Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05090 and HMPREF1078_RS05095 are separated by 5 nucleotides HMPREF1078_RS05095 and HMPREF1078_RS05100 are separated by 125 nucleotides HMPREF1078_RS05100 and HMPREF1078_RS05105 are separated by 453 nucleotides
HMPREF1078_RS05090: HMPREF1078_RS05090 - AAA family ATPase, at 279,702 to 280,775
_RS05090
HMPREF1078_RS05095: HMPREF1078_RS05095 - helix-turn-helix domain-containing protein, at 280,781 to 281,068
_RS05095
HMPREF1078_RS05100: HMPREF1078_RS05100 - hypothetical protein, at 281,194 to 282,102
_RS05100
HMPREF1078_RS05105: HMPREF1078_RS05105 - site-specific integrase, at 282,556 to 283,893
_RS05105
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.313 kb on + strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.328 kb on - strand, within HMPREF1078_RS05090 at 280.330 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.431 kb on - strand, within HMPREF1078_RS05090 at 280.446 kb on - strand, within HMPREF1078_RS05090 at 280.456 kb on + strand, within HMPREF1078_RS05090 at 280.472 kb on + strand, within HMPREF1078_RS05090 at 280.634 kb on + strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.673 kb on - strand at 280.739 kb on + strand at 280.783 kb on - strand at 280.809 kb on + strand at 280.809 kb on + strand at 280.810 kb on - strand, within HMPREF1078_RS05095 at 280.950 kb on + strand, within HMPREF1078_RS05095 at 280.950 kb on + strand, within HMPREF1078_RS05095 at 280.999 kb on + strand, within HMPREF1078_RS05095 at 281.095 kb on + strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.161 kb on + strand at 281.162 kb on - strand at 281.189 kb on + strand at 281.190 kb on - strand at 281.219 kb on + strand at 281.250 kb on - strand at 281.323 kb on + strand, within HMPREF1078_RS05100 at 281.361 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.373 kb on + strand, within HMPREF1078_RS05100 at 281.374 kb on - strand, within HMPREF1078_RS05100 at 281.374 kb on - strand, within HMPREF1078_RS05100 at 281.375 kb on + strand, within HMPREF1078_RS05100 at 281.396 kb on - strand, within HMPREF1078_RS05100 at 281.396 kb on - strand, within HMPREF1078_RS05100 at 281.422 kb on - strand, within HMPREF1078_RS05100 at 281.484 kb on + strand, within HMPREF1078_RS05100 at 281.487 kb on + strand, within HMPREF1078_RS05100 at 281.488 kb on - strand, within HMPREF1078_RS05100 at 281.600 kb on - strand, within HMPREF1078_RS05100 at 281.656 kb on - strand, within HMPREF1078_RS05100 at 281.658 kb on - strand, within HMPREF1078_RS05100 at 281.658 kb on - strand, within HMPREF1078_RS05100 at 281.660 kb on + strand, within HMPREF1078_RS05100 at 281.704 kb on + strand, within HMPREF1078_RS05100 at 281.750 kb on + strand, within HMPREF1078_RS05100 at 281.750 kb on + strand, within HMPREF1078_RS05100 at 281.751 kb on - strand, within HMPREF1078_RS05100 at 281.781 kb on + strand, within HMPREF1078_RS05100 at 281.887 kb on + strand, within HMPREF1078_RS05100 at 281.909 kb on + strand, within HMPREF1078_RS05100 at 281.927 kb on - strand, within HMPREF1078_RS05100 at 281.932 kb on - strand, within HMPREF1078_RS05100 at 281.932 kb on - strand, within HMPREF1078_RS05100 at 281.994 kb on - strand, within HMPREF1078_RS05100 at 282.052 kb on - strand at 282.055 kb on + strand at 282.056 kb on - strand at 282.056 kb on - strand at 282.056 kb on - strand at 282.056 kb on - strand at 282.059 kb on - strand at 282.089 kb on - strand at 282.109 kb on - strand at 282.133 kb on - strand at 282.139 kb on - strand at 282.141 kb on - strand at 282.200 kb on + strand at 282.246 kb on + strand at 282.246 kb on + strand at 282.254 kb on - strand at 282.254 kb on - strand at 282.283 kb on + strand at 282.284 kb on - strand at 282.284 kb on - strand at 282.284 kb on - strand at 282.296 kb on - strand at 282.519 kb on + strand at 282.556 kb on - strand at 282.556 kb on - strand at 282.570 kb on + strand at 282.571 kb on - strand at 282.595 kb on + strand at 282.596 kb on - strand at 282.601 kb on - strand at 282.601 kb on - strand at 282.615 kb on + strand at 282.616 kb on - strand at 282.616 kb on - strand at 282.621 kb on - strand at 282.622 kb on + strand at 282.666 kb on + strand at 282.692 kb on + strand, within HMPREF1078_RS05105 at 282.693 kb on - strand, within HMPREF1078_RS05105 at 282.702 kb on + strand, within HMPREF1078_RS05105 at 282.703 kb on - strand, within HMPREF1078_RS05105 at 282.750 kb on + strand, within HMPREF1078_RS05105 at 282.787 kb on + strand, within HMPREF1078_RS05105 at 282.788 kb on - strand, within HMPREF1078_RS05105 at 282.788 kb on - strand, within HMPREF1078_RS05105 at 282.788 kb on - strand, within HMPREF1078_RS05105 at 282.800 kb on + strand, within HMPREF1078_RS05105 at 282.801 kb on - strand, within HMPREF1078_RS05105 at 282.801 kb on - strand, within HMPREF1078_RS05105 at 282.801 kb on - strand, within HMPREF1078_RS05105 at 282.802 kb on + strand, within HMPREF1078_RS05105 at 282.802 kb on + strand, within HMPREF1078_RS05105 at 282.802 kb on + strand, within HMPREF1078_RS05105 at 282.802 kb on + strand, within HMPREF1078_RS05105 at 282.803 kb on - strand, within HMPREF1078_RS05105 at 282.803 kb on - strand, within HMPREF1078_RS05105 at 282.803 kb on - strand, within HMPREF1078_RS05105 at 282.824 kb on + strand, within HMPREF1078_RS05105 at 282.862 kb on + strand, within HMPREF1078_RS05105 at 282.909 kb on + strand, within HMPREF1078_RS05105 at 282.924 kb on - strand, within HMPREF1078_RS05105 at 282.927 kb on - strand, within HMPREF1078_RS05105 at 282.962 kb on + strand, within HMPREF1078_RS05105 at 282.999 kb on - strand, within HMPREF1078_RS05105 at 283.012 kb on + strand, within HMPREF1078_RS05105 at 283.013 kb on + strand, within HMPREF1078_RS05105 at 283.014 kb on - strand, within HMPREF1078_RS05105 at 283.014 kb on - strand, within HMPREF1078_RS05105 at 283.015 kb on + strand, within HMPREF1078_RS05105 at 283.015 kb on + strand, within HMPREF1078_RS05105 at 283.016 kb on - strand, within HMPREF1078_RS05105 at 283.016 kb on - strand, within HMPREF1078_RS05105 at 283.016 kb on - strand, within HMPREF1078_RS05105 at 283.019 kb on + strand, within HMPREF1078_RS05105 at 283.019 kb on + strand, within HMPREF1078_RS05105 at 283.019 kb on + strand, within HMPREF1078_RS05105 at 283.019 kb on + strand, within HMPREF1078_RS05105 at 283.020 kb on - strand, within HMPREF1078_RS05105 at 283.020 kb on - strand, within HMPREF1078_RS05105 at 283.020 kb on - strand, within HMPREF1078_RS05105 at 283.020 kb on - strand, within HMPREF1078_RS05105 at 283.020 kb on - strand, within HMPREF1078_RS05105 at 283.022 kb on - strand, within HMPREF1078_RS05105 at 283.093 kb on - strand, within HMPREF1078_RS05105 at 283.093 kb on - strand, within HMPREF1078_RS05105
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 280,197 - HMPREF1078_RS05090 0.46 -0.9 280,197 - HMPREF1078_RS05090 0.46 -1.0 280,199 - HMPREF1078_RS05090 0.46 -0.1 280,199 - HMPREF1078_RS05090 0.46 -1.2 280,230 + HMPREF1078_RS05090 0.49 +1.3 280,230 + HMPREF1078_RS05090 0.49 +1.1 280,313 + HMPREF1078_RS05090 0.57 -0.7 280,314 - HMPREF1078_RS05090 0.57 -0.8 280,314 - HMPREF1078_RS05090 0.57 -0.8 280,325 + HMPREF1078_RS05090 0.58 +0.0 280,325 + HMPREF1078_RS05090 0.58 +0.1 280,325 + HMPREF1078_RS05090 0.58 -0.1 280,325 + HMPREF1078_RS05090 0.58 -1.5 280,326 - HMPREF1078_RS05090 0.58 +0.0 280,326 - HMPREF1078_RS05090 0.58 -0.3 280,326 - HMPREF1078_RS05090 0.58 +0.1 280,326 - HMPREF1078_RS05090 0.58 +0.7 280,326 - HMPREF1078_RS05090 0.58 +0.6 280,328 - HMPREF1078_RS05090 0.58 -0.2 280,330 + HMPREF1078_RS05090 0.58 +0.2 280,335 + HMPREF1078_RS05090 0.59 +1.7 280,335 + HMPREF1078_RS05090 0.59 +0.4 280,336 - HMPREF1078_RS05090 0.59 -1.5 280,336 - HMPREF1078_RS05090 0.59 -0.6 280,336 - HMPREF1078_RS05090 0.59 +0.1 280,431 - HMPREF1078_RS05090 0.68 -0.2 280,446 - HMPREF1078_RS05090 0.69 -0.9 280,456 + HMPREF1078_RS05090 0.70 -0.6 280,472 + HMPREF1078_RS05090 0.72 -1.2 280,634 + HMPREF1078_RS05090 0.87 -0.1 280,635 - HMPREF1078_RS05090 0.87 +0.8 280,635 - HMPREF1078_RS05090 0.87 -0.6 280,635 - HMPREF1078_RS05090 0.87 -0.6 280,635 - HMPREF1078_RS05090 0.87 +0.2 280,635 - HMPREF1078_RS05090 0.87 +0.2 280,673 - +0.3 280,739 + -0.9 280,783 - +0.3 280,809 + -2.5 280,809 + -0.6 280,810 - HMPREF1078_RS05095 0.10 -0.3 280,950 + HMPREF1078_RS05095 0.59 -0.1 280,950 + HMPREF1078_RS05095 0.59 -0.6 280,999 + HMPREF1078_RS05095 0.76 -1.3 281,095 + -0.2 281,096 - -0.4 281,096 - -2.0 281,096 - -0.4 281,096 - -0.3 281,096 - -1.3 281,161 + +0.2 281,162 - -1.2 281,189 + -0.2 281,190 - -1.9 281,219 + -0.2 281,250 - +0.7 281,323 + HMPREF1078_RS05100 0.14 +1.1 281,361 - HMPREF1078_RS05100 0.18 -0.8 281,370 - HMPREF1078_RS05100 0.19 +0.3 281,370 - HMPREF1078_RS05100 0.19 +1.4 281,370 - HMPREF1078_RS05100 0.19 -0.1 281,373 + HMPREF1078_RS05100 0.20 -0.4 281,374 - HMPREF1078_RS05100 0.20 -0.0 281,374 - HMPREF1078_RS05100 0.20 -1.6 281,375 + HMPREF1078_RS05100 0.20 +0.4 281,396 - HMPREF1078_RS05100 0.22 -0.4 281,396 - HMPREF1078_RS05100 0.22 -0.3 281,422 - HMPREF1078_RS05100 0.25 -1.7 281,484 + HMPREF1078_RS05100 0.32 +0.4 281,487 + HMPREF1078_RS05100 0.32 -0.2 281,488 - HMPREF1078_RS05100 0.32 -1.2 281,600 - HMPREF1078_RS05100 0.45 -0.2 281,656 - HMPREF1078_RS05100 0.51 -0.5 281,658 - HMPREF1078_RS05100 0.51 +0.7 281,658 - HMPREF1078_RS05100 0.51 +0.8 281,660 + HMPREF1078_RS05100 0.51 +1.1 281,704 + HMPREF1078_RS05100 0.56 -0.3 281,750 + HMPREF1078_RS05100 0.61 +0.7 281,750 + HMPREF1078_RS05100 0.61 -0.8 281,751 - HMPREF1078_RS05100 0.61 -0.0 281,781 + HMPREF1078_RS05100 0.65 -1.3 281,887 + HMPREF1078_RS05100 0.76 +1.0 281,909 + HMPREF1078_RS05100 0.79 -0.1 281,927 - HMPREF1078_RS05100 0.81 +1.2 281,932 - HMPREF1078_RS05100 0.81 -2.3 281,932 - HMPREF1078_RS05100 0.81 -0.3 281,994 - HMPREF1078_RS05100 0.88 -1.3 282,052 - +0.0 282,055 + -0.3 282,056 - -0.2 282,056 - -1.3 282,056 - -0.5 282,056 - +0.2 282,059 - -0.0 282,089 - -1.0 282,109 - +1.5 282,133 - -1.0 282,139 - -0.6 282,141 - -0.4 282,200 + +1.5 282,246 + +0.7 282,246 + +0.8 282,254 - -0.4 282,254 - -0.4 282,283 + +1.1 282,284 - +0.3 282,284 - -0.1 282,284 - -1.8 282,296 - -0.4 282,519 + -0.6 282,556 - +0.2 282,556 - -0.4 282,570 + +0.2 282,571 - -0.4 282,595 + -0.7 282,596 - -2.9 282,601 - -0.6 282,601 - -0.9 282,615 + -0.8 282,616 - +0.3 282,616 - -0.0 282,621 - -1.6 282,622 + +0.5 282,666 + +0.2 282,692 + HMPREF1078_RS05105 0.10 -0.2 282,693 - HMPREF1078_RS05105 0.10 +0.1 282,702 + HMPREF1078_RS05105 0.11 -0.6 282,703 - HMPREF1078_RS05105 0.11 -1.7 282,750 + HMPREF1078_RS05105 0.14 +0.3 282,787 + HMPREF1078_RS05105 0.17 -0.1 282,788 - HMPREF1078_RS05105 0.17 -0.9 282,788 - HMPREF1078_RS05105 0.17 -0.1 282,788 - HMPREF1078_RS05105 0.17 +1.5 282,800 + HMPREF1078_RS05105 0.18 -0.4 282,801 - HMPREF1078_RS05105 0.18 +0.5 282,801 - HMPREF1078_RS05105 0.18 +0.5 282,801 - HMPREF1078_RS05105 0.18 +1.0 282,802 + HMPREF1078_RS05105 0.18 -2.0 282,802 + HMPREF1078_RS05105 0.18 -3.3 282,802 + HMPREF1078_RS05105 0.18 -0.7 282,802 + HMPREF1078_RS05105 0.18 -0.4 282,803 - HMPREF1078_RS05105 0.18 +0.1 282,803 - HMPREF1078_RS05105 0.18 +0.2 282,803 - HMPREF1078_RS05105 0.18 +0.3 282,824 + HMPREF1078_RS05105 0.20 -1.3 282,862 + HMPREF1078_RS05105 0.23 +0.0 282,909 + HMPREF1078_RS05105 0.26 -0.0 282,924 - HMPREF1078_RS05105 0.28 +0.1 282,927 - HMPREF1078_RS05105 0.28 -0.5 282,962 + HMPREF1078_RS05105 0.30 -0.1 282,999 - HMPREF1078_RS05105 0.33 +0.2 283,012 + HMPREF1078_RS05105 0.34 -0.7 283,013 + HMPREF1078_RS05105 0.34 -0.0 283,014 - HMPREF1078_RS05105 0.34 +0.2 283,014 - HMPREF1078_RS05105 0.34 -1.0 283,015 + HMPREF1078_RS05105 0.34 +0.4 283,015 + HMPREF1078_RS05105 0.34 +0.1 283,016 - HMPREF1078_RS05105 0.34 +0.2 283,016 - HMPREF1078_RS05105 0.34 +2.2 283,016 - HMPREF1078_RS05105 0.34 +0.1 283,019 + HMPREF1078_RS05105 0.35 -0.3 283,019 + HMPREF1078_RS05105 0.35 -0.6 283,019 + HMPREF1078_RS05105 0.35 -0.0 283,019 + HMPREF1078_RS05105 0.35 -0.1 283,020 - HMPREF1078_RS05105 0.35 -0.8 283,020 - HMPREF1078_RS05105 0.35 -0.7 283,020 - HMPREF1078_RS05105 0.35 +0.7 283,020 - HMPREF1078_RS05105 0.35 -0.5 283,020 - HMPREF1078_RS05105 0.35 -0.6 283,022 - HMPREF1078_RS05105 0.35 +0.2 283,093 - HMPREF1078_RS05105 0.40 -0.1 283,093 - HMPREF1078_RS05105 0.40 -1.1
Or see this region's nucleotide sequence