Experiment: ABB 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06645 and HMPREF1078_RS06650 are separated by 73 nucleotides HMPREF1078_RS06650 and HMPREF1078_RS06655 are separated by 285 nucleotides
HMPREF1078_RS06645: HMPREF1078_RS06645 - RNA polymerase sigma-70 factor, at 718,068 to 718,655
_RS06645
HMPREF1078_RS06650: HMPREF1078_RS06650 - FecR family protein, at 718,729 to 719,706
_RS06650
HMPREF1078_RS06655: HMPREF1078_RS06655 - TonB-dependent receptor, at 719,992 to 723,408
_RS06655
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 717.743 kb on + strand at 717.780 kb on - strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.783 kb on + strand at 717.784 kb on - strand at 717.784 kb on - strand at 717.792 kb on - strand at 717.798 kb on + strand at 717.825 kb on - strand at 717.895 kb on - strand at 717.905 kb on - strand at 717.916 kb on - strand at 717.926 kb on + strand at 717.983 kb on + strand at 717.983 kb on + strand at 717.984 kb on - strand at 717.984 kb on - strand at 717.992 kb on + strand at 718.001 kb on - strand at 718.028 kb on + strand at 718.028 kb on + strand at 718.028 kb on + strand at 718.029 kb on - strand at 718.029 kb on - strand at 718.029 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.063 kb on - strand at 718.067 kb on + strand at 718.068 kb on - strand at 718.068 kb on - strand at 718.249 kb on + strand, within HMPREF1078_RS06645 at 718.250 kb on - strand, within HMPREF1078_RS06645 at 718.263 kb on - strand, within HMPREF1078_RS06645 at 718.263 kb on - strand, within HMPREF1078_RS06645 at 718.295 kb on + strand, within HMPREF1078_RS06645 at 718.313 kb on + strand, within HMPREF1078_RS06645 at 718.412 kb on + strand, within HMPREF1078_RS06645 at 718.413 kb on - strand, within HMPREF1078_RS06645 at 718.413 kb on - strand, within HMPREF1078_RS06645 at 718.447 kb on + strand, within HMPREF1078_RS06645 at 718.516 kb on + strand, within HMPREF1078_RS06645 at 718.541 kb on + strand, within HMPREF1078_RS06645 at 718.575 kb on - strand, within HMPREF1078_RS06645 at 718.575 kb on - strand, within HMPREF1078_RS06645 at 718.628 kb on + strand at 718.631 kb on - strand at 718.679 kb on + strand at 718.679 kb on + strand at 718.715 kb on + strand at 718.716 kb on - strand at 718.742 kb on + strand at 718.749 kb on - strand at 718.749 kb on - strand at 718.765 kb on - strand at 718.765 kb on - strand at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.909 kb on + strand, within HMPREF1078_RS06650 at 718.910 kb on - strand, within HMPREF1078_RS06650 at 718.942 kb on - strand, within HMPREF1078_RS06650 at 718.968 kb on - strand, within HMPREF1078_RS06650 at 718.968 kb on - strand, within HMPREF1078_RS06650 at 718.969 kb on + strand, within HMPREF1078_RS06650 at 718.970 kb on - strand, within HMPREF1078_RS06650 at 718.981 kb on - strand, within HMPREF1078_RS06650 at 719.015 kb on + strand, within HMPREF1078_RS06650 at 719.055 kb on - strand, within HMPREF1078_RS06650 at 719.142 kb on + strand, within HMPREF1078_RS06650 at 719.172 kb on + strand, within HMPREF1078_RS06650 at 719.173 kb on - strand, within HMPREF1078_RS06650 at 719.273 kb on + strand, within HMPREF1078_RS06650 at 719.294 kb on + strand, within HMPREF1078_RS06650 at 719.295 kb on - strand, within HMPREF1078_RS06650 at 719.407 kb on + strand, within HMPREF1078_RS06650 at 719.512 kb on - strand, within HMPREF1078_RS06650 at 719.512 kb on - strand, within HMPREF1078_RS06650 at 719.550 kb on - strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.553 kb on + strand, within HMPREF1078_RS06650 at 719.555 kb on + strand, within HMPREF1078_RS06650 at 719.610 kb on + strand at 719.628 kb on - strand at 719.633 kb on + strand at 719.748 kb on + strand at 719.757 kb on - strand at 719.757 kb on - strand at 719.797 kb on + strand at 719.806 kb on + strand at 719.814 kb on - strand at 719.814 kb on - strand at 719.830 kb on - strand at 719.836 kb on + strand at 719.836 kb on + strand at 719.836 kb on + strand at 719.836 kb on + strand at 719.837 kb on - strand at 719.839 kb on - strand at 719.864 kb on + strand at 719.865 kb on - strand at 719.867 kb on - strand at 719.868 kb on + strand at 719.868 kb on + strand at 719.869 kb on - strand at 719.898 kb on + strand at 719.899 kb on - strand at 719.913 kb on + strand at 719.915 kb on + strand at 719.915 kb on + strand at 719.915 kb on + strand at 719.916 kb on - strand at 719.916 kb on - strand at 719.919 kb on - strand at 719.919 kb on - strand at 719.924 kb on + strand at 719.927 kb on + strand at 719.927 kb on + strand at 719.939 kb on + strand at 719.957 kb on + strand at 719.958 kb on - strand at 719.962 kb on + strand at 720.001 kb on - strand at 720.008 kb on + strand at 720.009 kb on - strand at 720.024 kb on + strand at 720.025 kb on - strand at 720.027 kb on + strand at 720.028 kb on - strand at 720.028 kb on - strand at 720.028 kb on - strand at 720.059 kb on - strand at 720.088 kb on - strand at 720.088 kb on - strand at 720.093 kb on + strand at 720.106 kb on - strand at 720.106 kb on - strand at 720.141 kb on - strand at 720.141 kb on - strand at 720.157 kb on - strand at 720.160 kb on + strand at 720.163 kb on + strand at 720.164 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.191 kb on + strand at 720.192 kb on - strand at 720.193 kb on + strand at 720.193 kb on + strand at 720.193 kb on + strand at 720.193 kb on + strand at 720.194 kb on - strand at 720.194 kb on - strand at 720.195 kb on + strand at 720.196 kb on - strand at 720.196 kb on - strand at 720.237 kb on + strand at 720.237 kb on + strand at 720.237 kb on + strand at 720.309 kb on + strand at 720.321 kb on + strand at 720.377 kb on + strand, within HMPREF1078_RS06655 at 720.378 kb on - strand, within HMPREF1078_RS06655 at 720.386 kb on - strand, within HMPREF1078_RS06655 at 720.386 kb on - strand, within HMPREF1078_RS06655 at 720.386 kb on - strand, within HMPREF1078_RS06655 at 720.389 kb on + strand, within HMPREF1078_RS06655 at 720.389 kb on + strand, within HMPREF1078_RS06655 at 720.389 kb on + strand, within HMPREF1078_RS06655 at 720.389 kb on + strand, within HMPREF1078_RS06655 at 720.389 kb on + strand, within HMPREF1078_RS06655 at 720.394 kb on + strand, within HMPREF1078_RS06655 at 720.396 kb on + strand, within HMPREF1078_RS06655 at 720.396 kb on + strand, within HMPREF1078_RS06655 at 720.397 kb on - strand, within HMPREF1078_RS06655 at 720.399 kb on + strand, within HMPREF1078_RS06655 at 720.442 kb on - strand, within HMPREF1078_RS06655 at 720.442 kb on - strand, within HMPREF1078_RS06655 at 720.476 kb on + strand, within HMPREF1078_RS06655 at 720.477 kb on - strand, within HMPREF1078_RS06655 at 720.492 kb on + strand, within HMPREF1078_RS06655 at 720.635 kb on - strand, within HMPREF1078_RS06655 at 720.636 kb on + strand, within HMPREF1078_RS06655 at 720.636 kb on + strand, within HMPREF1078_RS06655 at 720.636 kb on + strand, within HMPREF1078_RS06655
Per-strain Table
Position Strand Gene LocusTag Fraction ABB 1 x (C) remove 717,743 + -1.3 717,780 - -0.8 717,783 + +1.1 717,783 + -0.6 717,783 + +0.2 717,783 + +0.2 717,784 - -0.2 717,784 - +0.9 717,792 - +0.1 717,798 + +0.2 717,825 - -0.1 717,895 - +0.3 717,905 - -0.3 717,916 - +0.6 717,926 + -1.3 717,983 + -1.9 717,983 + +0.1 717,984 - +0.4 717,984 - +0.7 717,992 + -0.3 718,001 - -0.4 718,028 + +0.5 718,028 + -0.6 718,028 + -0.2 718,029 - +0.2 718,029 - +1.4 718,029 - +0.4 718,063 - -1.0 718,063 - +1.5 718,063 - -0.2 718,063 - +0.2 718,067 + +0.2 718,068 - +0.1 718,068 - +0.1 718,249 + HMPREF1078_RS06645 0.31 -0.6 718,250 - HMPREF1078_RS06645 0.31 -0.2 718,263 - HMPREF1078_RS06645 0.33 -0.5 718,263 - HMPREF1078_RS06645 0.33 -0.4 718,295 + HMPREF1078_RS06645 0.39 -0.2 718,313 + HMPREF1078_RS06645 0.42 -0.5 718,412 + HMPREF1078_RS06645 0.59 -0.7 718,413 - HMPREF1078_RS06645 0.59 +0.2 718,413 - HMPREF1078_RS06645 0.59 +0.4 718,447 + HMPREF1078_RS06645 0.64 +0.2 718,516 + HMPREF1078_RS06645 0.76 -0.9 718,541 + HMPREF1078_RS06645 0.80 -0.4 718,575 - HMPREF1078_RS06645 0.86 -0.4 718,575 - HMPREF1078_RS06645 0.86 -0.2 718,628 + +0.3 718,631 - -1.6 718,679 + -0.4 718,679 + -0.7 718,715 + +1.0 718,716 - -0.2 718,742 + +0.7 718,749 - -0.1 718,749 - +0.1 718,765 - -0.8 718,765 - -0.3 718,909 + HMPREF1078_RS06650 0.18 +1.6 718,909 + HMPREF1078_RS06650 0.18 +0.0 718,909 + HMPREF1078_RS06650 0.18 -0.0 718,910 - HMPREF1078_RS06650 0.19 -1.0 718,942 - HMPREF1078_RS06650 0.22 +1.0 718,968 - HMPREF1078_RS06650 0.24 -2.3 718,968 - HMPREF1078_RS06650 0.24 -0.6 718,969 + HMPREF1078_RS06650 0.25 -0.4 718,970 - HMPREF1078_RS06650 0.25 +0.2 718,981 - HMPREF1078_RS06650 0.26 +1.0 719,015 + HMPREF1078_RS06650 0.29 -1.6 719,055 - HMPREF1078_RS06650 0.33 +1.1 719,142 + HMPREF1078_RS06650 0.42 -0.3 719,172 + HMPREF1078_RS06650 0.45 -0.1 719,173 - HMPREF1078_RS06650 0.45 -0.3 719,273 + HMPREF1078_RS06650 0.56 -0.9 719,294 + HMPREF1078_RS06650 0.58 +0.1 719,295 - HMPREF1078_RS06650 0.58 -0.3 719,407 + HMPREF1078_RS06650 0.69 +0.4 719,512 - HMPREF1078_RS06650 0.80 +0.3 719,512 - HMPREF1078_RS06650 0.80 +0.4 719,550 - HMPREF1078_RS06650 0.84 +0.3 719,553 + HMPREF1078_RS06650 0.84 +0.8 719,553 + HMPREF1078_RS06650 0.84 -0.1 719,553 + HMPREF1078_RS06650 0.84 +0.6 719,555 + HMPREF1078_RS06650 0.84 -0.5 719,610 + +0.0 719,628 - +0.6 719,633 + -0.9 719,748 + -0.1 719,757 - -0.4 719,757 - -1.0 719,797 + +0.0 719,806 + +0.1 719,814 - -0.3 719,814 - +0.3 719,830 - -0.7 719,836 + -1.5 719,836 + -0.7 719,836 + +0.4 719,836 + +0.1 719,837 - -1.2 719,839 - -0.5 719,864 + +0.5 719,865 - +0.1 719,867 - +0.3 719,868 + +0.8 719,868 + +0.4 719,869 - -1.3 719,898 + -1.8 719,899 - +0.0 719,913 + +0.9 719,915 + -0.0 719,915 + -0.5 719,915 + +0.2 719,916 - -1.6 719,916 - +0.1 719,919 - -0.4 719,919 - +1.4 719,924 + +0.4 719,927 + -0.1 719,927 + -1.2 719,939 + -0.6 719,957 + +0.1 719,958 - +0.5 719,962 + -0.2 720,001 - -1.0 720,008 + -0.2 720,009 - -0.6 720,024 + -0.1 720,025 - +0.5 720,027 + -1.2 720,028 - +0.2 720,028 - -0.5 720,028 - -3.1 720,059 - +0.5 720,088 - -0.1 720,088 - -0.0 720,093 + +0.8 720,106 - -0.2 720,106 - -1.5 720,141 - +0.2 720,141 - +0.5 720,157 - +0.2 720,160 + -0.5 720,163 + -0.2 720,164 - +0.3 720,184 - -1.2 720,184 - -0.8 720,191 + -0.5 720,192 - +0.3 720,193 + +1.5 720,193 + -0.1 720,193 + -0.3 720,193 + +1.1 720,194 - +0.0 720,194 - -0.0 720,195 + +0.5 720,196 - +0.5 720,196 - -0.2 720,237 + +0.0 720,237 + -0.5 720,237 + -0.2 720,309 + -0.1 720,321 + -0.1 720,377 + HMPREF1078_RS06655 0.11 +0.0 720,378 - HMPREF1078_RS06655 0.11 -0.8 720,386 - HMPREF1078_RS06655 0.12 -0.2 720,386 - HMPREF1078_RS06655 0.12 +0.5 720,386 - HMPREF1078_RS06655 0.12 +0.0 720,389 + HMPREF1078_RS06655 0.12 +0.2 720,389 + HMPREF1078_RS06655 0.12 -0.5 720,389 + HMPREF1078_RS06655 0.12 -0.1 720,389 + HMPREF1078_RS06655 0.12 +0.7 720,389 + HMPREF1078_RS06655 0.12 +0.1 720,394 + HMPREF1078_RS06655 0.12 +0.5 720,396 + HMPREF1078_RS06655 0.12 -0.2 720,396 + HMPREF1078_RS06655 0.12 -1.6 720,397 - HMPREF1078_RS06655 0.12 +0.4 720,399 + HMPREF1078_RS06655 0.12 -0.3 720,442 - HMPREF1078_RS06655 0.13 +0.7 720,442 - HMPREF1078_RS06655 0.13 -0.2 720,476 + HMPREF1078_RS06655 0.14 +0.7 720,477 - HMPREF1078_RS06655 0.14 +0.3 720,492 + HMPREF1078_RS06655 0.15 -0.5 720,635 - HMPREF1078_RS06655 0.19 +0.3 720,636 + HMPREF1078_RS06655 0.19 +0.6 720,636 + HMPREF1078_RS06655 0.19 -0.2 720,636 + HMPREF1078_RS06655 0.19 -0.2
Or see this region's nucleotide sequence