Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JOY50_RS00730 and JOY50_RS00735 are separated by 402 nucleotides JOY50_RS00735 and JOY50_RS00740 are separated by 403 nucleotides
JOY50_RS00730: JOY50_RS00730 - flagellin, at 166,926 to 168,623
_RS00730
JOY50_RS00735: JOY50_RS00735 - ketoacyl-ACP synthase III, at 169,026 to 169,955
_RS00735
JOY50_RS00740: JOY50_RS00740 - flagellar hook-associated protein 3, at 170,359 to 171,924
_RS00740
Position (kb) 169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.026 kb on - strand, within JOY50_RS00730 at 168.065 kb on - strand, within JOY50_RS00730 at 168.077 kb on - strand, within JOY50_RS00730 at 168.186 kb on - strand, within JOY50_RS00730 at 168.187 kb on - strand, within JOY50_RS00730 at 168.190 kb on + strand, within JOY50_RS00730 at 168.213 kb on - strand, within JOY50_RS00730 at 168.224 kb on - strand, within JOY50_RS00730 at 168.272 kb on - strand, within JOY50_RS00730 at 168.320 kb on - strand, within JOY50_RS00730 at 168.320 kb on - strand, within JOY50_RS00730 at 168.362 kb on - strand, within JOY50_RS00730 at 168.364 kb on - strand, within JOY50_RS00730 at 168.401 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.453 kb on - strand, within JOY50_RS00730 at 168.531 kb on - strand at 168.554 kb on - strand at 168.584 kb on - strand at 168.593 kb on - strand at 168.594 kb on + strand at 168.602 kb on - strand at 169.023 kb on - strand at 169.025 kb on - strand at 169.025 kb on - strand at 169.025 kb on - strand at 169.065 kb on - strand at 169.151 kb on - strand, within JOY50_RS00735 at 169.178 kb on - strand, within JOY50_RS00735 at 169.191 kb on + strand, within JOY50_RS00735 at 169.247 kb on - strand, within JOY50_RS00735 at 169.247 kb on - strand, within JOY50_RS00735 at 169.247 kb on - strand, within JOY50_RS00735 at 169.247 kb on - strand, within JOY50_RS00735 at 169.247 kb on - strand, within JOY50_RS00735 at 169.326 kb on - strand, within JOY50_RS00735 at 169.326 kb on - strand, within JOY50_RS00735 at 169.326 kb on - strand, within JOY50_RS00735 at 169.336 kb on - strand, within JOY50_RS00735 at 169.370 kb on - strand, within JOY50_RS00735 at 169.371 kb on - strand, within JOY50_RS00735 at 169.406 kb on - strand, within JOY50_RS00735 at 169.484 kb on + strand, within JOY50_RS00735 at 169.492 kb on - strand, within JOY50_RS00735 at 169.510 kb on - strand, within JOY50_RS00735 at 169.510 kb on - strand, within JOY50_RS00735 at 169.545 kb on - strand, within JOY50_RS00735 at 169.589 kb on + strand, within JOY50_RS00735 at 169.597 kb on - strand, within JOY50_RS00735 at 169.653 kb on - strand, within JOY50_RS00735 at 169.663 kb on - strand, within JOY50_RS00735 at 169.673 kb on - strand, within JOY50_RS00735 at 169.713 kb on - strand, within JOY50_RS00735 at 169.745 kb on - strand, within JOY50_RS00735 at 169.762 kb on - strand, within JOY50_RS00735 at 169.762 kb on - strand, within JOY50_RS00735 at 169.784 kb on - strand, within JOY50_RS00735 at 169.797 kb on - strand, within JOY50_RS00735 at 169.797 kb on - strand, within JOY50_RS00735 at 169.807 kb on - strand, within JOY50_RS00735 at 169.868 kb on - strand at 169.874 kb on - strand at 169.913 kb on - strand at 169.913 kb on - strand at 169.913 kb on - strand at 170.059 kb on - strand at 170.097 kb on - strand at 170.219 kb on + strand at 170.365 kb on - strand at 170.430 kb on + strand at 170.434 kb on - strand at 170.438 kb on - strand at 170.438 kb on - strand at 170.438 kb on - strand at 170.568 kb on - strand, within JOY50_RS00740 at 170.568 kb on - strand, within JOY50_RS00740 at 170.612 kb on - strand, within JOY50_RS00740 at 170.640 kb on - strand, within JOY50_RS00740 at 170.657 kb on - strand, within JOY50_RS00740 at 170.699 kb on - strand, within JOY50_RS00740 at 170.699 kb on - strand, within JOY50_RS00740 at 170.699 kb on - strand, within JOY50_RS00740 at 170.699 kb on - strand, within JOY50_RS00740 at 170.746 kb on + strand, within JOY50_RS00740 at 170.751 kb on - strand, within JOY50_RS00740 at 170.822 kb on - strand, within JOY50_RS00740 at 170.852 kb on + strand, within JOY50_RS00740 at 170.857 kb on - strand, within JOY50_RS00740 at 170.860 kb on - strand, within JOY50_RS00740 at 170.860 kb on - strand, within JOY50_RS00740 at 170.927 kb on - strand, within JOY50_RS00740
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X remove 168,026 - JOY50_RS00730 0.65 -0.4 168,065 - JOY50_RS00730 0.67 -0.2 168,077 - JOY50_RS00730 0.68 -0.1 168,186 - JOY50_RS00730 0.74 -0.8 168,187 - JOY50_RS00730 0.74 -0.9 168,190 + JOY50_RS00730 0.74 -0.2 168,213 - JOY50_RS00730 0.76 +0.1 168,224 - JOY50_RS00730 0.76 -0.5 168,272 - JOY50_RS00730 0.79 +0.5 168,320 - JOY50_RS00730 0.82 -0.5 168,320 - JOY50_RS00730 0.82 +0.2 168,362 - JOY50_RS00730 0.85 -0.4 168,364 - JOY50_RS00730 0.85 -0.4 168,401 - JOY50_RS00730 0.87 +0.5 168,453 - JOY50_RS00730 0.90 +0.2 168,453 - JOY50_RS00730 0.90 -0.3 168,453 - JOY50_RS00730 0.90 -0.3 168,453 - JOY50_RS00730 0.90 +1.2 168,453 - JOY50_RS00730 0.90 +0.8 168,453 - JOY50_RS00730 0.90 -0.0 168,453 - JOY50_RS00730 0.90 -0.4 168,531 - -0.7 168,554 - -0.1 168,584 - +0.1 168,593 - +0.5 168,594 + +0.2 168,602 - +0.3 169,023 - -0.0 169,025 - +0.2 169,025 - +0.3 169,025 - -0.1 169,065 - -0.2 169,151 - JOY50_RS00735 0.13 -1.5 169,178 - JOY50_RS00735 0.16 -0.5 169,191 + JOY50_RS00735 0.18 -1.0 169,247 - JOY50_RS00735 0.24 -0.5 169,247 - JOY50_RS00735 0.24 -1.0 169,247 - JOY50_RS00735 0.24 -1.4 169,247 - JOY50_RS00735 0.24 -0.0 169,247 - JOY50_RS00735 0.24 -1.5 169,326 - JOY50_RS00735 0.32 -0.6 169,326 - JOY50_RS00735 0.32 -1.7 169,326 - JOY50_RS00735 0.32 -0.6 169,336 - JOY50_RS00735 0.33 -0.7 169,370 - JOY50_RS00735 0.37 -1.4 169,371 - JOY50_RS00735 0.37 +1.2 169,406 - JOY50_RS00735 0.41 -0.3 169,484 + JOY50_RS00735 0.49 -2.2 169,492 - JOY50_RS00735 0.50 -0.5 169,510 - JOY50_RS00735 0.52 -0.3 169,510 - JOY50_RS00735 0.52 -0.9 169,545 - JOY50_RS00735 0.56 -0.1 169,589 + JOY50_RS00735 0.61 -2.5 169,597 - JOY50_RS00735 0.61 -3.4 169,653 - JOY50_RS00735 0.67 -0.0 169,663 - JOY50_RS00735 0.68 -1.0 169,673 - JOY50_RS00735 0.70 -0.4 169,713 - JOY50_RS00735 0.74 -0.8 169,745 - JOY50_RS00735 0.77 -1.0 169,762 - JOY50_RS00735 0.79 -0.6 169,762 - JOY50_RS00735 0.79 -0.4 169,784 - JOY50_RS00735 0.82 -1.0 169,797 - JOY50_RS00735 0.83 -0.1 169,797 - JOY50_RS00735 0.83 -0.5 169,807 - JOY50_RS00735 0.84 +0.3 169,868 - -1.2 169,874 - -0.6 169,913 - -1.0 169,913 - +0.9 169,913 - -0.5 170,059 - -0.7 170,097 - +0.7 170,219 + -0.1 170,365 - +0.4 170,430 + -1.3 170,434 - -0.2 170,438 - +0.0 170,438 - -0.0 170,438 - -0.3 170,568 - JOY50_RS00740 0.13 -0.7 170,568 - JOY50_RS00740 0.13 -0.0 170,612 - JOY50_RS00740 0.16 +0.2 170,640 - JOY50_RS00740 0.18 -0.7 170,657 - JOY50_RS00740 0.19 +0.4 170,699 - JOY50_RS00740 0.22 -1.2 170,699 - JOY50_RS00740 0.22 -0.3 170,699 - JOY50_RS00740 0.22 -0.4 170,699 - JOY50_RS00740 0.22 +0.1 170,746 + JOY50_RS00740 0.25 -0.9 170,751 - JOY50_RS00740 0.25 -0.4 170,822 - JOY50_RS00740 0.30 +0.2 170,852 + JOY50_RS00740 0.31 +0.5 170,857 - JOY50_RS00740 0.32 -0.8 170,860 - JOY50_RS00740 0.32 +0.2 170,860 - JOY50_RS00740 0.32 +0.7 170,927 - JOY50_RS00740 0.36 +0.5
Or see this region's nucleotide sequence