Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS12360

Experiment: Brucella 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS12360 and HMPREF1078_RS12365 are separated by 145 nucleotidesHMPREF1078_RS12365 and HMPREF1078_RS12370 are separated by 2 nucleotides HMPREF1078_RS12360: HMPREF1078_RS12360 - hypothetical protein, at 464,038 to 465,150 _RS12360 HMPREF1078_RS12365: HMPREF1078_RS12365 - NVEALA domain-containing protein, at 465,296 to 465,526 _RS12365 HMPREF1078_RS12370: HMPREF1078_RS12370 - BF3164 family lipoprotein, at 465,529 to 466,584 _RS12370 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2at 463.115 kb on + strandat 463.116 kb on - strandat 463.201 kb on + strandat 463.220 kb on - strandat 463.248 kb on + strandat 463.252 kb on + strandat 463.294 kb on - strandat 463.301 kb on - strandat 463.308 kb on - strandat 463.337 kb on - strandat 463.339 kb on - strandat 463.434 kb on - strandat 463.444 kb on + strandat 463.521 kb on - strandat 463.545 kb on - strandat 463.601 kb on + strandat 463.710 kb on + strandat 463.767 kb on + strandat 463.767 kb on + strandat 463.770 kb on - strandat 463.787 kb on + strandat 463.789 kb on + strandat 463.802 kb on - strandat 463.875 kb on - strandat 463.875 kb on - strandat 463.908 kb on - strandat 464.055 kb on + strandat 464.055 kb on + strandat 464.056 kb on - strandat 464.058 kb on + strandat 464.120 kb on - strandat 464.196 kb on + strand, within HMPREF1078_RS12360at 464.227 kb on - strand, within HMPREF1078_RS12360at 464.328 kb on + strand, within HMPREF1078_RS12360at 464.339 kb on - strand, within HMPREF1078_RS12360at 464.426 kb on - strand, within HMPREF1078_RS12360at 464.490 kb on + strand, within HMPREF1078_RS12360at 464.494 kb on - strand, within HMPREF1078_RS12360at 464.495 kb on + strand, within HMPREF1078_RS12360at 464.521 kb on + strand, within HMPREF1078_RS12360at 464.522 kb on - strand, within HMPREF1078_RS12360at 464.523 kb on + strand, within HMPREF1078_RS12360at 464.524 kb on - strand, within HMPREF1078_RS12360at 464.524 kb on - strand, within HMPREF1078_RS12360at 464.524 kb on - strand, within HMPREF1078_RS12360at 464.525 kb on + strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.526 kb on - strand, within HMPREF1078_RS12360at 464.532 kb on + strand, within HMPREF1078_RS12360at 464.615 kb on + strand, within HMPREF1078_RS12360at 464.615 kb on + strand, within HMPREF1078_RS12360at 464.615 kb on + strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.616 kb on - strand, within HMPREF1078_RS12360at 464.759 kb on - strand, within HMPREF1078_RS12360at 465.083 kb on - strandat 465.083 kb on - strandat 465.110 kb on + strandat 465.128 kb on - strandat 465.128 kb on - strandat 465.132 kb on + strandat 465.132 kb on + strandat 465.139 kb on - strandat 465.207 kb on - strandat 465.332 kb on - strand, within HMPREF1078_RS12365at 465.455 kb on + strand, within HMPREF1078_RS12365at 465.455 kb on + strand, within HMPREF1078_RS12365at 465.456 kb on - strand, within HMPREF1078_RS12365at 465.461 kb on + strand, within HMPREF1078_RS12365at 465.485 kb on + strand, within HMPREF1078_RS12365at 465.485 kb on + strand, within HMPREF1078_RS12365at 465.520 kb on - strandat 465.544 kb on + strandat 465.544 kb on + strandat 465.545 kb on - strandat 465.545 kb on - strandat 465.545 kb on - strandat 465.545 kb on - strandat 465.548 kb on + strandat 465.548 kb on + strandat 465.549 kb on - strandat 465.557 kb on + strandat 465.557 kb on + strandat 465.557 kb on + strandat 465.557 kb on + strandat 465.557 kb on + strandat 465.558 kb on - strandat 465.558 kb on - strandat 465.558 kb on - strandat 465.597 kb on + strandat 465.601 kb on + strandat 465.602 kb on - strandat 465.602 kb on - strandat 465.641 kb on + strand, within HMPREF1078_RS12370at 465.711 kb on + strand, within HMPREF1078_RS12370at 465.713 kb on + strand, within HMPREF1078_RS12370at 465.713 kb on + strand, within HMPREF1078_RS12370at 465.713 kb on + strand, within HMPREF1078_RS12370at 465.713 kb on + strand, within HMPREF1078_RS12370at 465.714 kb on - strand, within HMPREF1078_RS12370at 465.714 kb on - strand, within HMPREF1078_RS12370at 465.714 kb on - strand, within HMPREF1078_RS12370at 465.714 kb on - strand, within HMPREF1078_RS12370at 465.718 kb on - strand, within HMPREF1078_RS12370at 465.718 kb on - strand, within HMPREF1078_RS12370at 465.728 kb on - strand, within HMPREF1078_RS12370at 465.748 kb on + strand, within HMPREF1078_RS12370at 465.749 kb on - strand, within HMPREF1078_RS12370at 465.783 kb on + strand, within HMPREF1078_RS12370at 465.867 kb on - strand, within HMPREF1078_RS12370at 465.868 kb on + strand, within HMPREF1078_RS12370at 465.868 kb on + strand, within HMPREF1078_RS12370at 465.869 kb on - strand, within HMPREF1078_RS12370at 465.869 kb on - strand, within HMPREF1078_RS12370at 465.951 kb on - strand, within HMPREF1078_RS12370at 466.083 kb on + strand, within HMPREF1078_RS12370at 466.088 kb on + strand, within HMPREF1078_RS12370at 466.092 kb on + strand, within HMPREF1078_RS12370at 466.092 kb on + strand, within HMPREF1078_RS12370

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C)
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463,115 + +1.7
463,116 - -0.5
463,201 + -1.0
463,220 - +1.3
463,248 + +0.3
463,252 + -0.6
463,294 - -0.1
463,301 - -0.7
463,308 - -0.6
463,337 - +1.4
463,339 - -0.6
463,434 - -1.1
463,444 + +0.3
463,521 - -0.8
463,545 - -0.1
463,601 + -0.2
463,710 + -1.8
463,767 + +0.2
463,767 + +0.8
463,770 - +0.2
463,787 + -0.2
463,789 + +0.0
463,802 - +1.2
463,875 - -0.3
463,875 - -1.0
463,908 - -0.3
464,055 + +0.4
464,055 + -0.3
464,056 - -0.4
464,058 + -1.0
464,120 - -0.6
464,196 + HMPREF1078_RS12360 0.14 +0.6
464,227 - HMPREF1078_RS12360 0.17 -0.3
464,328 + HMPREF1078_RS12360 0.26 -0.3
464,339 - HMPREF1078_RS12360 0.27 +0.2
464,426 - HMPREF1078_RS12360 0.35 -0.4
464,490 + HMPREF1078_RS12360 0.41 -0.1
464,494 - HMPREF1078_RS12360 0.41 -0.7
464,495 + HMPREF1078_RS12360 0.41 -0.9
464,521 + HMPREF1078_RS12360 0.43 +1.0
464,522 - HMPREF1078_RS12360 0.43 -0.5
464,523 + HMPREF1078_RS12360 0.44 +0.2
464,524 - HMPREF1078_RS12360 0.44 -0.0
464,524 - HMPREF1078_RS12360 0.44 -0.2
464,524 - HMPREF1078_RS12360 0.44 -0.7
464,525 + HMPREF1078_RS12360 0.44 +0.5
464,526 - HMPREF1078_RS12360 0.44 -0.0
464,526 - HMPREF1078_RS12360 0.44 -0.1
464,526 - HMPREF1078_RS12360 0.44 -0.0
464,526 - HMPREF1078_RS12360 0.44 -0.4
464,526 - HMPREF1078_RS12360 0.44 +0.6
464,526 - HMPREF1078_RS12360 0.44 -0.0
464,526 - HMPREF1078_RS12360 0.44 +0.5
464,526 - HMPREF1078_RS12360 0.44 +0.3
464,532 + HMPREF1078_RS12360 0.44 +2.3
464,615 + HMPREF1078_RS12360 0.52 -0.3
464,615 + HMPREF1078_RS12360 0.52 +0.1
464,615 + HMPREF1078_RS12360 0.52 +0.1
464,616 - HMPREF1078_RS12360 0.52 -0.3
464,616 - HMPREF1078_RS12360 0.52 +0.5
464,616 - HMPREF1078_RS12360 0.52 -0.0
464,616 - HMPREF1078_RS12360 0.52 +0.5
464,616 - HMPREF1078_RS12360 0.52 -0.8
464,616 - HMPREF1078_RS12360 0.52 +0.5
464,759 - HMPREF1078_RS12360 0.65 -0.7
465,083 - -0.1
465,083 - +1.4
465,110 + -0.8
465,128 - -0.8
465,128 - -1.7
465,132 + -0.4
465,132 + -0.2
465,139 - +0.3
465,207 - -0.8
465,332 - HMPREF1078_RS12365 0.16 -0.7
465,455 + HMPREF1078_RS12365 0.69 +0.1
465,455 + HMPREF1078_RS12365 0.69 +0.4
465,456 - HMPREF1078_RS12365 0.69 -0.1
465,461 + HMPREF1078_RS12365 0.71 +1.2
465,485 + HMPREF1078_RS12365 0.82 -2.0
465,485 + HMPREF1078_RS12365 0.82 -0.8
465,520 - +0.4
465,544 + +0.5
465,544 + +0.5
465,545 - -0.4
465,545 - +0.7
465,545 - +0.5
465,545 - -0.2
465,548 + +0.2
465,548 + +0.1
465,549 - +0.6
465,557 + -0.5
465,557 + +0.9
465,557 + -0.0
465,557 + +1.1
465,557 + -0.6
465,558 - -0.3
465,558 - +1.0
465,558 - -0.1
465,597 + -0.3
465,601 + +0.8
465,602 - -1.2
465,602 - -1.5
465,641 + HMPREF1078_RS12370 0.11 -1.0
465,711 + HMPREF1078_RS12370 0.17 +0.1
465,713 + HMPREF1078_RS12370 0.17 -0.2
465,713 + HMPREF1078_RS12370 0.17 -0.1
465,713 + HMPREF1078_RS12370 0.17 +0.5
465,713 + HMPREF1078_RS12370 0.17 +0.8
465,714 - HMPREF1078_RS12370 0.18 -0.4
465,714 - HMPREF1078_RS12370 0.18 +0.3
465,714 - HMPREF1078_RS12370 0.18 +0.0
465,714 - HMPREF1078_RS12370 0.18 -0.2
465,718 - HMPREF1078_RS12370 0.18 +0.6
465,718 - HMPREF1078_RS12370 0.18 +0.2
465,728 - HMPREF1078_RS12370 0.19 +0.4
465,748 + HMPREF1078_RS12370 0.21 -1.5
465,749 - HMPREF1078_RS12370 0.21 +0.1
465,783 + HMPREF1078_RS12370 0.24 +0.3
465,867 - HMPREF1078_RS12370 0.32 -0.3
465,868 + HMPREF1078_RS12370 0.32 +0.3
465,868 + HMPREF1078_RS12370 0.32 -0.2
465,869 - HMPREF1078_RS12370 0.32 +0.3
465,869 - HMPREF1078_RS12370 0.32 -1.2
465,951 - HMPREF1078_RS12370 0.40 -0.4
466,083 + HMPREF1078_RS12370 0.52 -0.7
466,088 + HMPREF1078_RS12370 0.53 -0.5
466,092 + HMPREF1078_RS12370 0.53 +0.3
466,092 + HMPREF1078_RS12370 0.53 +2.3

Or see this region's nucleotide sequence