Experiment: Columbia 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06310 and HMPREF1078_RS06315 are separated by 4 nucleotides HMPREF1078_RS06315 and HMPREF1078_RS06320 are separated by 6 nucleotides HMPREF1078_RS06320 and HMPREF1078_RS06325 are separated by 4 nucleotides
HMPREF1078_RS06310: HMPREF1078_RS06310 - excinuclease ABC subunit UvrC, at 623,520 to 625,325
_RS06310
HMPREF1078_RS06315: HMPREF1078_RS06315 - D-aminoacyl-tRNA deacylase, at 625,330 to 625,782
_RS06315
HMPREF1078_RS06320: HMPREF1078_RS06320 - nucleotide pyrophosphohydrolase, at 625,789 to 626,121
_RS06320
HMPREF1078_RS06325: HMPREF1078_RS06325 - deoxyribose-phosphate aldolase, at 626,126 to 627,061
_RS06325
Position (kb) 625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.331 kb on - strand, within HMPREF1078_RS06310 at 624.339 kb on + strand, within HMPREF1078_RS06310 at 624.347 kb on + strand, within HMPREF1078_RS06310 at 624.376 kb on - strand, within HMPREF1078_RS06310 at 624.378 kb on - strand, within HMPREF1078_RS06310 at 624.389 kb on + strand, within HMPREF1078_RS06310 at 624.389 kb on + strand, within HMPREF1078_RS06310 at 624.390 kb on - strand, within HMPREF1078_RS06310 at 624.390 kb on - strand, within HMPREF1078_RS06310 at 624.390 kb on - strand, within HMPREF1078_RS06310 at 624.458 kb on + strand, within HMPREF1078_RS06310 at 624.459 kb on - strand, within HMPREF1078_RS06310 at 624.502 kb on + strand, within HMPREF1078_RS06310 at 624.502 kb on + strand, within HMPREF1078_RS06310 at 624.503 kb on - strand, within HMPREF1078_RS06310 at 624.503 kb on - strand, within HMPREF1078_RS06310 at 624.503 kb on - strand, within HMPREF1078_RS06310 at 624.588 kb on + strand, within HMPREF1078_RS06310 at 624.589 kb on - strand, within HMPREF1078_RS06310 at 624.590 kb on + strand, within HMPREF1078_RS06310 at 624.591 kb on - strand, within HMPREF1078_RS06310 at 624.661 kb on + strand, within HMPREF1078_RS06310 at 624.661 kb on + strand, within HMPREF1078_RS06310 at 624.662 kb on - strand, within HMPREF1078_RS06310 at 624.662 kb on - strand, within HMPREF1078_RS06310 at 624.689 kb on - strand, within HMPREF1078_RS06310 at 624.699 kb on - strand, within HMPREF1078_RS06310 at 624.722 kb on - strand, within HMPREF1078_RS06310 at 624.724 kb on + strand, within HMPREF1078_RS06310 at 624.725 kb on - strand, within HMPREF1078_RS06310 at 624.725 kb on - strand, within HMPREF1078_RS06310 at 624.725 kb on - strand, within HMPREF1078_RS06310 at 624.725 kb on - strand, within HMPREF1078_RS06310 at 624.743 kb on - strand, within HMPREF1078_RS06310 at 624.743 kb on - strand, within HMPREF1078_RS06310 at 624.799 kb on - strand, within HMPREF1078_RS06310 at 624.799 kb on - strand, within HMPREF1078_RS06310 at 624.831 kb on + strand, within HMPREF1078_RS06310 at 624.832 kb on - strand, within HMPREF1078_RS06310 at 624.832 kb on - strand, within HMPREF1078_RS06310 at 624.832 kb on - strand, within HMPREF1078_RS06310 at 624.853 kb on + strand, within HMPREF1078_RS06310 at 624.853 kb on + strand, within HMPREF1078_RS06310 at 624.854 kb on - strand, within HMPREF1078_RS06310 at 624.854 kb on - strand, within HMPREF1078_RS06310 at 624.854 kb on - strand, within HMPREF1078_RS06310 at 624.854 kb on - strand, within HMPREF1078_RS06310 at 624.944 kb on - strand, within HMPREF1078_RS06310 at 624.944 kb on - strand, within HMPREF1078_RS06310 at 625.067 kb on - strand, within HMPREF1078_RS06310 at 625.142 kb on + strand, within HMPREF1078_RS06310 at 625.183 kb on + strand at 625.184 kb on - strand at 625.184 kb on - strand at 625.184 kb on - strand at 625.209 kb on - strand at 625.210 kb on + strand at 625.211 kb on - strand at 625.219 kb on + strand at 625.219 kb on + strand at 625.219 kb on + strand at 625.219 kb on + strand at 625.219 kb on + strand at 625.219 kb on + strand at 625.220 kb on - strand at 625.220 kb on - strand at 625.220 kb on - strand at 625.229 kb on + strand at 625.237 kb on + strand at 625.238 kb on - strand at 625.238 kb on - strand at 625.246 kb on + strand at 625.307 kb on - strand at 625.310 kb on - strand at 625.310 kb on - strand at 625.323 kb on + strand at 625.329 kb on + strand at 625.329 kb on + strand at 625.329 kb on + strand at 625.329 kb on + strand at 625.330 kb on - strand at 625.330 kb on - strand at 625.330 kb on - strand at 625.330 kb on - strand at 625.330 kb on - strand at 625.330 kb on - strand at 625.343 kb on + strand at 625.344 kb on - strand at 625.344 kb on - strand at 625.344 kb on - strand at 625.344 kb on - strand at 625.352 kb on + strand at 625.353 kb on - strand at 625.373 kb on + strand at 625.374 kb on - strand at 625.414 kb on + strand, within HMPREF1078_RS06315 at 625.416 kb on - strand, within HMPREF1078_RS06315 at 625.453 kb on - strand, within HMPREF1078_RS06315 at 625.453 kb on - strand, within HMPREF1078_RS06315 at 625.567 kb on - strand, within HMPREF1078_RS06315 at 625.606 kb on + strand, within HMPREF1078_RS06315 at 625.607 kb on - strand, within HMPREF1078_RS06315 at 625.607 kb on - strand, within HMPREF1078_RS06315 at 625.607 kb on - strand, within HMPREF1078_RS06315 at 625.607 kb on - strand, within HMPREF1078_RS06315 at 625.609 kb on - strand, within HMPREF1078_RS06315 at 625.631 kb on + strand, within HMPREF1078_RS06315 at 625.632 kb on - strand, within HMPREF1078_RS06315 at 625.632 kb on - strand, within HMPREF1078_RS06315 at 625.645 kb on + strand, within HMPREF1078_RS06315 at 625.645 kb on + strand, within HMPREF1078_RS06315 at 625.646 kb on - strand, within HMPREF1078_RS06315 at 625.646 kb on - strand, within HMPREF1078_RS06315 at 625.789 kb on - strand at 625.800 kb on + strand at 625.806 kb on + strand at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.846 kb on + strand, within HMPREF1078_RS06320 at 625.847 kb on - strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.878 kb on + strand, within HMPREF1078_RS06320 at 625.879 kb on - strand, within HMPREF1078_RS06320 at 625.933 kb on + strand, within HMPREF1078_RS06320 at 625.933 kb on + strand, within HMPREF1078_RS06320 at 625.933 kb on + strand, within HMPREF1078_RS06320 at 625.934 kb on - strand, within HMPREF1078_RS06320 at 625.934 kb on - strand, within HMPREF1078_RS06320 at 625.934 kb on - strand, within HMPREF1078_RS06320 at 625.976 kb on + strand, within HMPREF1078_RS06320 at 626.000 kb on + strand, within HMPREF1078_RS06320 at 626.000 kb on + strand, within HMPREF1078_RS06320 at 626.001 kb on - strand, within HMPREF1078_RS06320 at 626.001 kb on - strand, within HMPREF1078_RS06320 at 626.088 kb on + strand at 626.100 kb on + strand at 626.100 kb on + strand at 626.100 kb on + strand at 626.100 kb on + strand at 626.100 kb on + strand at 626.101 kb on - strand at 626.101 kb on - strand at 626.101 kb on - strand at 626.101 kb on - strand at 626.102 kb on + strand at 626.102 kb on + strand at 626.102 kb on + strand at 626.102 kb on + strand at 626.102 kb on + strand at 626.102 kb on + strand at 626.103 kb on - strand at 626.103 kb on - strand at 626.103 kb on - strand at 626.103 kb on - strand at 626.103 kb on - strand at 626.110 kb on - strand at 626.110 kb on - strand at 626.110 kb on - strand at 626.110 kb on - strand at 626.110 kb on - strand at 626.117 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.126 kb on - strand at 626.130 kb on + strand at 626.130 kb on + strand at 626.203 kb on + strand at 626.203 kb on + strand at 626.207 kb on + strand at 626.362 kb on + strand, within HMPREF1078_RS06325 at 626.363 kb on - strand, within HMPREF1078_RS06325 at 626.434 kb on - strand, within HMPREF1078_RS06325 at 626.434 kb on - strand, within HMPREF1078_RS06325 at 626.434 kb on - strand, within HMPREF1078_RS06325 at 626.460 kb on - strand, within HMPREF1078_RS06325 at 626.460 kb on - strand, within HMPREF1078_RS06325 at 626.562 kb on + strand, within HMPREF1078_RS06325 at 626.628 kb on + strand, within HMPREF1078_RS06325 at 626.628 kb on + strand, within HMPREF1078_RS06325 at 626.628 kb on + strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.629 kb on - strand, within HMPREF1078_RS06325 at 626.651 kb on + strand, within HMPREF1078_RS06325 at 626.663 kb on - strand, within HMPREF1078_RS06325 at 626.663 kb on - strand, within HMPREF1078_RS06325 at 626.781 kb on - strand, within HMPREF1078_RS06325 at 626.781 kb on - strand, within HMPREF1078_RS06325
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) remove 624,331 - HMPREF1078_RS06310 0.45 -0.6 624,339 + HMPREF1078_RS06310 0.45 -0.3 624,347 + HMPREF1078_RS06310 0.46 -0.7 624,376 - HMPREF1078_RS06310 0.47 +1.0 624,378 - HMPREF1078_RS06310 0.48 +0.0 624,389 + HMPREF1078_RS06310 0.48 +0.5 624,389 + HMPREF1078_RS06310 0.48 -1.0 624,390 - HMPREF1078_RS06310 0.48 +1.0 624,390 - HMPREF1078_RS06310 0.48 -1.3 624,390 - HMPREF1078_RS06310 0.48 +0.0 624,458 + HMPREF1078_RS06310 0.52 -0.4 624,459 - HMPREF1078_RS06310 0.52 +0.1 624,502 + HMPREF1078_RS06310 0.54 +0.5 624,502 + HMPREF1078_RS06310 0.54 -0.8 624,503 - HMPREF1078_RS06310 0.54 -0.6 624,503 - HMPREF1078_RS06310 0.54 -1.3 624,503 - HMPREF1078_RS06310 0.54 +0.6 624,588 + HMPREF1078_RS06310 0.59 -1.3 624,589 - HMPREF1078_RS06310 0.59 +0.2 624,590 + HMPREF1078_RS06310 0.59 -0.1 624,591 - HMPREF1078_RS06310 0.59 +0.3 624,661 + HMPREF1078_RS06310 0.63 -1.6 624,661 + HMPREF1078_RS06310 0.63 -0.8 624,662 - HMPREF1078_RS06310 0.63 -0.2 624,662 - HMPREF1078_RS06310 0.63 -0.5 624,689 - HMPREF1078_RS06310 0.65 -0.4 624,699 - HMPREF1078_RS06310 0.65 -0.8 624,722 - HMPREF1078_RS06310 0.67 -0.4 624,724 + HMPREF1078_RS06310 0.67 +0.5 624,725 - HMPREF1078_RS06310 0.67 -1.9 624,725 - HMPREF1078_RS06310 0.67 +1.3 624,725 - HMPREF1078_RS06310 0.67 +0.3 624,725 - HMPREF1078_RS06310 0.67 -0.6 624,743 - HMPREF1078_RS06310 0.68 +0.8 624,743 - HMPREF1078_RS06310 0.68 -0.9 624,799 - HMPREF1078_RS06310 0.71 +0.8 624,799 - HMPREF1078_RS06310 0.71 +0.6 624,831 + HMPREF1078_RS06310 0.73 +0.1 624,832 - HMPREF1078_RS06310 0.73 -0.0 624,832 - HMPREF1078_RS06310 0.73 -0.2 624,832 - HMPREF1078_RS06310 0.73 +0.3 624,853 + HMPREF1078_RS06310 0.74 -0.6 624,853 + HMPREF1078_RS06310 0.74 +0.8 624,854 - HMPREF1078_RS06310 0.74 -1.8 624,854 - HMPREF1078_RS06310 0.74 -0.0 624,854 - HMPREF1078_RS06310 0.74 +0.0 624,854 - HMPREF1078_RS06310 0.74 +0.2 624,944 - HMPREF1078_RS06310 0.79 +0.4 624,944 - HMPREF1078_RS06310 0.79 -0.2 625,067 - HMPREF1078_RS06310 0.86 +0.1 625,142 + HMPREF1078_RS06310 0.90 +0.3 625,183 + -1.7 625,184 - +0.4 625,184 - +0.1 625,184 - -1.2 625,209 - -1.0 625,210 + +0.4 625,211 - -0.3 625,219 + -0.6 625,219 + -0.0 625,219 + -0.6 625,219 + +0.3 625,219 + -0.6 625,219 + -0.4 625,220 - +0.8 625,220 - -0.2 625,220 - -0.3 625,229 + +0.6 625,237 + -1.6 625,238 - -0.4 625,238 - -0.2 625,246 + +0.6 625,307 - +0.5 625,310 - -0.2 625,310 - -0.4 625,323 + +0.1 625,329 + -0.8 625,329 + -0.2 625,329 + +0.4 625,329 + +0.5 625,330 - -0.4 625,330 - -0.0 625,330 - -1.0 625,330 - -0.1 625,330 - -0.3 625,330 - -0.2 625,343 + +0.3 625,344 - -0.2 625,344 - +0.4 625,344 - -0.7 625,344 - -1.0 625,352 + -0.9 625,353 - +0.3 625,373 + +0.8 625,374 - +0.1 625,414 + HMPREF1078_RS06315 0.19 +0.4 625,416 - HMPREF1078_RS06315 0.19 +0.2 625,453 - HMPREF1078_RS06315 0.27 -0.7 625,453 - HMPREF1078_RS06315 0.27 -0.3 625,567 - HMPREF1078_RS06315 0.52 -0.4 625,606 + HMPREF1078_RS06315 0.61 +0.4 625,607 - HMPREF1078_RS06315 0.61 +0.6 625,607 - HMPREF1078_RS06315 0.61 -0.6 625,607 - HMPREF1078_RS06315 0.61 +1.7 625,607 - HMPREF1078_RS06315 0.61 -0.7 625,609 - HMPREF1078_RS06315 0.62 +2.2 625,631 + HMPREF1078_RS06315 0.66 -0.6 625,632 - HMPREF1078_RS06315 0.67 -0.3 625,632 - HMPREF1078_RS06315 0.67 +0.5 625,645 + HMPREF1078_RS06315 0.70 -0.2 625,645 + HMPREF1078_RS06315 0.70 -1.3 625,646 - HMPREF1078_RS06315 0.70 -0.2 625,646 - HMPREF1078_RS06315 0.70 +2.3 625,789 - +0.2 625,800 + -0.4 625,806 + +0.5 625,846 + HMPREF1078_RS06320 0.17 -0.7 625,846 + HMPREF1078_RS06320 0.17 -0.7 625,846 + HMPREF1078_RS06320 0.17 +0.6 625,846 + HMPREF1078_RS06320 0.17 -0.7 625,846 + HMPREF1078_RS06320 0.17 -0.9 625,846 + HMPREF1078_RS06320 0.17 -0.1 625,847 - HMPREF1078_RS06320 0.17 -0.8 625,878 + HMPREF1078_RS06320 0.27 -1.6 625,878 + HMPREF1078_RS06320 0.27 -0.3 625,878 + HMPREF1078_RS06320 0.27 +0.1 625,878 + HMPREF1078_RS06320 0.27 -1.8 625,878 + HMPREF1078_RS06320 0.27 +1.0 625,878 + HMPREF1078_RS06320 0.27 -0.1 625,879 - HMPREF1078_RS06320 0.27 -0.4 625,933 + HMPREF1078_RS06320 0.43 -0.8 625,933 + HMPREF1078_RS06320 0.43 -1.4 625,933 + HMPREF1078_RS06320 0.43 +0.1 625,934 - HMPREF1078_RS06320 0.44 +0.7 625,934 - HMPREF1078_RS06320 0.44 -1.0 625,934 - HMPREF1078_RS06320 0.44 -0.6 625,976 + HMPREF1078_RS06320 0.56 -0.2 626,000 + HMPREF1078_RS06320 0.63 +0.5 626,000 + HMPREF1078_RS06320 0.63 +2.0 626,001 - HMPREF1078_RS06320 0.64 -0.1 626,001 - HMPREF1078_RS06320 0.64 +0.1 626,088 + -0.2 626,100 + -0.8 626,100 + -0.0 626,100 + -0.2 626,100 + +0.6 626,100 + +0.6 626,101 - +0.3 626,101 - +0.1 626,101 - +0.6 626,101 - -0.4 626,102 + -0.4 626,102 + +1.8 626,102 + -0.3 626,102 + -0.2 626,102 + +0.7 626,102 + +1.4 626,103 - +0.1 626,103 - -0.2 626,103 - -0.1 626,103 - +0.2 626,103 - -1.1 626,110 - +0.7 626,110 - +0.8 626,110 - -0.3 626,110 - -0.4 626,110 - -0.4 626,117 + +1.6 626,119 + -0.9 626,119 + -0.5 626,126 - +1.0 626,130 + +0.0 626,130 + -0.0 626,203 + -1.2 626,203 + +0.0 626,207 + -0.1 626,362 + HMPREF1078_RS06325 0.25 +0.0 626,363 - HMPREF1078_RS06325 0.25 +0.5 626,434 - HMPREF1078_RS06325 0.33 -0.9 626,434 - HMPREF1078_RS06325 0.33 -0.4 626,434 - HMPREF1078_RS06325 0.33 +0.0 626,460 - HMPREF1078_RS06325 0.36 +0.4 626,460 - HMPREF1078_RS06325 0.36 -0.4 626,562 + HMPREF1078_RS06325 0.47 +0.2 626,628 + HMPREF1078_RS06325 0.54 +0.2 626,628 + HMPREF1078_RS06325 0.54 -0.3 626,628 + HMPREF1078_RS06325 0.54 +0.0 626,629 - HMPREF1078_RS06325 0.54 -0.5 626,629 - HMPREF1078_RS06325 0.54 -1.6 626,629 - HMPREF1078_RS06325 0.54 -0.6 626,629 - HMPREF1078_RS06325 0.54 +0.2 626,629 - HMPREF1078_RS06325 0.54 -1.4 626,629 - HMPREF1078_RS06325 0.54 -0.9 626,629 - HMPREF1078_RS06325 0.54 -0.3 626,651 + HMPREF1078_RS06325 0.56 -0.7 626,663 - HMPREF1078_RS06325 0.57 +0.4 626,663 - HMPREF1078_RS06325 0.57 -0.3 626,781 - HMPREF1078_RS06325 0.70 +0.3 626,781 - HMPREF1078_RS06325 0.70 +0.5
Or see this region's nucleotide sequence