Experiment: Brucella 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07770 and HMPREF1078_RS07775 are separated by 96 nucleotides HMPREF1078_RS07775 and HMPREF1078_RS07780 are separated by 3 nucleotides HMPREF1078_RS07780 and HMPREF1078_RS07785 are separated by 141 nucleotides
HMPREF1078_RS07770: HMPREF1078_RS07770 - GH92 family glycosyl hydrolase, at 98,411 to 100,633
_RS07770
HMPREF1078_RS07775: HMPREF1078_RS07775 - twin-arginine translocase subunit TatC, at 100,730 to 101,605
_RS07775
HMPREF1078_RS07780: HMPREF1078_RS07780 - twin-arginine translocase TatA/TatE family subunit, at 101,609 to 101,803
_RS07780
HMPREF1078_RS07785: HMPREF1078_RS07785 - ACP S-malonyltransferase, at 101,945 to 102,826
_RS07785
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.792 kb on + strand, within HMPREF1078_RS07770 at 99.863 kb on - strand, within HMPREF1078_RS07770 at 99.919 kb on + strand, within HMPREF1078_RS07770 at 99.922 kb on - strand, within HMPREF1078_RS07770 at 99.958 kb on + strand, within HMPREF1078_RS07770 at 100.085 kb on + strand, within HMPREF1078_RS07770 at 100.086 kb on - strand, within HMPREF1078_RS07770 at 100.090 kb on - strand, within HMPREF1078_RS07770 at 100.165 kb on + strand, within HMPREF1078_RS07770 at 100.165 kb on + strand, within HMPREF1078_RS07770 at 100.166 kb on - strand, within HMPREF1078_RS07770 at 100.166 kb on - strand, within HMPREF1078_RS07770 at 100.166 kb on - strand, within HMPREF1078_RS07770 at 100.167 kb on + strand, within HMPREF1078_RS07770 at 100.213 kb on + strand, within HMPREF1078_RS07770 at 100.214 kb on - strand, within HMPREF1078_RS07770 at 100.214 kb on - strand, within HMPREF1078_RS07770 at 100.214 kb on - strand, within HMPREF1078_RS07770 at 100.242 kb on + strand, within HMPREF1078_RS07770 at 100.242 kb on + strand, within HMPREF1078_RS07770 at 100.342 kb on + strand, within HMPREF1078_RS07770 at 100.504 kb on + strand at 100.504 kb on + strand at 100.504 kb on + strand at 100.505 kb on - strand at 100.505 kb on - strand at 100.505 kb on - strand at 100.505 kb on - strand at 100.505 kb on - strand at 100.507 kb on + strand at 100.513 kb on + strand at 100.542 kb on + strand at 100.543 kb on - strand at 100.543 kb on - strand at 100.549 kb on + strand at 100.550 kb on - strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.617 kb on - strand at 100.622 kb on + strand at 100.622 kb on + strand at 100.624 kb on + strand at 100.624 kb on + strand at 100.624 kb on + strand at 100.625 kb on - strand at 100.625 kb on - strand at 100.625 kb on - strand at 100.625 kb on - strand at 100.625 kb on - strand at 100.643 kb on - strand at 100.678 kb on + strand at 100.678 kb on + strand at 100.678 kb on + strand at 100.679 kb on - strand at 100.679 kb on - strand at 100.684 kb on - strand at 100.703 kb on + strand at 100.704 kb on - strand at 100.704 kb on - strand at 100.706 kb on - strand at 100.709 kb on + strand at 100.714 kb on + strand at 100.753 kb on + strand at 100.753 kb on + strand at 100.753 kb on + strand at 100.753 kb on + strand at 100.753 kb on + strand at 100.753 kb on + strand at 100.754 kb on - strand at 100.754 kb on - strand at 100.754 kb on - strand at 100.841 kb on + strand, within HMPREF1078_RS07775 at 100.842 kb on - strand, within HMPREF1078_RS07775 at 100.842 kb on - strand, within HMPREF1078_RS07775 at 100.867 kb on + strand, within HMPREF1078_RS07775 at 100.879 kb on + strand, within HMPREF1078_RS07775 at 100.880 kb on - strand, within HMPREF1078_RS07775 at 100.880 kb on - strand, within HMPREF1078_RS07775 at 100.880 kb on - strand, within HMPREF1078_RS07775 at 100.923 kb on + strand, within HMPREF1078_RS07775 at 101.030 kb on - strand, within HMPREF1078_RS07775 at 101.036 kb on - strand, within HMPREF1078_RS07775 at 101.037 kb on + strand, within HMPREF1078_RS07775 at 101.037 kb on + strand, within HMPREF1078_RS07775 at 101.038 kb on - strand, within HMPREF1078_RS07775 at 101.038 kb on - strand, within HMPREF1078_RS07775 at 101.063 kb on + strand, within HMPREF1078_RS07775 at 101.065 kb on + strand, within HMPREF1078_RS07775 at 101.065 kb on + strand, within HMPREF1078_RS07775 at 101.066 kb on - strand, within HMPREF1078_RS07775 at 101.066 kb on - strand, within HMPREF1078_RS07775 at 101.082 kb on + strand, within HMPREF1078_RS07775 at 101.082 kb on + strand, within HMPREF1078_RS07775 at 101.082 kb on + strand, within HMPREF1078_RS07775 at 101.115 kb on - strand, within HMPREF1078_RS07775 at 101.115 kb on - strand, within HMPREF1078_RS07775 at 101.119 kb on + strand, within HMPREF1078_RS07775 at 101.119 kb on + strand, within HMPREF1078_RS07775 at 101.120 kb on - strand, within HMPREF1078_RS07775 at 101.203 kb on - strand, within HMPREF1078_RS07775 at 101.255 kb on - strand, within HMPREF1078_RS07775 at 101.320 kb on + strand, within HMPREF1078_RS07775 at 101.422 kb on - strand, within HMPREF1078_RS07775 at 101.422 kb on - strand, within HMPREF1078_RS07775 at 101.454 kb on - strand, within HMPREF1078_RS07775 at 101.454 kb on - strand, within HMPREF1078_RS07775 at 101.457 kb on - strand, within HMPREF1078_RS07775 at 101.457 kb on - strand, within HMPREF1078_RS07775 at 101.469 kb on - strand, within HMPREF1078_RS07775 at 101.470 kb on + strand, within HMPREF1078_RS07775 at 101.470 kb on + strand, within HMPREF1078_RS07775 at 101.471 kb on - strand, within HMPREF1078_RS07775 at 101.488 kb on + strand, within HMPREF1078_RS07775 at 101.488 kb on + strand, within HMPREF1078_RS07775 at 101.516 kb on - strand, within HMPREF1078_RS07775 at 101.630 kb on + strand, within HMPREF1078_RS07780 at 101.635 kb on + strand, within HMPREF1078_RS07780 at 101.692 kb on + strand, within HMPREF1078_RS07780 at 101.758 kb on + strand, within HMPREF1078_RS07780 at 101.758 kb on + strand, within HMPREF1078_RS07780 at 101.758 kb on + strand, within HMPREF1078_RS07780 at 101.759 kb on - strand, within HMPREF1078_RS07780 at 101.806 kb on + strand at 101.806 kb on + strand at 101.806 kb on + strand at 101.811 kb on + strand at 101.811 kb on + strand at 101.826 kb on - strand at 101.854 kb on + strand at 101.863 kb on + strand at 101.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) remove 99,792 + HMPREF1078_RS07770 0.62 +1.5 99,863 - HMPREF1078_RS07770 0.65 -0.0 99,919 + HMPREF1078_RS07770 0.68 -1.9 99,922 - HMPREF1078_RS07770 0.68 -0.5 99,958 + HMPREF1078_RS07770 0.70 -0.0 100,085 + HMPREF1078_RS07770 0.75 +0.0 100,086 - HMPREF1078_RS07770 0.75 +1.1 100,090 - HMPREF1078_RS07770 0.76 -0.7 100,165 + HMPREF1078_RS07770 0.79 -0.8 100,165 + HMPREF1078_RS07770 0.79 +0.0 100,166 - HMPREF1078_RS07770 0.79 -0.4 100,166 - HMPREF1078_RS07770 0.79 +0.8 100,166 - HMPREF1078_RS07770 0.79 +0.6 100,167 + HMPREF1078_RS07770 0.79 +1.2 100,213 + HMPREF1078_RS07770 0.81 -0.5 100,214 - HMPREF1078_RS07770 0.81 +0.2 100,214 - HMPREF1078_RS07770 0.81 -0.1 100,214 - HMPREF1078_RS07770 0.81 +0.3 100,242 + HMPREF1078_RS07770 0.82 -1.5 100,242 + HMPREF1078_RS07770 0.82 +0.3 100,342 + HMPREF1078_RS07770 0.87 -0.1 100,504 + +0.1 100,504 + -0.8 100,504 + +0.4 100,505 - -0.9 100,505 - -0.1 100,505 - +0.2 100,505 - +0.5 100,505 - -0.8 100,507 + -0.1 100,513 + -0.5 100,542 + -0.4 100,543 - -0.8 100,543 - +1.1 100,549 + -0.9 100,550 - +0.2 100,551 + -2.1 100,551 + +0.1 100,617 - -0.3 100,622 + +1.2 100,622 + -0.3 100,624 + +2.1 100,624 + -1.6 100,624 + +0.3 100,625 - -0.7 100,625 - -0.4 100,625 - +0.7 100,625 - +0.9 100,625 - -0.3 100,643 - -1.1 100,678 + +0.1 100,678 + -0.9 100,678 + +0.2 100,679 - +0.3 100,679 - -0.1 100,684 - -2.2 100,703 + +0.6 100,704 - -0.4 100,704 - -0.6 100,706 - -0.9 100,709 + -0.3 100,714 + -1.2 100,753 + +0.7 100,753 + -1.9 100,753 + +1.0 100,753 + -0.6 100,753 + -0.1 100,753 + -0.8 100,754 - +0.4 100,754 - -1.9 100,754 - +0.4 100,841 + HMPREF1078_RS07775 0.13 -0.7 100,842 - HMPREF1078_RS07775 0.13 -1.5 100,842 - HMPREF1078_RS07775 0.13 -0.8 100,867 + HMPREF1078_RS07775 0.16 -1.2 100,879 + HMPREF1078_RS07775 0.17 -0.6 100,880 - HMPREF1078_RS07775 0.17 -0.6 100,880 - HMPREF1078_RS07775 0.17 -0.6 100,880 - HMPREF1078_RS07775 0.17 -1.5 100,923 + HMPREF1078_RS07775 0.22 -0.2 101,030 - HMPREF1078_RS07775 0.34 -0.2 101,036 - HMPREF1078_RS07775 0.35 -1.9 101,037 + HMPREF1078_RS07775 0.35 -1.8 101,037 + HMPREF1078_RS07775 0.35 -0.3 101,038 - HMPREF1078_RS07775 0.35 -1.9 101,038 - HMPREF1078_RS07775 0.35 -0.1 101,063 + HMPREF1078_RS07775 0.38 +0.2 101,065 + HMPREF1078_RS07775 0.38 -0.9 101,065 + HMPREF1078_RS07775 0.38 -0.5 101,066 - HMPREF1078_RS07775 0.38 -0.6 101,066 - HMPREF1078_RS07775 0.38 +1.4 101,082 + HMPREF1078_RS07775 0.40 +0.7 101,082 + HMPREF1078_RS07775 0.40 -0.1 101,082 + HMPREF1078_RS07775 0.40 +1.7 101,115 - HMPREF1078_RS07775 0.44 -1.7 101,115 - HMPREF1078_RS07775 0.44 -1.0 101,119 + HMPREF1078_RS07775 0.44 -0.5 101,119 + HMPREF1078_RS07775 0.44 -2.3 101,120 - HMPREF1078_RS07775 0.45 -0.8 101,203 - HMPREF1078_RS07775 0.54 -2.7 101,255 - HMPREF1078_RS07775 0.60 +0.2 101,320 + HMPREF1078_RS07775 0.67 +0.2 101,422 - HMPREF1078_RS07775 0.79 -0.9 101,422 - HMPREF1078_RS07775 0.79 -1.8 101,454 - HMPREF1078_RS07775 0.83 -0.6 101,454 - HMPREF1078_RS07775 0.83 +1.1 101,457 - HMPREF1078_RS07775 0.83 -0.9 101,457 - HMPREF1078_RS07775 0.83 -0.4 101,469 - HMPREF1078_RS07775 0.84 -0.7 101,470 + HMPREF1078_RS07775 0.84 +0.5 101,470 + HMPREF1078_RS07775 0.84 +0.2 101,471 - HMPREF1078_RS07775 0.85 -2.5 101,488 + HMPREF1078_RS07775 0.87 -0.5 101,488 + HMPREF1078_RS07775 0.87 +0.4 101,516 - HMPREF1078_RS07775 0.90 +0.2 101,630 + HMPREF1078_RS07780 0.11 -0.2 101,635 + HMPREF1078_RS07780 0.13 -1.8 101,692 + HMPREF1078_RS07780 0.43 -2.6 101,758 + HMPREF1078_RS07780 0.76 -1.2 101,758 + HMPREF1078_RS07780 0.76 -1.3 101,758 + HMPREF1078_RS07780 0.76 -2.0 101,759 - HMPREF1078_RS07780 0.77 -0.3 101,806 + -0.1 101,806 + -0.1 101,806 + -0.1 101,811 + -0.2 101,811 + -1.5 101,826 - -0.1 101,854 + +1.6 101,863 + -0.2 101,870 + -0.6
Or see this region's nucleotide sequence