Experiment: BHI 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02785 and HMPREF1078_RS02790 are separated by 301 nucleotides HMPREF1078_RS02790 and HMPREF1078_RS02795 are separated by 8 nucleotides HMPREF1078_RS02795 and HMPREF1078_RS02800 are separated by 259 nucleotides HMPREF1078_RS02800 and HMPREF1078_RS02805 overlap by 4 nucleotides
HMPREF1078_RS02785: HMPREF1078_RS02785 - site-specific integrase, at 680,269 to 681,516
_RS02785
HMPREF1078_RS02790: HMPREF1078_RS02790 - HigA family addiction module antitoxin, at 681,818 to 682,150
_RS02790
HMPREF1078_RS02795: HMPREF1078_RS02795 - type II toxin-antitoxin system RelE/ParE family toxin, at 682,159 to 682,476
_RS02795
HMPREF1078_RS02800: HMPREF1078_RS02800 - hypothetical protein, at 682,736 to 683,113
_RS02800
HMPREF1078_RS02805: HMPREF1078_RS02805 - hypothetical protein, at 683,110 to 683,415
_RS02805
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.373 kb on + strand, within HMPREF1078_RS02785 at 681.384 kb on + strand, within HMPREF1078_RS02785 at 681.384 kb on + strand, within HMPREF1078_RS02785 at 681.418 kb on - strand at 681.418 kb on - strand at 681.473 kb on + strand at 681.625 kb on - strand at 681.694 kb on - strand at 681.694 kb on - strand at 681.696 kb on + strand at 681.697 kb on - strand at 681.697 kb on - strand at 681.697 kb on - strand at 681.711 kb on + strand at 681.741 kb on - strand at 681.779 kb on + strand at 681.783 kb on - strand at 681.788 kb on - strand at 681.795 kb on + strand at 681.795 kb on + strand at 681.795 kb on + strand at 681.799 kb on + strand at 681.800 kb on - strand at 681.843 kb on - strand at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.869 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 681.872 kb on - strand, within HMPREF1078_RS02790 at 682.177 kb on - strand at 682.177 kb on - strand at 682.204 kb on + strand, within HMPREF1078_RS02795 at 682.204 kb on + strand, within HMPREF1078_RS02795 at 682.205 kb on - strand, within HMPREF1078_RS02795 at 682.233 kb on + strand, within HMPREF1078_RS02795 at 682.234 kb on - strand, within HMPREF1078_RS02795 at 682.276 kb on - strand, within HMPREF1078_RS02795 at 682.276 kb on - strand, within HMPREF1078_RS02795 at 682.284 kb on + strand, within HMPREF1078_RS02795 at 682.284 kb on + strand, within HMPREF1078_RS02795 at 682.304 kb on + strand, within HMPREF1078_RS02795 at 682.342 kb on - strand, within HMPREF1078_RS02795 at 682.426 kb on - strand, within HMPREF1078_RS02795 at 682.431 kb on - strand, within HMPREF1078_RS02795 at 682.435 kb on - strand, within HMPREF1078_RS02795 at 682.436 kb on + strand, within HMPREF1078_RS02795 at 682.470 kb on + strand at 682.476 kb on + strand at 682.477 kb on - strand at 682.477 kb on - strand at 682.545 kb on - strand at 682.557 kb on + strand at 682.589 kb on + strand at 682.590 kb on - strand at 682.624 kb on + strand at 682.624 kb on + strand at 682.674 kb on + strand at 682.691 kb on + strand at 682.721 kb on + strand at 682.751 kb on - strand at 682.801 kb on - strand, within HMPREF1078_RS02800 at 682.801 kb on - strand, within HMPREF1078_RS02800 at 682.825 kb on - strand, within HMPREF1078_RS02800 at 682.855 kb on - strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.885 kb on + strand, within HMPREF1078_RS02800 at 682.886 kb on - strand, within HMPREF1078_RS02800 at 682.888 kb on - strand, within HMPREF1078_RS02800 at 682.901 kb on - strand, within HMPREF1078_RS02800 at 682.911 kb on + strand, within HMPREF1078_RS02800 at 682.923 kb on + strand, within HMPREF1078_RS02800 at 682.924 kb on - strand, within HMPREF1078_RS02800 at 682.937 kb on + strand, within HMPREF1078_RS02800 at 682.938 kb on - strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.941 kb on + strand, within HMPREF1078_RS02800 at 682.942 kb on - strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.943 kb on + strand, within HMPREF1078_RS02800 at 682.944 kb on - strand, within HMPREF1078_RS02800 at 682.987 kb on + strand, within HMPREF1078_RS02800 at 682.987 kb on + strand, within HMPREF1078_RS02800 at 683.005 kb on + strand, within HMPREF1078_RS02800 at 683.052 kb on + strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800 at 683.053 kb on - strand, within HMPREF1078_RS02800
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) remove 681,373 + HMPREF1078_RS02785 0.88 -1.4 681,384 + HMPREF1078_RS02785 0.89 +0.4 681,384 + HMPREF1078_RS02785 0.89 -0.2 681,418 - -0.2 681,418 - +0.2 681,473 + -0.3 681,625 - -0.6 681,694 - +0.8 681,694 - +1.0 681,696 + -1.2 681,697 - -0.2 681,697 - -0.4 681,697 - -1.2 681,711 + +0.1 681,741 - -0.3 681,779 + +0.2 681,783 - -0.8 681,788 - +0.1 681,795 + +0.7 681,795 + -1.8 681,795 + +0.1 681,799 + +0.1 681,800 - -1.3 681,843 - +0.3 681,869 - HMPREF1078_RS02790 0.15 -1.1 681,869 - HMPREF1078_RS02790 0.15 -1.2 681,869 - HMPREF1078_RS02790 0.15 -1.7 681,872 - HMPREF1078_RS02790 0.16 -0.6 681,872 - HMPREF1078_RS02790 0.16 -0.7 681,872 - HMPREF1078_RS02790 0.16 +0.0 682,177 - -2.0 682,177 - -0.1 682,204 + HMPREF1078_RS02795 0.14 +0.1 682,204 + HMPREF1078_RS02795 0.14 -0.2 682,205 - HMPREF1078_RS02795 0.14 -1.2 682,233 + HMPREF1078_RS02795 0.23 -1.8 682,234 - HMPREF1078_RS02795 0.24 -0.2 682,276 - HMPREF1078_RS02795 0.37 +0.4 682,276 - HMPREF1078_RS02795 0.37 -0.9 682,284 + HMPREF1078_RS02795 0.39 +0.4 682,284 + HMPREF1078_RS02795 0.39 +1.4 682,304 + HMPREF1078_RS02795 0.46 +1.8 682,342 - HMPREF1078_RS02795 0.58 -0.9 682,426 - HMPREF1078_RS02795 0.84 +1.2 682,431 - HMPREF1078_RS02795 0.86 -0.1 682,435 - HMPREF1078_RS02795 0.87 +1.3 682,436 + HMPREF1078_RS02795 0.87 -0.0 682,470 + -1.5 682,476 + +0.2 682,477 - +0.5 682,477 - -0.4 682,545 - -0.6 682,557 + +0.7 682,589 + +1.2 682,590 - -0.5 682,624 + -1.2 682,624 + +1.1 682,674 + -1.0 682,691 + -0.6 682,721 + +0.1 682,751 - +1.1 682,801 - HMPREF1078_RS02800 0.17 -0.1 682,801 - HMPREF1078_RS02800 0.17 -0.3 682,825 - HMPREF1078_RS02800 0.24 +0.5 682,855 - HMPREF1078_RS02800 0.31 -1.9 682,885 + HMPREF1078_RS02800 0.39 +0.3 682,885 + HMPREF1078_RS02800 0.39 -0.7 682,885 + HMPREF1078_RS02800 0.39 -0.8 682,885 + HMPREF1078_RS02800 0.39 +0.0 682,886 - HMPREF1078_RS02800 0.40 -2.0 682,888 - HMPREF1078_RS02800 0.40 +0.4 682,901 - HMPREF1078_RS02800 0.44 +0.8 682,911 + HMPREF1078_RS02800 0.46 -1.2 682,923 + HMPREF1078_RS02800 0.49 +0.7 682,924 - HMPREF1078_RS02800 0.50 +0.7 682,937 + HMPREF1078_RS02800 0.53 +1.3 682,938 - HMPREF1078_RS02800 0.53 +0.2 682,941 + HMPREF1078_RS02800 0.54 -1.8 682,941 + HMPREF1078_RS02800 0.54 -0.5 682,941 + HMPREF1078_RS02800 0.54 -1.1 682,942 - HMPREF1078_RS02800 0.54 -1.6 682,943 + HMPREF1078_RS02800 0.55 +0.6 682,943 + HMPREF1078_RS02800 0.55 +0.4 682,943 + HMPREF1078_RS02800 0.55 +0.1 682,943 + HMPREF1078_RS02800 0.55 +0.3 682,943 + HMPREF1078_RS02800 0.55 +0.7 682,943 + HMPREF1078_RS02800 0.55 +0.7 682,944 - HMPREF1078_RS02800 0.55 -0.7 682,987 + HMPREF1078_RS02800 0.66 +0.5 682,987 + HMPREF1078_RS02800 0.66 -0.5 683,005 + HMPREF1078_RS02800 0.71 -1.8 683,052 + HMPREF1078_RS02800 0.84 -1.9 683,053 - HMPREF1078_RS02800 0.84 -1.4 683,053 - HMPREF1078_RS02800 0.84 +0.4 683,053 - HMPREF1078_RS02800 0.84 +0.3 683,053 - HMPREF1078_RS02800 0.84 -0.6
Or see this region's nucleotide sequence