Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05705

Experiment: Brucella 1 x (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS05700 and HMPREF1078_RS05705 are separated by 181 nucleotidesHMPREF1078_RS05705 and HMPREF1078_RS05710 are separated by 148 nucleotides HMPREF1078_RS05700: HMPREF1078_RS05700 - heavy metal translocating P-type ATPase, at 449,241 to 451,175 _RS05700 HMPREF1078_RS05705: HMPREF1078_RS05705 - family 43 glycosylhydrolase, at 451,357 to 452,352 _RS05705 HMPREF1078_RS05710: HMPREF1078_RS05710 - family 43 glycosylhydrolase, at 452,501 to 453,475 _RS05710 Position (kb) 451 452 453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 450.425 kb on + strand, within HMPREF1078_RS05700at 450.523 kb on + strand, within HMPREF1078_RS05700at 450.585 kb on - strand, within HMPREF1078_RS05700at 450.680 kb on - strand, within HMPREF1078_RS05700at 450.765 kb on + strand, within HMPREF1078_RS05700at 451.007 kb on + strandat 451.008 kb on - strandat 451.025 kb on + strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.157 kb on + strandat 451.169 kb on - strandat 451.240 kb on + strandat 451.240 kb on + strandat 451.313 kb on + strandat 451.314 kb on - strandat 451.314 kb on - strandat 451.321 kb on + strandat 451.415 kb on + strandat 451.415 kb on + strandat 451.457 kb on + strand, within HMPREF1078_RS05705at 451.458 kb on - strand, within HMPREF1078_RS05705at 451.716 kb on + strand, within HMPREF1078_RS05705at 451.762 kb on - strand, within HMPREF1078_RS05705at 451.762 kb on - strand, within HMPREF1078_RS05705at 451.836 kb on - strand, within HMPREF1078_RS05705at 451.867 kb on + strand, within HMPREF1078_RS05705at 451.868 kb on - strand, within HMPREF1078_RS05705at 452.183 kb on + strand, within HMPREF1078_RS05705at 452.262 kb on - strandat 452.263 kb on + strandat 452.264 kb on - strandat 452.326 kb on + strandat 452.326 kb on + strandat 452.352 kb on + strandat 452.400 kb on - strandat 452.402 kb on - strandat 452.436 kb on + strandat 452.436 kb on + strandat 452.451 kb on + strandat 452.452 kb on - strandat 452.452 kb on - strandat 452.465 kb on + strandat 452.492 kb on - strandat 452.492 kb on - strandat 452.494 kb on - strandat 452.494 kb on - strandat 452.498 kb on + strandat 452.532 kb on - strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.564 kb on - strandat 452.575 kb on + strandat 452.579 kb on - strandat 452.586 kb on + strandat 452.587 kb on - strandat 452.595 kb on + strandat 452.755 kb on + strand, within HMPREF1078_RS05710at 452.776 kb on + strand, within HMPREF1078_RS05710at 452.776 kb on + strand, within HMPREF1078_RS05710at 452.777 kb on - strand, within HMPREF1078_RS05710at 452.778 kb on + strand, within HMPREF1078_RS05710at 452.778 kb on + strand, within HMPREF1078_RS05710at 452.778 kb on + strand, within HMPREF1078_RS05710at 452.786 kb on - strand, within HMPREF1078_RS05710at 452.847 kb on + strand, within HMPREF1078_RS05710at 452.847 kb on + strand, within HMPREF1078_RS05710at 452.964 kb on + strand, within HMPREF1078_RS05710at 453.007 kb on + strand, within HMPREF1078_RS05710at 453.008 kb on - strand, within HMPREF1078_RS05710at 453.077 kb on - strand, within HMPREF1078_RS05710at 453.126 kb on + strand, within HMPREF1078_RS05710at 453.126 kb on + strand, within HMPREF1078_RS05710at 453.135 kb on + strand, within HMPREF1078_RS05710at 453.152 kb on - strand, within HMPREF1078_RS05710at 453.278 kb on - strand, within HMPREF1078_RS05710at 453.278 kb on - strand, within HMPREF1078_RS05710at 453.278 kb on - strand, within HMPREF1078_RS05710at 453.294 kb on - strand, within HMPREF1078_RS05710at 453.317 kb on - strand, within HMPREF1078_RS05710at 453.318 kb on + strand, within HMPREF1078_RS05710at 453.318 kb on + strand, within HMPREF1078_RS05710at 453.318 kb on + strand, within HMPREF1078_RS05710at 453.319 kb on - strand, within HMPREF1078_RS05710at 453.322 kb on - strand, within HMPREF1078_RS05710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C)
remove
450,425 + HMPREF1078_RS05700 0.61 -0.3
450,523 + HMPREF1078_RS05700 0.66 +0.5
450,585 - HMPREF1078_RS05700 0.69 -0.6
450,680 - HMPREF1078_RS05700 0.74 +1.0
450,765 + HMPREF1078_RS05700 0.79 -0.7
451,007 + -0.2
451,008 - -0.3
451,025 + +0.6
451,026 - -1.8
451,026 - -0.4
451,026 - -0.2
451,157 + -4.2
451,169 - +1.6
451,240 + -0.2
451,240 + -0.4
451,313 + -0.8
451,314 - -2.7
451,314 - -0.3
451,321 + -0.2
451,415 + +0.1
451,415 + +0.3
451,457 + HMPREF1078_RS05705 0.10 +0.4
451,458 - HMPREF1078_RS05705 0.10 +1.2
451,716 + HMPREF1078_RS05705 0.36 +0.3
451,762 - HMPREF1078_RS05705 0.41 -0.3
451,762 - HMPREF1078_RS05705 0.41 +0.1
451,836 - HMPREF1078_RS05705 0.48 +0.2
451,867 + HMPREF1078_RS05705 0.51 +0.8
451,868 - HMPREF1078_RS05705 0.51 +0.7
452,183 + HMPREF1078_RS05705 0.83 +0.4
452,262 - +0.2
452,263 + +0.4
452,264 - +0.0
452,326 + +0.2
452,326 + +0.2
452,352 + -0.9
452,400 - -1.2
452,402 - -1.6
452,436 + -0.3
452,436 + +0.9
452,451 + -0.6
452,452 - +0.9
452,452 - -0.0
452,465 + -1.3
452,492 - -0.0
452,492 - -0.3
452,494 - +0.6
452,494 - -0.6
452,498 + -1.5
452,532 - -0.3
452,551 + -0.4
452,551 + +0.1
452,551 + -0.3
452,564 - -0.9
452,575 + -1.5
452,579 - -0.9
452,586 + -2.0
452,587 - +0.8
452,595 + -0.4
452,755 + HMPREF1078_RS05710 0.26 -0.3
452,776 + HMPREF1078_RS05710 0.28 -0.2
452,776 + HMPREF1078_RS05710 0.28 +0.3
452,777 - HMPREF1078_RS05710 0.28 -1.3
452,778 + HMPREF1078_RS05710 0.28 +0.9
452,778 + HMPREF1078_RS05710 0.28 -1.1
452,778 + HMPREF1078_RS05710 0.28 +0.3
452,786 - HMPREF1078_RS05710 0.29 +0.1
452,847 + HMPREF1078_RS05710 0.35 -0.2
452,847 + HMPREF1078_RS05710 0.35 -1.4
452,964 + HMPREF1078_RS05710 0.47 -0.5
453,007 + HMPREF1078_RS05710 0.52 +0.4
453,008 - HMPREF1078_RS05710 0.52 -0.2
453,077 - HMPREF1078_RS05710 0.59 -1.2
453,126 + HMPREF1078_RS05710 0.64 +0.1
453,126 + HMPREF1078_RS05710 0.64 -0.8
453,135 + HMPREF1078_RS05710 0.65 +0.3
453,152 - HMPREF1078_RS05710 0.67 +1.2
453,278 - HMPREF1078_RS05710 0.80 +0.2
453,278 - HMPREF1078_RS05710 0.80 +0.2
453,278 - HMPREF1078_RS05710 0.80 +0.8
453,294 - HMPREF1078_RS05710 0.81 -0.3
453,317 - HMPREF1078_RS05710 0.84 -0.2
453,318 + HMPREF1078_RS05710 0.84 -1.4
453,318 + HMPREF1078_RS05710 0.84 +0.2
453,318 + HMPREF1078_RS05710 0.84 +0.1
453,319 - HMPREF1078_RS05710 0.84 -1.0
453,322 - HMPREF1078_RS05710 0.84 +0.6

Or see this region's nucleotide sequence