Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09725 and HMPREF1078_RS09730 are separated by 277 nucleotides HMPREF1078_RS09730 and HMPREF1078_RS09735 are separated by 297 nucleotides HMPREF1078_RS09735 and HMPREF1078_RS09740 are separated by 66 nucleotides HMPREF1078_RS09740 and HMPREF1078_RS09745 are separated by 107 nucleotides
HMPREF1078_RS09725: HMPREF1078_RS09725 - nickel-responsive transcriptional regulator NikR, at 543,251 to 543,652
_RS09725
HMPREF1078_RS09730: HMPREF1078_RS09730 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 543,930 to 544,175
_RS09730
HMPREF1078_RS09735: HMPREF1078_RS09735 - DMT family transporter, at 544,473 to 545,417
_RS09735
HMPREF1078_RS09740: HMPREF1078_RS09740 - hypothetical protein, at 545,484 to 545,732
_RS09740
HMPREF1078_RS09745: HMPREF1078_RS09745 - phenylalanine--tRNA ligase subunit alpha, at 545,840 to 546,859
_RS09745
Position (kb) 544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.475 kb on + strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.476 kb on - strand, within HMPREF1078_RS09725 at 543.499 kb on + strand, within HMPREF1078_RS09725 at 543.499 kb on + strand, within HMPREF1078_RS09725 at 543.505 kb on + strand, within HMPREF1078_RS09725 at 543.505 kb on + strand, within HMPREF1078_RS09725 at 543.591 kb on + strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.592 kb on - strand, within HMPREF1078_RS09725 at 543.713 kb on + strand at 543.713 kb on + strand at 543.729 kb on - strand at 543.753 kb on + strand at 543.785 kb on + strand at 543.785 kb on + strand at 543.786 kb on - strand at 543.847 kb on - strand at 543.847 kb on - strand at 543.849 kb on - strand at 543.849 kb on - strand at 543.852 kb on + strand at 543.888 kb on + strand at 543.889 kb on - strand at 543.889 kb on - strand at 543.982 kb on + strand, within HMPREF1078_RS09730 at 543.983 kb on - strand, within HMPREF1078_RS09730 at 544.030 kb on + strand, within HMPREF1078_RS09730 at 544.030 kb on + strand, within HMPREF1078_RS09730 at 544.031 kb on - strand, within HMPREF1078_RS09730 at 544.057 kb on + strand, within HMPREF1078_RS09730 at 544.063 kb on + strand, within HMPREF1078_RS09730 at 544.064 kb on - strand, within HMPREF1078_RS09730 at 544.174 kb on - strand at 544.251 kb on + strand at 544.260 kb on - strand at 544.290 kb on + strand at 544.291 kb on - strand at 544.291 kb on - strand at 544.326 kb on - strand at 544.331 kb on - strand at 544.436 kb on - strand at 544.436 kb on - strand at 544.436 kb on - strand at 544.440 kb on - strand at 544.558 kb on - strand at 544.599 kb on + strand, within HMPREF1078_RS09735 at 544.634 kb on + strand, within HMPREF1078_RS09735 at 544.667 kb on + strand, within HMPREF1078_RS09735 at 544.743 kb on + strand, within HMPREF1078_RS09735 at 544.744 kb on - strand, within HMPREF1078_RS09735 at 544.745 kb on + strand, within HMPREF1078_RS09735 at 544.745 kb on + strand, within HMPREF1078_RS09735 at 544.767 kb on - strand, within HMPREF1078_RS09735 at 544.817 kb on - strand, within HMPREF1078_RS09735 at 544.817 kb on - strand, within HMPREF1078_RS09735 at 544.867 kb on + strand, within HMPREF1078_RS09735 at 544.868 kb on - strand, within HMPREF1078_RS09735 at 544.965 kb on + strand, within HMPREF1078_RS09735 at 544.970 kb on - strand, within HMPREF1078_RS09735 at 544.972 kb on + strand, within HMPREF1078_RS09735 at 544.973 kb on - strand, within HMPREF1078_RS09735 at 545.029 kb on + strand, within HMPREF1078_RS09735 at 545.030 kb on + strand, within HMPREF1078_RS09735 at 545.044 kb on + strand, within HMPREF1078_RS09735 at 545.051 kb on - strand, within HMPREF1078_RS09735 at 545.086 kb on - strand, within HMPREF1078_RS09735 at 545.086 kb on - strand, within HMPREF1078_RS09735 at 545.086 kb on - strand, within HMPREF1078_RS09735 at 545.087 kb on + strand, within HMPREF1078_RS09735 at 545.169 kb on - strand, within HMPREF1078_RS09735 at 545.183 kb on + strand, within HMPREF1078_RS09735 at 545.206 kb on + strand, within HMPREF1078_RS09735 at 545.218 kb on + strand, within HMPREF1078_RS09735 at 545.296 kb on + strand, within HMPREF1078_RS09735 at 545.300 kb on - strand, within HMPREF1078_RS09735 at 545.304 kb on - strand, within HMPREF1078_RS09735 at 545.363 kb on + strand at 545.459 kb on + strand at 545.532 kb on + strand, within HMPREF1078_RS09740 at 545.533 kb on - strand, within HMPREF1078_RS09740 at 545.533 kb on - strand, within HMPREF1078_RS09740 at 545.534 kb on + strand, within HMPREF1078_RS09740 at 545.554 kb on + strand, within HMPREF1078_RS09740 at 545.555 kb on - strand, within HMPREF1078_RS09740 at 545.632 kb on - strand, within HMPREF1078_RS09740 at 545.632 kb on - strand, within HMPREF1078_RS09740 at 545.704 kb on + strand, within HMPREF1078_RS09740 at 545.704 kb on + strand, within HMPREF1078_RS09740 at 545.722 kb on - strand at 545.722 kb on - strand at 545.744 kb on + strand at 545.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 543,475 + HMPREF1078_RS09725 0.56 +0.3 543,475 + HMPREF1078_RS09725 0.56 -1.5 543,475 + HMPREF1078_RS09725 0.56 -0.6 543,476 - HMPREF1078_RS09725 0.56 +0.7 543,476 - HMPREF1078_RS09725 0.56 -0.8 543,476 - HMPREF1078_RS09725 0.56 +0.8 543,499 + HMPREF1078_RS09725 0.62 +0.3 543,499 + HMPREF1078_RS09725 0.62 -0.3 543,505 + HMPREF1078_RS09725 0.63 -0.5 543,505 + HMPREF1078_RS09725 0.63 -1.4 543,591 + HMPREF1078_RS09725 0.85 +0.9 543,592 - HMPREF1078_RS09725 0.85 -0.3 543,592 - HMPREF1078_RS09725 0.85 -1.9 543,592 - HMPREF1078_RS09725 0.85 +0.3 543,713 + +0.3 543,713 + -1.0 543,729 - +0.5 543,753 + +0.8 543,785 + +0.9 543,785 + +0.5 543,786 - +0.5 543,847 - +0.5 543,847 - -0.6 543,849 - +1.5 543,849 - -1.7 543,852 + -1.1 543,888 + -0.6 543,889 - +2.1 543,889 - +0.7 543,982 + HMPREF1078_RS09730 0.21 -0.3 543,983 - HMPREF1078_RS09730 0.22 +0.2 544,030 + HMPREF1078_RS09730 0.41 -0.7 544,030 + HMPREF1078_RS09730 0.41 +2.1 544,031 - HMPREF1078_RS09730 0.41 -0.4 544,057 + HMPREF1078_RS09730 0.52 +1.8 544,063 + HMPREF1078_RS09730 0.54 +0.7 544,064 - HMPREF1078_RS09730 0.54 +0.3 544,174 - +0.4 544,251 + +0.7 544,260 - -0.3 544,290 + -1.6 544,291 - -1.3 544,291 - +0.9 544,326 - +0.2 544,331 - -1.4 544,436 - +0.6 544,436 - +0.2 544,436 - -0.6 544,440 - -1.1 544,558 - +0.1 544,599 + HMPREF1078_RS09735 0.13 +0.3 544,634 + HMPREF1078_RS09735 0.17 -0.8 544,667 + HMPREF1078_RS09735 0.21 -0.0 544,743 + HMPREF1078_RS09735 0.29 -0.0 544,744 - HMPREF1078_RS09735 0.29 +0.7 544,745 + HMPREF1078_RS09735 0.29 -0.3 544,745 + HMPREF1078_RS09735 0.29 -0.2 544,767 - HMPREF1078_RS09735 0.31 +0.6 544,817 - HMPREF1078_RS09735 0.36 +0.8 544,817 - HMPREF1078_RS09735 0.36 -1.4 544,867 + HMPREF1078_RS09735 0.42 -1.3 544,868 - HMPREF1078_RS09735 0.42 -0.5 544,965 + HMPREF1078_RS09735 0.52 +0.3 544,970 - HMPREF1078_RS09735 0.53 -1.0 544,972 + HMPREF1078_RS09735 0.53 -1.7 544,973 - HMPREF1078_RS09735 0.53 +0.9 545,029 + HMPREF1078_RS09735 0.59 +0.7 545,030 + HMPREF1078_RS09735 0.59 -0.2 545,044 + HMPREF1078_RS09735 0.60 -1.3 545,051 - HMPREF1078_RS09735 0.61 -2.2 545,086 - HMPREF1078_RS09735 0.65 -0.7 545,086 - HMPREF1078_RS09735 0.65 -0.0 545,086 - HMPREF1078_RS09735 0.65 -3.3 545,087 + HMPREF1078_RS09735 0.65 -0.7 545,169 - HMPREF1078_RS09735 0.74 -0.6 545,183 + HMPREF1078_RS09735 0.75 +0.1 545,206 + HMPREF1078_RS09735 0.78 +0.5 545,218 + HMPREF1078_RS09735 0.79 -1.3 545,296 + HMPREF1078_RS09735 0.87 -0.7 545,300 - HMPREF1078_RS09735 0.88 -0.3 545,304 - HMPREF1078_RS09735 0.88 -0.6 545,363 + +0.0 545,459 + +0.5 545,532 + HMPREF1078_RS09740 0.19 -0.6 545,533 - HMPREF1078_RS09740 0.20 -0.8 545,533 - HMPREF1078_RS09740 0.20 +0.3 545,534 + HMPREF1078_RS09740 0.20 +0.4 545,554 + HMPREF1078_RS09740 0.28 +0.1 545,555 - HMPREF1078_RS09740 0.29 +1.7 545,632 - HMPREF1078_RS09740 0.59 +0.7 545,632 - HMPREF1078_RS09740 0.59 -0.5 545,704 + HMPREF1078_RS09740 0.88 -0.3 545,704 + HMPREF1078_RS09740 0.88 -1.0 545,722 - +0.0 545,722 - -0.7 545,744 + -1.0 545,745 - -0.7
Or see this region's nucleotide sequence