kb on - strand at 34.963 kb on + strand at 34.964 kb on - strand at 34.971 kb on - strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.050 kb on + strand at 35.051 kb on - strand at 35.051 kb on - strand at 35.051 kb on - strand at 35.053 kb on + strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.054 kb on - strand at 35.056 kb on - strand at 35.056 kb on - strand at 35.056 kb on - strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.063 kb on + strand at 35.064 kb on - strand at 35.064 kb on - strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.066 kb on + strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.068 kb on + strand at 35.068 kb on + strand at 35.069 kb on - strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.070 kb on + strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.071 kb on - strand at 35.098 kb on - strand at 35.107 kb on - strand at 35.107 kb on - strand at 35.107 kb on - strand at 35.125 kb on + strand at 35.125 kb on + strand at 35.126 kb on - strand at 35.126 kb on - strand at 35.129 kb on + strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.130 kb on - strand at 35.134 kb on - strand at 35.134 kb on - strand at 35.136 kb on + strand at 35.137 kb on - strand at 35.137 kb on - strand at 35.138 kb on + strand at 35.138 kb on + strand at 35.138 kb on + strand at 35.139 kb on - strand at 35.226 kb on + strand at 35.228 kb on + strand at 35.230 kb on + strand at 35.278 kb on - strand at 35.278 kb on - strand at 35.313 kb on - strand at 35.355 kb on + strand at 35.356 kb on - strand at 35.377 kb on + strand at 35.377 kb on + strand at 35.409 kb on - strand at 35.479 kb on - strand at 35.498 kb on + strand at 35.499 kb on - strand at 35.513 kb on + strand at 35.594 kb on - strand at 35.609 kb on + strand at 35.615 kb on + strand at 35.656 kb on + strand at 35.657 kb on - strand at 35.659 kb on - strand at 35.659 kb on - strand at 35.844 kb on - strand, within HMPREF1078_RS00155 at 35.901 kb on + strand, within HMPREF1078_RS00155 at 35.902 kb on - strand, within HMPREF1078_RS00155 at 35.905 kb on + strand, within HMPREF1078_RS00155 at 35.957 kb on + strand, within HMPREF1078_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 33,095 + HMPREF1078_RS00145 0.57 -1.2 33,145 - HMPREF1078_RS00145 0.60 -0.4 33,146 + HMPREF1078_RS00145 0.60 -1.9 33,155 + HMPREF1078_RS00145 0.61 -2.4 33,155 + HMPREF1078_RS00145 0.61 -2.5 33,156 - HMPREF1078_RS00145 0.61 -1.7 33,170 - HMPREF1078_RS00145 0.62 -0.7 33,182 - HMPREF1078_RS00145 0.63 -3.0 33,182 - HMPREF1078_RS00145 0.63 -2.0 33,262 + HMPREF1078_RS00145 0.69 -2.6 33,263 - HMPREF1078_RS00145 0.69 -2.0 33,266 + HMPREF1078_RS00145 0.69 -0.8 33,266 + HMPREF1078_RS00145 0.69 -3.2 33,267 - HMPREF1078_RS00145 0.69 -1.9 33,267 - HMPREF1078_RS00145 0.69 -3.6 33,267 - HMPREF1078_RS00145 0.69 -2.2 33,267 - HMPREF1078_RS00145 0.69 +0.2 33,267 - HMPREF1078_RS00145 0.69 -3.6 33,270 + HMPREF1078_RS00145 0.69 -1.2 33,270 + HMPREF1078_RS00145 0.69 -4.1 33,270 + HMPREF1078_RS00145 0.69 -1.4 33,271 - HMPREF1078_RS00145 0.69 +0.2 33,271 - HMPREF1078_RS00145 0.69 -2.6 33,271 - HMPREF1078_RS00145 0.69 -1.1 33,271 - HMPREF1078_RS00145 0.69 -1.7 33,271 - HMPREF1078_RS00145 0.69 -2.9 33,271 - HMPREF1078_RS00145 0.69 -3.2 33,271 - HMPREF1078_RS00145 0.69 -3.5 33,272 + HMPREF1078_RS00145 0.69 -0.3 33,274 + HMPREF1078_RS00145 0.69 -0.0 33,275 - HMPREF1078_RS00145 0.70 -0.9 33,278 - HMPREF1078_RS00145 0.70 -2.1 33,278 - HMPREF1078_RS00145 0.70 +1.8 33,278 - HMPREF1078_RS00145 0.70 -3.0 33,278 - HMPREF1078_RS00145 0.70 -1.0 33,278 - HMPREF1078_RS00145 0.70 -0.4 33,278 - HMPREF1078_RS00145 0.70 -1.1 33,281 + HMPREF1078_RS00145 0.70 -2.3 33,281 + HMPREF1078_RS00145 0.70 -0.2 33,282 - HMPREF1078_RS00145 0.70 -0.3 33,282 - HMPREF1078_RS00145 0.70 -2.2 33,367 - HMPREF1078_RS00145 0.76 -1.8 33,554 + HMPREF1078_RS00145 0.89 -1.7 33,614 + -3.3 33,626 - +0.5 33,639 + -0.6 33,640 - -0.2 33,651 + -1.0 33,651 + -3.5 33,652 - -2.6 33,693 + -3.5 33,693 + -3.4 33,693 + -2.7 33,693 + -2.8 33,694 - -0.8 33,694 - -0.5 33,696 - -1.6 33,704 - -1.7 33,704 - -1.8 33,725 + -2.3 33,736 + -2.5 33,738 - -0.5 33,785 - -0.2 33,790 + -4.3 33,790 + -2.1 33,790 + -4.8 33,791 - -0.2 33,793 + -1.1 33,793 + -2.4 33,794 - +1.4 33,794 - -0.4 33,795 + -2.4 33,795 + -2.3 33,796 - -0.0 33,796 - -3.4 33,796 - -2.4 33,796 - -1.5 33,796 - -2.2 33,796 - -1.3 33,811 + -0.7 33,864 - -1.6 33,868 + -3.4 33,882 - -1.0 33,882 - -0.5 33,947 + HMPREF1078_RS00150 0.15 +0.5 34,086 - HMPREF1078_RS00150 0.27 -3.5 34,091 + HMPREF1078_RS00150 0.27 -1.2 34,092 - HMPREF1078_RS00150 0.27 -3.3 34,109 + HMPREF1078_RS00150 0.29 -4.1 34,109 + HMPREF1078_RS00150 0.29 -0.9 34,110 - HMPREF1078_RS00150 0.29 -2.7 34,110 - HMPREF1078_RS00150 0.29 -3.2 34,110 - HMPREF1078_RS00150 0.29 -1.9 34,110 - HMPREF1078_RS00150 0.29 -1.5 34,110 - HMPREF1078_RS00150 0.29 -1.0 34,115 - HMPREF1078_RS00150 0.29 -1.2 34,253 + HMPREF1078_RS00150 0.41 -2.9 34,254 - HMPREF1078_RS00150 0.41 -2.4 34,254 - HMPREF1078_RS00150 0.41 -1.4 34,360 - HMPREF1078_RS00150 0.50 -4.2 34,392 + HMPREF1078_RS00150 0.53 -4.8 34,392 + HMPREF1078_RS00150 0.53 -1.5 34,392 + HMPREF1078_RS00150 0.53 -2.0 34,392 + HMPREF1078_RS00150 0.53 -1.3 34,392 + HMPREF1078_RS00150 0.53 -3.0 34,392 + HMPREF1078_RS00150 0.53 +1.2 34,392 + HMPREF1078_RS00150 0.53 -1.0 34,393 - HMPREF1078_RS00150 0.53 -0.9 34,393 - HMPREF1078_RS00150 0.53 -5.5 34,393 - HMPREF1078_RS00150 0.53 -2.8 34,395 + HMPREF1078_RS00150 0.53 -2.4 34,395 + HMPREF1078_RS00150 0.53 -0.8 34,396 - HMPREF1078_RS00150 0.53 -1.0 34,396 - HMPREF1078_RS00150 0.53 -1.0 34,396 - HMPREF1078_RS00150 0.53 -0.8 34,473 - HMPREF1078_RS00150 0.59 -1.5 34,551 + HMPREF1078_RS00150 0.66 -3.0 34,551 + HMPREF1078_RS00150 0.66 -1.9 34,551 + HMPREF1078_RS00150 0.66 -3.0 34,559 - HMPREF1078_RS00150 0.67 -1.3 34,559 - HMPREF1078_RS00150 0.67 -1.9 34,568 - HMPREF1078_RS00150 0.67 -2.0 34,633 + HMPREF1078_RS00150 0.73 -2.0 34,633 + HMPREF1078_RS00150 0.73 -0.5 34,690 + HMPREF1078_RS00150 0.78 -2.6 34,728 + HMPREF1078_RS00150 0.81 -4.1 34,728 + HMPREF1078_RS00150 0.81 -0.8 34,728 + HMPREF1078_RS00150 0.81 -4.0 34,728 + HMPREF1078_RS00150 0.81 -3.4 34,728 + HMPREF1078_RS00150 0.81 -3.0 34,729 - HMPREF1078_RS00150 0.81 +0.1 34,729 - HMPREF1078_RS00150 0.81 -0.9 34,730 + HMPREF1078_RS00150 0.81 -2.5 34,731 - HMPREF1078_RS00150 0.81 +0.5 34,731 - HMPREF1078_RS00150 0.81 -3.2 34,743 + HMPREF1078_RS00150 0.82 -2.1 34,743 + HMPREF1078_RS00150 0.82 -2.7 34,744 - HMPREF1078_RS00150 0.82 -1.6 34,744 - HMPREF1078_RS00150 0.82 -3.9 34,744 - HMPREF1078_RS00150 0.82 -3.2 34,795 - HMPREF1078_RS00150 0.86 -2.3 34,844 + -1.6 34,854 + -2.2 34,902 + -2.7 34,902 + -1.4 34,902 + -2.5 34,902 + -0.8 34,903 - -2.7 34,903 - -1.2 34,903 - -3.2 34,903 - -1.5 34,903 - -0.5 34,903 - -3.4 34,903 - -2.7 34,903 - -1.3 34,903 - -1.3 34,923 + -1.9 34,923 + -0.2 34,924 - -3.3 34,924 - -2.4 34,963 + -1.3 34,964 - +1.9 34,971 - +0.6 35,050 + -3.5 35,050 + -2.4 35,050 + -3.0 35,050 + -2.7 35,050 + -0.9 35,050 + +1.0 35,051 - +0.0 35,051 - +0.3 35,051 - -0.2 35,053 + -1.4 35,054 - +1.0 35,054 - -1.7 35,054 - +1.3 35,054 - +2.1 35,056 - +0.9 35,056 - +1.6 35,056 - +1.1 35,063 + -1.6 35,063 + -1.0 35,063 + -1.9 35,063 + +2.8 35,064 - +1.4 35,064 - -0.6 35,066 + -3.0 35,066 + -3.2 35,066 + -3.9 35,066 + -0.7 35,066 + +0.4 35,066 + -3.6 35,066 + +0.8 35,066 + -2.8 35,067 - +0.3 35,067 - +0.8 35,067 - -0.3 35,067 - +2.3 35,068 + -3.1 35,068 + -0.8 35,069 - +0.6 35,070 + -2.4 35,070 + -1.3 35,070 + -1.7 35,070 + -3.1 35,070 + -1.6 35,071 - +1.4 35,071 - +0.4 35,071 - +0.5 35,071 - +1.1 35,071 - -0.1 35,098 - +0.5 35,107 - -0.7 35,107 - -0.0 35,107 - +0.8 35,125 + -0.7 35,125 + +0.5 35,126 - +1.7 35,126 - +1.2 35,129 + -1.9 35,130 - +1.0 35,130 - -2.2 35,130 - +1.2 35,130 - -1.8 35,130 - -3.1 35,130 - +0.9 35,130 - +2.0 35,130 - -1.6 35,134 - -0.0 35,134 - -0.6 35,136 + -2.1 35,137 - +1.4 35,137 - +2.0 35,138 + -2.4 35,138 + -0.7 35,138 + -2.6 35,139 - -0.4 35,226 + +1.2 35,228 + -0.7 35,230 + -0.4 35,278 - -0.6 35,278 - +1.8 35,313 - -0.8 35,355 + +0.5 35,356 - +0.5 35,377 + +0.7 35,377 + +1.7 35,409 - +0.3 35,479 - +0.5 35,498 + +0.2 35,499 - +0.8 35,513 + +1.5 35,594 - -0.1 35,609 + -0.4 35,615 + -0.7 35,656 + +0.5 35,657 - +0.4 35,659 - -0.3 35,659 - +0.0 35,844 - HMPREF1078_RS00155 0.24 -0.2 35,901 + HMPREF1078_RS00155 0.30 -0.6 35,902 - HMPREF1078_RS00155 0.30 +1.2 35,905 + HMPREF1078_RS00155 0.30 +1.0 35,957 + HMPREF1078_RS00155 0.36 -3.4
Or see this region's nucleotide sequence