Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00135

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dextrin from potato starch 2.5 mg/mL (C)
29,720	+		HMPREF1078_RS00125	0.81	-1.6
29,720	+		HMPREF1078_RS00125	0.81	-2.4
29,734	+		HMPREF1078_RS00125	0.83	-0.2
29,738	+		HMPREF1078_RS00125	0.83	-3.7
29,739	-		HMPREF1078_RS00125	0.83	-3.3
29,766	-		HMPREF1078_RS00125	0.88	-2.5
29,775	-		HMPREF1078_RS00125	0.89	-3.7
29,851	+				-2.9
29,852	-				+0.2
29,861	-				-0.8
29,887	+				-0.3
29,887	+				-2.4
29,990	-		HMPREF1078_RS00130	0.18	-2.2
30,003	+		HMPREF1078_RS00130	0.20	-2.8
30,067	-		HMPREF1078_RS00130	0.27	-1.7
30,090	+		HMPREF1078_RS00130	0.30	-2.8
30,106	-		HMPREF1078_RS00130	0.32	-2.4
30,178	-		HMPREF1078_RS00130	0.41	-3.2
30,198	+		HMPREF1078_RS00130	0.44	-1.6
30,257	-		HMPREF1078_RS00130	0.51	-1.0
30,350	-		HMPREF1078_RS00130	0.62	-1.9
30,434	-		HMPREF1078_RS00130	0.73	-0.8
30,435	+		HMPREF1078_RS00130	0.73	-2.9
30,436	-		HMPREF1078_RS00130	0.73	-1.0
30,451	+		HMPREF1078_RS00130	0.75	-1.9
30,619	+				-3.4
30,629	-				-1.5
30,630	+				-2.8
30,631	-				-3.4
30,631	-				-2.1
30,633	+				-0.9
30,633	+				-1.4
30,634	-				+0.0
30,640	+				-1.8
30,641	-				-1.3
30,641	-				-2.8
30,643	+				-0.5
30,643	+				-1.3
30,644	-				-0.9
30,644	-				-1.8
30,645	+				-3.0
30,645	+				-0.5
30,646	-				-2.3
30,646	-				-1.5
30,654	+				-3.2
30,654	+				-1.6
30,654	+				-0.5
30,697	+				-1.3
30,719	-				-2.1
30,812	+		HMPREF1078_RS00135	0.15	-2.7
30,945	+		HMPREF1078_RS00135	0.28	-3.1
30,946	-		HMPREF1078_RS00135	0.28	-4.4
31,019	-		HMPREF1078_RS00135	0.35	-3.0
31,022	+		HMPREF1078_RS00135	0.36	-2.3
31,023	-		HMPREF1078_RS00135	0.36	-3.3
31,057	+		HMPREF1078_RS00135	0.39	-1.3
31,057	+		HMPREF1078_RS00135	0.39	+2.1
31,058	-		HMPREF1078_RS00135	0.39	-2.5
31,058	-		HMPREF1078_RS00135	0.39	-2.4
31,058	-		HMPREF1078_RS00135	0.39	-2.1
31,058	-		HMPREF1078_RS00135	0.39	-0.9
31,060	-		HMPREF1078_RS00135	0.39	-2.0
31,060	-		HMPREF1078_RS00135	0.39	-1.7
31,060	-		HMPREF1078_RS00135	0.39	-3.2
31,060	-		HMPREF1078_RS00135	0.39	-0.0
31,089	+		HMPREF1078_RS00135	0.42	-2.1
31,090	-		HMPREF1078_RS00135	0.42	-3.7
31,097	+		HMPREF1078_RS00135	0.43	-1.5
31,108	-		HMPREF1078_RS00135	0.44	-4.2
31,108	-		HMPREF1078_RS00135	0.44	-1.1
31,227	+		HMPREF1078_RS00135	0.56	-0.4
31,305	-		HMPREF1078_RS00135	0.64	-3.2
31,360	+		HMPREF1078_RS00135	0.69	-2.6
31,360	+		HMPREF1078_RS00135	0.69	-1.0
31,403	-		HMPREF1078_RS00135	0.73	-3.0
31,411	+		HMPREF1078_RS00135	0.74	-1.8
31,529	-		HMPREF1078_RS00135	0.86	-0.5
31,529	-		HMPREF1078_RS00135	0.86	-1.7
31,531	+		HMPREF1078_RS00135	0.86	-1.5
31,531	+		HMPREF1078_RS00135	0.86	-0.3
31,532	-		HMPREF1078_RS00135	0.86	-2.5
31,544	+		HMPREF1078_RS00135	0.87	-2.6
31,576	+				-2.0
31,577	-				-1.8
31,594	+				-3.2
31,632	+				-4.2
31,633	-				-2.2
31,647	-				-0.2
31,651	+				-2.8
31,652	-				-3.4
31,652	-				-3.4
31,652	-				-2.2
31,652	-				-2.4
31,652	-				-2.5
31,652	-				-2.7
31,653	+				-2.8
31,654	-				-1.7
31,654	-				-2.0
31,655	+				-3.6
31,655	+				-2.3
31,655	+				-2.1
31,655	+				-1.5
31,655	+				-1.1
31,655	+				-3.6
31,655	+				-1.5
31,655	+				-2.5
31,655	+				-3.4
31,655	+				-2.1
31,655	+				-3.9
31,655	+				-2.3
31,656	-				-3.0
31,656	-				-2.0
31,656	-				+0.5
31,656	-				+1.2
31,656	-				-4.2
31,656	-				-1.7
31,656	-				-0.9
31,656	-				-0.8
31,656	-				-2.0
31,658	+				-3.6
31,659	-				-2.5
31,659	-				-2.6
31,789	-		HMPREF1078_RS00140	0.16	+0.9
31,924	+		HMPREF1078_RS00140	0.39	-1.3
31,952	+		HMPREF1078_RS00140	0.44	-3.1
31,953	-		HMPREF1078_RS00140	0.44	-0.5
31,953	-		HMPREF1078_RS00140	0.44	+0.0
31,953	-		HMPREF1078_RS00140	0.44	+0.5
31,953	-		HMPREF1078_RS00140	0.44	+1.1
31,976	+		HMPREF1078_RS00140	0.48	-1.7
31,976	+		HMPREF1078_RS00140	0.48	-1.5
31,977	-		HMPREF1078_RS00140	0.49	+0.4
31,977	-		HMPREF1078_RS00140	0.49	-0.9
31,977	-		HMPREF1078_RS00140	0.49	+1.3
31,977	-		HMPREF1078_RS00140	0.49	+0.6
31,993	+		HMPREF1078_RS00140	0.51	-2.6
32,184	-		HMPREF1078_RS00140	0.85	-0.7
32,213	+				-2.6
32,213	+				+0.3
32,213	+				-1.8
32,213	+				-2.0
32,213	+				-1.5
32,215	+				-3.9
32,216	-				+1.0
32,216	-				+1.1
32,216	-				-0.7
32,244	+				+1.2
32,245	-				-1.4
32,258	+				-3.0
32,262	-				-0.8
32,417	+				-1.1
32,417	+				-3.1
32,421	-				+0.2
32,449	-		HMPREF1078_RS00145	0.11	-2.2
32,449	-		HMPREF1078_RS00145	0.11	-1.0
32,533	+		HMPREF1078_RS00145	0.17	-2.4
32,560	+		HMPREF1078_RS00145	0.19	-2.7
32,561	-		HMPREF1078_RS00145	0.19	-1.5
32,561	-		HMPREF1078_RS00145	0.19	-1.4
32,561	-		HMPREF1078_RS00145	0.19	-0.3
32,598	+		HMPREF1078_RS00145	0.21	-3.0
32,598	+		HMPREF1078_RS00145	0.21	-2.2
32,598	+		HMPREF1078_RS00145	0.21	-2.2
32,599	-		HMPREF1078_RS00145	0.21	-1.6
32,599	-		HMPREF1078_RS00145	0.21	+1.8
32,603	-		HMPREF1078_RS00145	0.22	-3.1
32,603	-		HMPREF1078_RS00145	0.22	-2.2
32,603	-		HMPREF1078_RS00145	0.22	-2.5
32,604	+		HMPREF1078_RS00145	0.22	-2.8
32,605	-		HMPREF1078_RS00145	0.22	-0.5
32,606	+		HMPREF1078_RS00145	0.22	-0.7
32,606	+		HMPREF1078_RS00145	0.22	+0.5
32,606	+		HMPREF1078_RS00145	0.22	-2.7
32,607	-		HMPREF1078_RS00145	0.22	-1.4
32,607	-		HMPREF1078_RS00145	0.22	-2.0