Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00120

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00115 and HMPREF1078_RS00120 are separated by 303 nucleotidesHMPREF1078_RS00120 and HMPREF1078_RS00125 are separated by 22 nucleotidesHMPREF1078_RS00125 and HMPREF1078_RS00130 overlap by 4 nucleotides HMPREF1078_RS00115: HMPREF1078_RS00115 - IS256 family transposase, at 26,875 to 28,086 _RS00115 HMPREF1078_RS00120: HMPREF1078_RS00120 - tryptophan synthase subunit alpha, at 28,390 to 29,160 _RS00120 HMPREF1078_RS00125: HMPREF1078_RS00125 - phosphoribosylanthranilate isomerase, at 29,183 to 29,848 _RS00125 HMPREF1078_RS00130: HMPREF1078_RS00130 - indole-3-glycerol phosphate synthase TrpC, at 29,845 to 30,654 _RS00130 Position (kb) 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 27.430 kb on + strand, within HMPREF1078_RS00115at 27.431 kb on - strand, within HMPREF1078_RS00115at 27.433 kb on - strand, within HMPREF1078_RS00115at 27.433 kb on - strand, within HMPREF1078_RS00115at 27.481 kb on + strand, within HMPREF1078_RS00115at 27.486 kb on - strand, within HMPREF1078_RS00115at 27.516 kb on + strand, within HMPREF1078_RS00115at 27.521 kb on + strand, within HMPREF1078_RS00115at 27.521 kb on + strand, within HMPREF1078_RS00115at 27.555 kb on + strand, within HMPREF1078_RS00115at 27.563 kb on + strand, within HMPREF1078_RS00115at 27.564 kb on - strand, within HMPREF1078_RS00115at 27.564 kb on - strand, within HMPREF1078_RS00115at 27.570 kb on + strand, within HMPREF1078_RS00115at 27.570 kb on + strand, within HMPREF1078_RS00115at 27.571 kb on - strand, within HMPREF1078_RS00115at 27.571 kb on - strand, within HMPREF1078_RS00115at 27.571 kb on - strand, within HMPREF1078_RS00115at 27.572 kb on + strand, within HMPREF1078_RS00115at 27.572 kb on + strand, within HMPREF1078_RS00115at 27.644 kb on + strand, within HMPREF1078_RS00115at 27.645 kb on - strand, within HMPREF1078_RS00115at 27.674 kb on + strand, within HMPREF1078_RS00115at 27.674 kb on + strand, within HMPREF1078_RS00115at 27.675 kb on - strand, within HMPREF1078_RS00115at 27.675 kb on - strand, within HMPREF1078_RS00115at 27.675 kb on - strand, within HMPREF1078_RS00115at 27.791 kb on - strand, within HMPREF1078_RS00115at 27.791 kb on - strand, within HMPREF1078_RS00115at 27.841 kb on + strand, within HMPREF1078_RS00115at 27.851 kb on - strand, within HMPREF1078_RS00115at 27.851 kb on - strand, within HMPREF1078_RS00115at 27.868 kb on - strand, within HMPREF1078_RS00115at 27.868 kb on - strand, within HMPREF1078_RS00115at 27.875 kb on + strand, within HMPREF1078_RS00115at 27.875 kb on + strand, within HMPREF1078_RS00115at 27.876 kb on - strand, within HMPREF1078_RS00115at 27.876 kb on - strand, within HMPREF1078_RS00115at 27.876 kb on - strand, within HMPREF1078_RS00115at 27.876 kb on - strand, within HMPREF1078_RS00115at 27.877 kb on + strand, within HMPREF1078_RS00115at 27.878 kb on - strand, within HMPREF1078_RS00115at 27.879 kb on + strand, within HMPREF1078_RS00115at 27.879 kb on + strand, within HMPREF1078_RS00115at 27.955 kb on - strand, within HMPREF1078_RS00115at 27.977 kb on - strandat 27.985 kb on + strandat 27.990 kb on + strandat 28.011 kb on + strandat 28.075 kb on - strandat 28.164 kb on - strandat 28.181 kb on - strandat 28.196 kb on + strandat 28.206 kb on + strandat 28.225 kb on - strandat 28.272 kb on + strandat 28.289 kb on - strandat 28.324 kb on - strandat 28.450 kb on + strandat 28.471 kb on + strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.472 kb on - strand, within HMPREF1078_RS00120at 28.492 kb on - strand, within HMPREF1078_RS00120at 28.494 kb on + strand, within HMPREF1078_RS00120at 28.498 kb on + strand, within HMPREF1078_RS00120at 28.499 kb on - strand, within HMPREF1078_RS00120at 28.499 kb on - strand, within HMPREF1078_RS00120at 28.640 kb on - strand, within HMPREF1078_RS00120at 28.646 kb on + strand, within HMPREF1078_RS00120at 28.647 kb on - strand, within HMPREF1078_RS00120at 28.662 kb on + strand, within HMPREF1078_RS00120at 28.662 kb on + strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.663 kb on - strand, within HMPREF1078_RS00120at 28.716 kb on + strand, within HMPREF1078_RS00120at 28.734 kb on - strand, within HMPREF1078_RS00120at 28.754 kb on + strand, within HMPREF1078_RS00120at 28.764 kb on + strand, within HMPREF1078_RS00120at 28.766 kb on + strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.767 kb on - strand, within HMPREF1078_RS00120at 28.804 kb on + strand, within HMPREF1078_RS00120at 28.848 kb on - strand, within HMPREF1078_RS00120at 28.909 kb on - strand, within HMPREF1078_RS00120at 28.915 kb on + strand, within HMPREF1078_RS00120at 29.027 kb on - strand, within HMPREF1078_RS00120at 29.035 kb on + strand, within HMPREF1078_RS00120at 29.035 kb on + strand, within HMPREF1078_RS00120at 29.035 kb on - strand, within HMPREF1078_RS00120at 29.036 kb on - strand, within HMPREF1078_RS00120at 29.050 kb on + strand, within HMPREF1078_RS00120at 29.059 kb on + strand, within HMPREF1078_RS00120at 29.059 kb on + strand, within HMPREF1078_RS00120at 29.223 kb on - strandat 29.231 kb on + strandat 29.232 kb on - strandat 29.309 kb on + strand, within HMPREF1078_RS00125at 29.309 kb on + strand, within HMPREF1078_RS00125at 29.310 kb on - strand, within HMPREF1078_RS00125at 29.416 kb on - strand, within HMPREF1078_RS00125at 29.419 kb on + strand, within HMPREF1078_RS00125at 29.420 kb on - strand, within HMPREF1078_RS00125at 29.662 kb on + strand, within HMPREF1078_RS00125at 29.720 kb on + strand, within HMPREF1078_RS00125at 29.720 kb on + strand, within HMPREF1078_RS00125at 29.734 kb on + strand, within HMPREF1078_RS00125at 29.738 kb on + strand, within HMPREF1078_RS00125at 29.739 kb on - strand, within HMPREF1078_RS00125at 29.766 kb on - strand, within HMPREF1078_RS00125at 29.775 kb on - strand, within HMPREF1078_RS00125at 29.851 kb on + strandat 29.852 kb on - strandat 29.861 kb on - strandat 29.887 kb on + strandat 29.887 kb on + strandat 29.990 kb on - strand, within HMPREF1078_RS00130at 30.003 kb on + strand, within HMPREF1078_RS00130at 30.067 kb on - strand, within HMPREF1078_RS00130at 30.090 kb on + strand, within HMPREF1078_RS00130at 30.106 kb on - strand, within HMPREF1078_RS00130

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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27,430 + HMPREF1078_RS00115 0.46 +1.5
27,431 - HMPREF1078_RS00115 0.46 +0.5
27,433 - HMPREF1078_RS00115 0.46 -1.2
27,433 - HMPREF1078_RS00115 0.46 +1.0
27,481 + HMPREF1078_RS00115 0.50 -0.4
27,486 - HMPREF1078_RS00115 0.50 +0.4
27,516 + HMPREF1078_RS00115 0.53 +2.4
27,521 + HMPREF1078_RS00115 0.53 -0.3
27,521 + HMPREF1078_RS00115 0.53 -2.1
27,555 + HMPREF1078_RS00115 0.56 +0.3
27,563 + HMPREF1078_RS00115 0.57 -1.1
27,564 - HMPREF1078_RS00115 0.57 +1.4
27,564 - HMPREF1078_RS00115 0.57 +0.3
27,570 + HMPREF1078_RS00115 0.57 -0.3
27,570 + HMPREF1078_RS00115 0.57 +0.1
27,571 - HMPREF1078_RS00115 0.57 -2.3
27,571 - HMPREF1078_RS00115 0.57 -0.8
27,571 - HMPREF1078_RS00115 0.57 -0.5
27,572 + HMPREF1078_RS00115 0.58 -0.2
27,572 + HMPREF1078_RS00115 0.58 -1.5
27,644 + HMPREF1078_RS00115 0.63 -1.5
27,645 - HMPREF1078_RS00115 0.64 +0.8
27,674 + HMPREF1078_RS00115 0.66 -0.2
27,674 + HMPREF1078_RS00115 0.66 +1.2
27,675 - HMPREF1078_RS00115 0.66 +2.6
27,675 - HMPREF1078_RS00115 0.66 -0.6
27,675 - HMPREF1078_RS00115 0.66 +0.9
27,791 - HMPREF1078_RS00115 0.76 +1.1
27,791 - HMPREF1078_RS00115 0.76 -0.4
27,841 + HMPREF1078_RS00115 0.80 +0.2
27,851 - HMPREF1078_RS00115 0.81 +0.4
27,851 - HMPREF1078_RS00115 0.81 +1.3
27,868 - HMPREF1078_RS00115 0.82 +0.2
27,868 - HMPREF1078_RS00115 0.82 -0.5
27,875 + HMPREF1078_RS00115 0.83 -1.2
27,875 + HMPREF1078_RS00115 0.83 -0.9
27,876 - HMPREF1078_RS00115 0.83 -1.7
27,876 - HMPREF1078_RS00115 0.83 -1.7
27,876 - HMPREF1078_RS00115 0.83 -1.8
27,876 - HMPREF1078_RS00115 0.83 -1.0
27,877 + HMPREF1078_RS00115 0.83 -0.2
27,878 - HMPREF1078_RS00115 0.83 +0.3
27,879 + HMPREF1078_RS00115 0.83 +0.7
27,879 + HMPREF1078_RS00115 0.83 -2.3
27,955 - HMPREF1078_RS00115 0.89 +0.5
27,977 - +1.4
27,985 + -0.5
27,990 + -1.8
28,011 + -1.3
28,075 - +0.2
28,164 - +0.3
28,181 - +0.6
28,196 + -1.5
28,206 + -2.2
28,225 - -0.9
28,272 + +1.2
28,289 - +1.2
28,324 - -1.7
28,450 + -0.7
28,471 + HMPREF1078_RS00120 0.11 -4.0
28,472 - HMPREF1078_RS00120 0.11 -2.0
28,472 - HMPREF1078_RS00120 0.11 -0.4
28,472 - HMPREF1078_RS00120 0.11 -3.7
28,492 - HMPREF1078_RS00120 0.13 -3.0
28,494 + HMPREF1078_RS00120 0.13 -3.6
28,498 + HMPREF1078_RS00120 0.14 -1.9
28,499 - HMPREF1078_RS00120 0.14 -2.9
28,499 - HMPREF1078_RS00120 0.14 -2.2
28,640 - HMPREF1078_RS00120 0.32 -0.8
28,646 + HMPREF1078_RS00120 0.33 +1.2
28,647 - HMPREF1078_RS00120 0.33 -0.2
28,662 + HMPREF1078_RS00120 0.35 -3.3
28,662 + HMPREF1078_RS00120 0.35 -1.0
28,663 - HMPREF1078_RS00120 0.35 -2.7
28,663 - HMPREF1078_RS00120 0.35 -3.9
28,663 - HMPREF1078_RS00120 0.35 -2.2
28,716 + HMPREF1078_RS00120 0.42 -1.9
28,734 - HMPREF1078_RS00120 0.45 -1.1
28,754 + HMPREF1078_RS00120 0.47 -2.0
28,764 + HMPREF1078_RS00120 0.49 -0.8
28,766 + HMPREF1078_RS00120 0.49 -2.1
28,767 - HMPREF1078_RS00120 0.49 -2.9
28,767 - HMPREF1078_RS00120 0.49 -1.5
28,767 - HMPREF1078_RS00120 0.49 -0.8
28,767 - HMPREF1078_RS00120 0.49 -0.9
28,767 - HMPREF1078_RS00120 0.49 -1.5
28,804 + HMPREF1078_RS00120 0.54 -3.4
28,848 - HMPREF1078_RS00120 0.59 -2.5
28,909 - HMPREF1078_RS00120 0.67 -2.1
28,915 + HMPREF1078_RS00120 0.68 -4.1
29,027 - HMPREF1078_RS00120 0.83 -2.0
29,035 + HMPREF1078_RS00120 0.84 -0.5
29,035 + HMPREF1078_RS00120 0.84 -1.0
29,035 - HMPREF1078_RS00120 0.84 -2.5
29,036 - HMPREF1078_RS00120 0.84 -0.0
29,050 + HMPREF1078_RS00120 0.86 -3.0
29,059 + HMPREF1078_RS00120 0.87 -1.4
29,059 + HMPREF1078_RS00120 0.87 -2.6
29,223 - +0.6
29,231 + -2.1
29,232 - -1.6
29,309 + HMPREF1078_RS00125 0.19 -0.5
29,309 + HMPREF1078_RS00125 0.19 -1.5
29,310 - HMPREF1078_RS00125 0.19 -3.4
29,416 - HMPREF1078_RS00125 0.35 -4.0
29,419 + HMPREF1078_RS00125 0.35 -0.4
29,420 - HMPREF1078_RS00125 0.36 -3.3
29,662 + HMPREF1078_RS00125 0.72 -3.4
29,720 + HMPREF1078_RS00125 0.81 -1.6
29,720 + HMPREF1078_RS00125 0.81 -2.4
29,734 + HMPREF1078_RS00125 0.83 -0.2
29,738 + HMPREF1078_RS00125 0.83 -3.7
29,739 - HMPREF1078_RS00125 0.83 -3.3
29,766 - HMPREF1078_RS00125 0.88 -2.5
29,775 - HMPREF1078_RS00125 0.89 -3.7
29,851 + -2.9
29,852 - +0.2
29,861 - -0.8
29,887 + -0.3
29,887 + -2.4
29,990 - HMPREF1078_RS00130 0.18 -2.2
30,003 + HMPREF1078_RS00130 0.20 -2.8
30,067 - HMPREF1078_RS00130 0.27 -1.7
30,090 + HMPREF1078_RS00130 0.30 -2.8
30,106 - HMPREF1078_RS00130 0.32 -2.4

Or see this region's nucleotide sequence