Experiment: Columbia 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08915 and HMPREF1078_RS08920 are separated by 201 nucleotides HMPREF1078_RS08920 and HMPREF1078_RS08925 are separated by 3 nucleotides HMPREF1078_RS08925 and HMPREF1078_RS08930 are separated by 20 nucleotides HMPREF1078_RS08930 and HMPREF1078_RS08935 are separated by 60 nucleotides
HMPREF1078_RS08915: HMPREF1078_RS08915 - helix-turn-helix domain-containing protein, at 374,867 to 375,166
_RS08915
HMPREF1078_RS08920: HMPREF1078_RS08920 - helix-turn-helix domain-containing protein, at 375,368 to 375,730
_RS08920
HMPREF1078_RS08925: HMPREF1078_RS08925 - helix-turn-helix domain-containing protein, at 375,734 to 376,084
_RS08925
HMPREF1078_RS08930: HMPREF1078_RS08930 - DUF3945 domain-containing protein, at 376,105 to 377,676
_RS08930
HMPREF1078_RS08935: HMPREF1078_RS08935 - type IA DNA topoisomerase, at 377,737 to 379,824
_RS08935
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 375.150 kb on - strand at 375.153 kb on - strand at 375.153 kb on - strand at 375.214 kb on - strand at 375.286 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.438 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.646 kb on - strand, within HMPREF1078_RS08920 at 375.729 kb on - strand at 375.729 kb on - strand at 375.975 kb on - strand, within HMPREF1078_RS08925 at 376.016 kb on - strand, within HMPREF1078_RS08925 at 376.040 kb on - strand, within HMPREF1078_RS08925 at 376.050 kb on - strand at 376.050 kb on - strand at 376.365 kb on - strand, within HMPREF1078_RS08930 at 376.685 kb on - strand, within HMPREF1078_RS08930 at 377.363 kb on - strand, within HMPREF1078_RS08930 at 377.429 kb on - strand, within HMPREF1078_RS08930 at 377.704 kb on - strand at 377.818 kb on + strand at 377.818 kb on + strand at 378.048 kb on + strand, within HMPREF1078_RS08935 at 378.048 kb on + strand, within HMPREF1078_RS08935 at 378.109 kb on + strand, within HMPREF1078_RS08935 at 378.208 kb on + strand, within HMPREF1078_RS08935 at 378.221 kb on - strand, within HMPREF1078_RS08935 at 378.350 kb on + strand, within HMPREF1078_RS08935 at 378.350 kb on + strand, within HMPREF1078_RS08935 at 378.351 kb on - strand, within HMPREF1078_RS08935 at 378.491 kb on + strand, within HMPREF1078_RS08935 at 378.493 kb on + strand, within HMPREF1078_RS08935 at 378.494 kb on - strand, within HMPREF1078_RS08935 at 378.504 kb on - strand, within HMPREF1078_RS08935 at 378.574 kb on + strand, within HMPREF1078_RS08935 at 378.675 kb on - strand, within HMPREF1078_RS08935 at 378.676 kb on + strand, within HMPREF1078_RS08935
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) remove 375,150 - -0.1 375,153 - +0.7 375,153 - -1.0 375,214 - -1.8 375,286 - -0.5 375,299 - -0.2 375,299 - +0.8 375,299 - -0.1 375,438 - HMPREF1078_RS08920 0.19 +0.6 375,646 - HMPREF1078_RS08920 0.77 -0.5 375,646 - HMPREF1078_RS08920 0.77 +0.2 375,729 - -0.5 375,729 - -1.3 375,975 - HMPREF1078_RS08925 0.69 -0.1 376,016 - HMPREF1078_RS08925 0.80 -0.1 376,040 - HMPREF1078_RS08925 0.87 -0.7 376,050 - -0.4 376,050 - +0.4 376,365 - HMPREF1078_RS08930 0.17 -1.5 376,685 - HMPREF1078_RS08930 0.37 -0.1 377,363 - HMPREF1078_RS08930 0.80 -1.2 377,429 - HMPREF1078_RS08930 0.84 -0.9 377,704 - -0.5 377,818 + -0.3 377,818 + +0.1 378,048 + HMPREF1078_RS08935 0.15 +0.7 378,048 + HMPREF1078_RS08935 0.15 -1.8 378,109 + HMPREF1078_RS08935 0.18 +1.9 378,208 + HMPREF1078_RS08935 0.23 -0.7 378,221 - HMPREF1078_RS08935 0.23 -0.2 378,350 + HMPREF1078_RS08935 0.29 +0.4 378,350 + HMPREF1078_RS08935 0.29 -1.0 378,351 - HMPREF1078_RS08935 0.29 +2.1 378,491 + HMPREF1078_RS08935 0.36 -0.2 378,493 + HMPREF1078_RS08935 0.36 -0.0 378,494 - HMPREF1078_RS08935 0.36 -0.6 378,504 - HMPREF1078_RS08935 0.37 +0.1 378,574 + HMPREF1078_RS08935 0.40 +1.3 378,675 - HMPREF1078_RS08935 0.45 -1.3 378,676 + HMPREF1078_RS08935 0.45 -1.6
Or see this region's nucleotide sequence