Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00145

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
31,305	-		HMPREF1078_RS00135	0.64	-3.2
31,360	+		HMPREF1078_RS00135	0.69	-2.6
31,360	+		HMPREF1078_RS00135	0.69	-1.0
31,403	-		HMPREF1078_RS00135	0.73	-3.0
31,411	+		HMPREF1078_RS00135	0.74	-1.8
31,529	-		HMPREF1078_RS00135	0.86	-0.5
31,529	-		HMPREF1078_RS00135	0.86	-1.7
31,531	+		HMPREF1078_RS00135	0.86	-1.5
31,531	+		HMPREF1078_RS00135	0.86	-0.3
31,532	-		HMPREF1078_RS00135	0.86	-2.5
31,544	+		HMPREF1078_RS00135	0.87	-2.6
31,576	+				-2.0
31,577	-				-1.8
31,594	+				-3.2
31,632	+				-4.2
31,633	-				-2.2
31,647	-				-0.2
31,651	+				-2.8
31,652	-				-3.4
31,652	-				-3.4
31,652	-				-2.2
31,652	-				-2.4
31,652	-				-2.5
31,652	-				-2.7
31,653	+				-2.8
31,654	-				-1.7
31,654	-				-2.0
31,655	+				-3.6
31,655	+				-2.3
31,655	+				-2.1
31,655	+				-1.5
31,655	+				-1.1
31,655	+				-3.6
31,655	+				-1.5
31,655	+				-2.5
31,655	+				-3.4
31,655	+				-2.1
31,655	+				-3.9
31,655	+				-2.3
31,656	-				-3.0
31,656	-				-2.0
31,656	-				+0.5
31,656	-				+1.2
31,656	-				-4.2
31,656	-				-1.7
31,656	-				-0.9
31,656	-				-0.8
31,656	-				-2.0
31,658	+				-3.6
31,659	-				-2.5
31,659	-				-2.6
31,789	-		HMPREF1078_RS00140	0.16	+0.9
31,924	+		HMPREF1078_RS00140	0.39	-1.3
31,952	+		HMPREF1078_RS00140	0.44	-3.1
31,953	-		HMPREF1078_RS00140	0.44	-0.5
31,953	-		HMPREF1078_RS00140	0.44	+0.0
31,953	-		HMPREF1078_RS00140	0.44	+0.5
31,953	-		HMPREF1078_RS00140	0.44	+1.1
31,976	+		HMPREF1078_RS00140	0.48	-1.7
31,976	+		HMPREF1078_RS00140	0.48	-1.5
31,977	-		HMPREF1078_RS00140	0.49	+0.4
31,977	-		HMPREF1078_RS00140	0.49	-0.9
31,977	-		HMPREF1078_RS00140	0.49	+1.3
31,977	-		HMPREF1078_RS00140	0.49	+0.6
31,993	+		HMPREF1078_RS00140	0.51	-2.6
32,184	-		HMPREF1078_RS00140	0.85	-0.7
32,213	+				-2.6
32,213	+				+0.3
32,213	+				-1.8
32,213	+				-2.0
32,213	+				-1.5
32,215	+				-3.9
32,216	-				+1.0
32,216	-				+1.1
32,216	-				-0.7
32,244	+				+1.2
32,245	-				-1.4
32,258	+				-3.0
32,262	-				-0.8
32,417	+				-1.1
32,417	+				-3.1
32,421	-				+0.2
32,449	-		HMPREF1078_RS00145	0.11	-2.2
32,449	-		HMPREF1078_RS00145	0.11	-1.0
32,533	+		HMPREF1078_RS00145	0.17	-2.4
32,560	+		HMPREF1078_RS00145	0.19	-2.7
32,561	-		HMPREF1078_RS00145	0.19	-1.5
32,561	-		HMPREF1078_RS00145	0.19	-1.4
32,561	-		HMPREF1078_RS00145	0.19	-0.3
32,598	+		HMPREF1078_RS00145	0.21	-3.0
32,598	+		HMPREF1078_RS00145	0.21	-2.2
32,598	+		HMPREF1078_RS00145	0.21	-2.2
32,599	-		HMPREF1078_RS00145	0.21	-1.6
32,599	-		HMPREF1078_RS00145	0.21	+1.8
32,603	-		HMPREF1078_RS00145	0.22	-3.1
32,603	-		HMPREF1078_RS00145	0.22	-2.2
32,603	-		HMPREF1078_RS00145	0.22	-2.5
32,604	+		HMPREF1078_RS00145	0.22	-2.8
32,605	-		HMPREF1078_RS00145	0.22	-0.5
32,606	+		HMPREF1078_RS00145	0.22	-0.7
32,606	+		HMPREF1078_RS00145	0.22	+0.5
32,606	+		HMPREF1078_RS00145	0.22	-2.7
32,607	-		HMPREF1078_RS00145	0.22	-1.4
32,607	-		HMPREF1078_RS00145	0.22	-2.0
32,678	+		HMPREF1078_RS00145	0.27	-1.4
32,679	-		HMPREF1078_RS00145	0.27	-2.2
32,679	-		HMPREF1078_RS00145	0.27	-2.6
32,681	+		HMPREF1078_RS00145	0.27	-3.6
32,710	+		HMPREF1078_RS00145	0.29	-0.4
32,711	-		HMPREF1078_RS00145	0.29	-1.3
33,095	+		HMPREF1078_RS00145	0.57	-1.2
33,145	-		HMPREF1078_RS00145	0.60	-0.4
33,146	+		HMPREF1078_RS00145	0.60	-1.9
33,155	+		HMPREF1078_RS00145	0.61	-2.4
33,155	+		HMPREF1078_RS00145	0.61	-2.5
33,156	-		HMPREF1078_RS00145	0.61	-1.7
33,170	-		HMPREF1078_RS00145	0.62	-0.7
33,182	-		HMPREF1078_RS00145	0.63	-3.0
33,182	-		HMPREF1078_RS00145	0.63	-2.0
33,262	+		HMPREF1078_RS00145	0.69	-2.6
33,263	-		HMPREF1078_RS00145	0.69	-2.0
33,266	+		HMPREF1078_RS00145	0.69	-0.8
33,266	+		HMPREF1078_RS00145	0.69	-3.2
33,267	-		HMPREF1078_RS00145	0.69	-1.9
33,267	-		HMPREF1078_RS00145	0.69	-3.6
33,267	-		HMPREF1078_RS00145	0.69	-2.2
33,267	-		HMPREF1078_RS00145	0.69	+0.2
33,267	-		HMPREF1078_RS00145	0.69	-3.6
33,270	+		HMPREF1078_RS00145	0.69	-1.2
33,270	+		HMPREF1078_RS00145	0.69	-4.1
33,270	+		HMPREF1078_RS00145	0.69	-1.4
33,271	-		HMPREF1078_RS00145	0.69	+0.2
33,271	-		HMPREF1078_RS00145	0.69	-2.6
33,271	-		HMPREF1078_RS00145	0.69	-1.1
33,271	-		HMPREF1078_RS00145	0.69	-1.7
33,271	-		HMPREF1078_RS00145	0.69	-2.9
33,271	-		HMPREF1078_RS00145	0.69	-3.2
33,271	-		HMPREF1078_RS00145	0.69	-3.5
33,272	+		HMPREF1078_RS00145	0.69	-0.3
33,274	+		HMPREF1078_RS00145	0.69	-0.0
33,275	-		HMPREF1078_RS00145	0.70	-0.9
33,278	-		HMPREF1078_RS00145	0.70	-2.1
33,278	-		HMPREF1078_RS00145	0.70	+1.8
33,278	-		HMPREF1078_RS00145	0.70	-3.0
33,278	-		HMPREF1078_RS00145	0.70	-1.0
33,278	-		HMPREF1078_RS00145	0.70	-0.4
33,278	-		HMPREF1078_RS00145	0.70	-1.1
33,281	+		HMPREF1078_RS00145	0.70	-2.3
33,281	+		HMPREF1078_RS00145	0.70	-0.2
33,282	-		HMPREF1078_RS00145	0.70	-0.3
33,282	-		HMPREF1078_RS00145	0.70	-2.2
33,367	-		HMPREF1078_RS00145	0.76	-1.8
33,554	+		HMPREF1078_RS00145	0.89	-1.7
33,614	+				-3.3
33,626	-				+0.5
33,639	+				-0.6
33,640	-				-0.2
33,651	+				-1.0
33,651	+				-3.5
33,652	-				-2.6
33,693	+				-3.5
33,693	+				-3.4
33,693	+				-2.7
33,693	+				-2.8
33,694	-				-0.8
33,694	-				-0.5
33,696	-				-1.6
33,704	-				-1.7
33,704	-				-1.8
33,725	+				-2.3
33,736	+				-2.5
33,738	-				-0.5
33,785	-				-0.2
33,790	+				-4.3
33,790	+				-2.1
33,790	+				-4.8
33,791	-				-0.2
33,793	+				-1.1
33,793	+				-2.4
33,794	-				+1.4
33,794	-				-0.4
33,795	+				-2.4
33,795	+				-2.3
33,796	-				-0.0
33,796	-				-3.4
33,796	-				-2.4
33,796	-				-1.5
33,796	-				-2.2
33,796	-				-1.3
33,811	+				-0.7
33,864	-				-1.6
33,868	+				-3.4
33,882	-				-1.0
33,882	-				-0.5
33,947	+		HMPREF1078_RS00150	0.15	+0.5
34,086	-		HMPREF1078_RS00150	0.27	-3.5
34,091	+		HMPREF1078_RS00150	0.27	-1.2
34,092	-		HMPREF1078_RS00150	0.27	-3.3
34,109	+		HMPREF1078_RS00150	0.29	-4.1
34,109	+		HMPREF1078_RS00150	0.29	-0.9
34,110	-		HMPREF1078_RS00150	0.29	-2.7
34,110	-		HMPREF1078_RS00150	0.29	-3.2
34,110	-		HMPREF1078_RS00150	0.29	-1.9
34,110	-		HMPREF1078_RS00150	0.29	-1.5
34,110	-		HMPREF1078_RS00150	0.29	-1.0
34,115	-		HMPREF1078_RS00150	0.29	-1.2
34,253	+		HMPREF1078_RS00150	0.41	-2.9
34,254	-		HMPREF1078_RS00150	0.41	-2.4
34,254	-		HMPREF1078_RS00150	0.41	-1.4
34,360	-		HMPREF1078_RS00150	0.50	-4.2
34,392	+		HMPREF1078_RS00150	0.53	-4.8
34,392	+		HMPREF1078_RS00150	0.53	-1.5
34,392	+		HMPREF1078_RS00150	0.53	-2.0
34,392	+		HMPREF1078_RS00150	0.53	-1.3
34,392	+		HMPREF1078_RS00150	0.53	-3.0
34,392	+		HMPREF1078_RS00150	0.53	+1.2
34,392	+		HMPREF1078_RS00150	0.53	-1.0
34,393	-		HMPREF1078_RS00150	0.53	-0.9
34,393	-		HMPREF1078_RS00150	0.53	-5.5
34,393	-		HMPREF1078_RS00150	0.53	-2.8
34,395	+		HMPREF1078_RS00150	0.53	-2.4
34,395	+		HMPREF1078_RS00150	0.53	-0.8
34,396	-		HMPREF1078_RS00150	0.53	-1.0
34,396	-		HMPREF1078_RS00150	0.53	-1.0
34,396	-		HMPREF1078_RS00150	0.53	-0.8
34,473	-		HMPREF1078_RS00150	0.59	-1.5
34,551	+		HMPREF1078_RS00150	0.66	-3.0
34,551	+		HMPREF1078_RS00150	0.66	-1.9
34,551	+		HMPREF1078_RS00150	0.66	-3.0
34,559	-		HMPREF1078_RS00150	0.67	-1.3
34,559	-		HMPREF1078_RS00150	0.67	-1.9
34,568	-		HMPREF1078_RS00150	0.67	-2.0
34,633	+		HMPREF1078_RS00150	0.73	-2.0
34,633	+		HMPREF1078_RS00150	0.73	-0.5
34,690	+		HMPREF1078_RS00150	0.78	-2.6