Experiment: ABB 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12440 and HMPREF1078_RS12445 are separated by 76 nucleotides HMPREF1078_RS12445 and HMPREF1078_RS12450 are separated by 378 nucleotides
HMPREF1078_RS12440: HMPREF1078_RS12440 - O-antigen ligase family protein, at 485,353 to 487,011
_RS12440
HMPREF1078_RS12445: HMPREF1078_RS12445 - heparinase II/III family protein, at 487,088 to 488,917
_RS12445
HMPREF1078_RS12450: HMPREF1078_RS12450 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit, at 489,296 to 492,514
_RS12450
Position (kb) 487
488
489 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 486.096 kb on + strand, within HMPREF1078_RS12440 at 486.096 kb on + strand, within HMPREF1078_RS12440 at 486.097 kb on - strand, within HMPREF1078_RS12440 at 486.118 kb on + strand, within HMPREF1078_RS12440 at 486.119 kb on - strand, within HMPREF1078_RS12440 at 486.197 kb on - strand, within HMPREF1078_RS12440 at 486.211 kb on + strand, within HMPREF1078_RS12440 at 486.352 kb on + strand, within HMPREF1078_RS12440 at 486.352 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.408 kb on + strand, within HMPREF1078_RS12440 at 486.409 kb on - strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.410 kb on + strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.411 kb on - strand, within HMPREF1078_RS12440 at 486.432 kb on + strand, within HMPREF1078_RS12440 at 486.464 kb on - strand, within HMPREF1078_RS12440 at 486.466 kb on - strand, within HMPREF1078_RS12440 at 486.489 kb on + strand, within HMPREF1078_RS12440 at 486.490 kb on - strand, within HMPREF1078_RS12440 at 486.490 kb on - strand, within HMPREF1078_RS12440 at 486.505 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.523 kb on + strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.524 kb on - strand, within HMPREF1078_RS12440 at 486.526 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.528 kb on + strand, within HMPREF1078_RS12440 at 486.529 kb on - strand, within HMPREF1078_RS12440 at 486.532 kb on + strand, within HMPREF1078_RS12440 at 486.532 kb on + strand, within HMPREF1078_RS12440 at 486.535 kb on - strand, within HMPREF1078_RS12440 at 486.560 kb on + strand, within HMPREF1078_RS12440 at 486.561 kb on - strand, within HMPREF1078_RS12440 at 486.563 kb on - strand, within HMPREF1078_RS12440 at 486.568 kb on - strand, within HMPREF1078_RS12440 at 486.578 kb on - strand, within HMPREF1078_RS12440 at 486.641 kb on + strand, within HMPREF1078_RS12440 at 486.642 kb on - strand, within HMPREF1078_RS12440 at 486.643 kb on + strand, within HMPREF1078_RS12440 at 486.667 kb on - strand, within HMPREF1078_RS12440 at 486.714 kb on - strand, within HMPREF1078_RS12440 at 486.737 kb on + strand, within HMPREF1078_RS12440 at 486.738 kb on - strand, within HMPREF1078_RS12440 at 486.738 kb on - strand, within HMPREF1078_RS12440 at 486.739 kb on + strand, within HMPREF1078_RS12440 at 486.739 kb on + strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.740 kb on - strand, within HMPREF1078_RS12440 at 486.742 kb on + strand, within HMPREF1078_RS12440 at 486.743 kb on - strand, within HMPREF1078_RS12440 at 486.797 kb on - strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.835 kb on + strand, within HMPREF1078_RS12440 at 486.836 kb on - strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.837 kb on + strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.838 kb on - strand, within HMPREF1078_RS12440 at 486.841 kb on + strand, within HMPREF1078_RS12440 at 486.842 kb on - strand, within HMPREF1078_RS12440 at 486.849 kb on - strand at 486.862 kb on + strand at 486.862 kb on + strand at 486.862 kb on + strand at 486.965 kb on - strand at 487.030 kb on + strand at 487.076 kb on + strand at 487.082 kb on - strand at 487.086 kb on + strand at 487.087 kb on - strand at 487.089 kb on + strand at 487.191 kb on + strand at 487.191 kb on + strand at 487.192 kb on - strand at 487.192 kb on - strand at 487.192 kb on - strand at 487.196 kb on - strand at 487.309 kb on + strand, within HMPREF1078_RS12445 at 487.310 kb on - strand, within HMPREF1078_RS12445 at 487.439 kb on - strand, within HMPREF1078_RS12445 at 487.552 kb on + strand, within HMPREF1078_RS12445 at 487.567 kb on + strand, within HMPREF1078_RS12445 at 487.622 kb on + strand, within HMPREF1078_RS12445 at 487.623 kb on - strand, within HMPREF1078_RS12445 at 487.648 kb on - strand, within HMPREF1078_RS12445 at 487.803 kb on - strand, within HMPREF1078_RS12445 at 487.878 kb on + strand, within HMPREF1078_RS12445 at 487.879 kb on - strand, within HMPREF1078_RS12445 at 487.979 kb on + strand, within HMPREF1078_RS12445 at 488.098 kb on + strand, within HMPREF1078_RS12445 at 488.099 kb on - strand, within HMPREF1078_RS12445 at 488.099 kb on - strand, within HMPREF1078_RS12445 at 488.099 kb on - strand, within HMPREF1078_RS12445 at 488.159 kb on + strand, within HMPREF1078_RS12445 at 488.194 kb on - strand, within HMPREF1078_RS12445 at 488.194 kb on - strand, within HMPREF1078_RS12445 at 488.198 kb on - strand, within HMPREF1078_RS12445 at 488.200 kb on - strand, within HMPREF1078_RS12445 at 488.212 kb on - strand, within HMPREF1078_RS12445 at 488.229 kb on + strand, within HMPREF1078_RS12445 at 488.230 kb on - strand, within HMPREF1078_RS12445 at 488.261 kb on - strand, within HMPREF1078_RS12445 at 488.323 kb on - strand, within HMPREF1078_RS12445 at 488.382 kb on + strand, within HMPREF1078_RS12445 at 488.383 kb on - strand, within HMPREF1078_RS12445 at 488.432 kb on + strand, within HMPREF1078_RS12445 at 488.433 kb on - strand, within HMPREF1078_RS12445 at 488.632 kb on + strand, within HMPREF1078_RS12445 at 488.683 kb on + strand, within HMPREF1078_RS12445 at 488.685 kb on + strand, within HMPREF1078_RS12445 at 488.685 kb on + strand, within HMPREF1078_RS12445 at 488.686 kb on - strand, within HMPREF1078_RS12445 at 488.686 kb on - strand, within HMPREF1078_RS12445 at 488.737 kb on + strand at 488.810 kb on + strand at 488.811 kb on - strand at 488.837 kb on - strand at 488.902 kb on - strand at 488.912 kb on - strand at 488.915 kb on - strand at 488.930 kb on - strand at 489.047 kb on - strand at 489.104 kb on + strand at 489.104 kb on + strand at 489.105 kb on - strand at 489.105 kb on - strand at 489.105 kb on - strand at 489.107 kb on - strand at 489.110 kb on + strand at 489.111 kb on - strand at 489.132 kb on + strand at 489.134 kb on + strand at 489.134 kb on + strand at 489.134 kb on + strand at 489.134 kb on + strand at 489.134 kb on + strand at 489.134 kb on + strand at 489.135 kb on - strand at 489.135 kb on - strand at 489.135 kb on - strand at 489.185 kb on + strand at 489.187 kb on + strand at 489.187 kb on + strand at 489.188 kb on - strand at 489.188 kb on - strand at 489.188 kb on - strand at 489.188 kb on - strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.189 kb on + strand at 489.190 kb on - strand at 489.190 kb on - strand at 489.190 kb on - strand at 489.199 kb on + strand at 489.204 kb on - strand at 489.209 kb on + strand at 489.253 kb on - strand at 489.274 kb on - strand at 489.292 kb on + strand at 489.292 kb on + strand at 489.292 kb on + strand at 489.292 kb on + strand at 489.296 kb on - strand at 489.296 kb on - strand at 489.374 kb on + strand at 489.426 kb on + strand at 489.426 kb on + strand at 489.427 kb on - strand at 489.485 kb on + strand at 489.485 kb on + strand at 489.506 kb on + strand at 489.506 kb on + strand at 489.506 kb on + strand at 489.507 kb on - strand at 489.599 kb on + strand at 489.600 kb on - strand at 489.600 kb on - strand at 489.623 kb on + strand, within HMPREF1078_RS12450 at 489.624 kb on - strand, within HMPREF1078_RS12450 at 489.666 kb on - strand, within HMPREF1078_RS12450 at 489.708 kb on + strand, within HMPREF1078_RS12450 at 489.708 kb on + strand, within HMPREF1078_RS12450 at 489.708 kb on + strand, within HMPREF1078_RS12450 at 489.709 kb on - strand, within HMPREF1078_RS12450 at 489.714 kb on + strand, within HMPREF1078_RS12450 at 489.770 kb on + strand, within HMPREF1078_RS12450 at 489.832 kb on + strand, within HMPREF1078_RS12450 at 489.833 kb on - strand, within HMPREF1078_RS12450 at 489.859 kb on + strand, within HMPREF1078_RS12450 at 489.859 kb on + strand, within HMPREF1078_RS12450 at 489.860 kb on - strand, within HMPREF1078_RS12450
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) remove 486,096 + HMPREF1078_RS12440 0.45 -0.8 486,096 + HMPREF1078_RS12440 0.45 -0.3 486,097 - HMPREF1078_RS12440 0.45 -1.0 486,118 + HMPREF1078_RS12440 0.46 -0.5 486,119 - HMPREF1078_RS12440 0.46 -0.3 486,197 - HMPREF1078_RS12440 0.51 -0.0 486,211 + HMPREF1078_RS12440 0.52 +0.1 486,352 + HMPREF1078_RS12440 0.60 +0.6 486,352 + HMPREF1078_RS12440 0.60 +0.3 486,408 + HMPREF1078_RS12440 0.64 +0.1 486,408 + HMPREF1078_RS12440 0.64 -1.3 486,408 + HMPREF1078_RS12440 0.64 -0.7 486,408 + HMPREF1078_RS12440 0.64 +0.1 486,409 - HMPREF1078_RS12440 0.64 +0.4 486,410 + HMPREF1078_RS12440 0.64 -0.7 486,410 + HMPREF1078_RS12440 0.64 +0.2 486,410 + HMPREF1078_RS12440 0.64 -0.5 486,410 + HMPREF1078_RS12440 0.64 +0.5 486,410 + HMPREF1078_RS12440 0.64 -1.0 486,410 + HMPREF1078_RS12440 0.64 +0.3 486,410 + HMPREF1078_RS12440 0.64 -1.0 486,411 - HMPREF1078_RS12440 0.64 +0.5 486,411 - HMPREF1078_RS12440 0.64 +0.3 486,411 - HMPREF1078_RS12440 0.64 +0.4 486,411 - HMPREF1078_RS12440 0.64 -1.9 486,432 + HMPREF1078_RS12440 0.65 +1.9 486,464 - HMPREF1078_RS12440 0.67 +0.6 486,466 - HMPREF1078_RS12440 0.67 +0.3 486,489 + HMPREF1078_RS12440 0.68 +0.6 486,490 - HMPREF1078_RS12440 0.69 -0.5 486,490 - HMPREF1078_RS12440 0.69 +0.0 486,505 + HMPREF1078_RS12440 0.69 +0.6 486,523 + HMPREF1078_RS12440 0.71 +0.1 486,523 + HMPREF1078_RS12440 0.71 -0.3 486,523 + HMPREF1078_RS12440 0.71 +1.9 486,523 + HMPREF1078_RS12440 0.71 +0.0 486,524 - HMPREF1078_RS12440 0.71 -1.9 486,524 - HMPREF1078_RS12440 0.71 +0.6 486,524 - HMPREF1078_RS12440 0.71 -0.3 486,526 + HMPREF1078_RS12440 0.71 -0.9 486,528 + HMPREF1078_RS12440 0.71 +0.4 486,528 + HMPREF1078_RS12440 0.71 -0.6 486,528 + HMPREF1078_RS12440 0.71 -1.0 486,529 - HMPREF1078_RS12440 0.71 +0.2 486,532 + HMPREF1078_RS12440 0.71 -0.7 486,532 + HMPREF1078_RS12440 0.71 -0.0 486,535 - HMPREF1078_RS12440 0.71 +0.9 486,560 + HMPREF1078_RS12440 0.73 +0.4 486,561 - HMPREF1078_RS12440 0.73 -1.3 486,563 - HMPREF1078_RS12440 0.73 -0.1 486,568 - HMPREF1078_RS12440 0.73 +0.0 486,578 - HMPREF1078_RS12440 0.74 +0.2 486,641 + HMPREF1078_RS12440 0.78 +0.2 486,642 - HMPREF1078_RS12440 0.78 -0.5 486,643 + HMPREF1078_RS12440 0.78 -0.6 486,667 - HMPREF1078_RS12440 0.79 +0.2 486,714 - HMPREF1078_RS12440 0.82 -0.1 486,737 + HMPREF1078_RS12440 0.83 +0.2 486,738 - HMPREF1078_RS12440 0.83 +0.3 486,738 - HMPREF1078_RS12440 0.83 +0.6 486,739 + HMPREF1078_RS12440 0.84 -1.5 486,739 + HMPREF1078_RS12440 0.84 +0.0 486,740 - HMPREF1078_RS12440 0.84 -0.0 486,740 - HMPREF1078_RS12440 0.84 +0.3 486,740 - HMPREF1078_RS12440 0.84 -0.1 486,742 + HMPREF1078_RS12440 0.84 -0.8 486,743 - HMPREF1078_RS12440 0.84 +0.8 486,797 - HMPREF1078_RS12440 0.87 -0.3 486,835 + HMPREF1078_RS12440 0.89 +0.6 486,835 + HMPREF1078_RS12440 0.89 -0.1 486,835 + HMPREF1078_RS12440 0.89 +0.4 486,836 - HMPREF1078_RS12440 0.89 +0.9 486,837 + HMPREF1078_RS12440 0.89 +0.3 486,837 + HMPREF1078_RS12440 0.89 -0.5 486,837 + HMPREF1078_RS12440 0.89 +0.1 486,837 + HMPREF1078_RS12440 0.89 -0.4 486,837 + HMPREF1078_RS12440 0.89 +0.3 486,838 - HMPREF1078_RS12440 0.90 -2.2 486,838 - HMPREF1078_RS12440 0.90 +1.0 486,838 - HMPREF1078_RS12440 0.90 +0.5 486,838 - HMPREF1078_RS12440 0.90 +0.0 486,841 + HMPREF1078_RS12440 0.90 +0.6 486,842 - HMPREF1078_RS12440 0.90 +0.2 486,849 - +0.2 486,862 + +0.0 486,862 + +0.1 486,862 + +0.9 486,965 - +0.1 487,030 + +0.9 487,076 + +0.6 487,082 - -0.4 487,086 + +0.4 487,087 - -0.0 487,089 + -2.1 487,191 + +0.1 487,191 + -0.2 487,192 - +0.1 487,192 - +0.3 487,192 - +0.1 487,196 - -0.7 487,309 + HMPREF1078_RS12445 0.12 -0.1 487,310 - HMPREF1078_RS12445 0.12 +0.1 487,439 - HMPREF1078_RS12445 0.19 -1.9 487,552 + HMPREF1078_RS12445 0.25 -0.0 487,567 + HMPREF1078_RS12445 0.26 +0.5 487,622 + HMPREF1078_RS12445 0.29 +0.2 487,623 - HMPREF1078_RS12445 0.29 +0.2 487,648 - HMPREF1078_RS12445 0.31 +0.3 487,803 - HMPREF1078_RS12445 0.39 -0.8 487,878 + HMPREF1078_RS12445 0.43 -0.0 487,879 - HMPREF1078_RS12445 0.43 +0.6 487,979 + HMPREF1078_RS12445 0.49 +0.0 488,098 + HMPREF1078_RS12445 0.55 +0.1 488,099 - HMPREF1078_RS12445 0.55 -0.5 488,099 - HMPREF1078_RS12445 0.55 -0.0 488,099 - HMPREF1078_RS12445 0.55 -0.3 488,159 + HMPREF1078_RS12445 0.59 -0.1 488,194 - HMPREF1078_RS12445 0.60 -0.5 488,194 - HMPREF1078_RS12445 0.60 -0.4 488,198 - HMPREF1078_RS12445 0.61 +0.1 488,200 - HMPREF1078_RS12445 0.61 +0.2 488,212 - HMPREF1078_RS12445 0.61 -0.3 488,229 + HMPREF1078_RS12445 0.62 -0.2 488,230 - HMPREF1078_RS12445 0.62 +0.3 488,261 - HMPREF1078_RS12445 0.64 +0.1 488,323 - HMPREF1078_RS12445 0.67 -0.0 488,382 + HMPREF1078_RS12445 0.71 +0.6 488,383 - HMPREF1078_RS12445 0.71 +0.6 488,432 + HMPREF1078_RS12445 0.73 +0.2 488,433 - HMPREF1078_RS12445 0.73 -1.1 488,632 + HMPREF1078_RS12445 0.84 +1.9 488,683 + HMPREF1078_RS12445 0.87 -1.1 488,685 + HMPREF1078_RS12445 0.87 +0.4 488,685 + HMPREF1078_RS12445 0.87 -0.6 488,686 - HMPREF1078_RS12445 0.87 +0.2 488,686 - HMPREF1078_RS12445 0.87 +0.1 488,737 + +0.1 488,810 + +1.0 488,811 - -1.2 488,837 - +0.1 488,902 - -0.2 488,912 - -0.3 488,915 - +0.2 488,930 - +0.7 489,047 - +1.6 489,104 + -0.4 489,104 + +0.3 489,105 - -1.0 489,105 - -0.1 489,105 - -0.5 489,107 - -0.3 489,110 + -0.2 489,111 - -1.4 489,132 + -0.5 489,134 + +0.9 489,134 + +0.5 489,134 + -0.3 489,134 + -1.1 489,134 + -0.9 489,134 + +0.2 489,135 - -0.3 489,135 - -0.5 489,135 - +0.1 489,185 + +0.0 489,187 + -1.2 489,187 + +0.7 489,188 - +0.1 489,188 - -0.7 489,188 - +0.3 489,188 - -0.1 489,189 + +0.0 489,189 + +0.2 489,189 + +0.2 489,189 + +0.5 489,189 + -0.3 489,189 + -0.9 489,190 - -0.2 489,190 - -1.9 489,190 - -1.8 489,199 + -1.3 489,204 - -0.9 489,209 + -0.5 489,253 - +2.1 489,274 - +0.4 489,292 + -0.3 489,292 + -1.8 489,292 + -0.0 489,292 + +0.2 489,296 - -0.7 489,296 - -1.7 489,374 + -0.3 489,426 + +1.2 489,426 + +0.5 489,427 - -0.7 489,485 + +0.5 489,485 + -2.0 489,506 + -1.0 489,506 + -0.9 489,506 + -0.4 489,507 - -0.0 489,599 + -1.0 489,600 - +1.3 489,600 - +2.6 489,623 + HMPREF1078_RS12450 0.10 -1.7 489,624 - HMPREF1078_RS12450 0.10 +0.3 489,666 - HMPREF1078_RS12450 0.11 +0.7 489,708 + HMPREF1078_RS12450 0.13 +0.2 489,708 + HMPREF1078_RS12450 0.13 +1.0 489,708 + HMPREF1078_RS12450 0.13 -1.1 489,709 - HMPREF1078_RS12450 0.13 +0.5 489,714 + HMPREF1078_RS12450 0.13 -0.1 489,770 + HMPREF1078_RS12450 0.15 -0.7 489,832 + HMPREF1078_RS12450 0.17 -2.2 489,833 - HMPREF1078_RS12450 0.17 -0.3 489,859 + HMPREF1078_RS12450 0.17 -3.8 489,859 + HMPREF1078_RS12450 0.17 -0.7 489,860 - HMPREF1078_RS12450 0.18 -0.8
Or see this region's nucleotide sequence