Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19690

Experiment: D-Raffinose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01785 and HMPREF1078_RS19690 are separated by 175 nucleotidesHMPREF1078_RS19690 and HMPREF1078_RS19695 overlap by 43 nucleotidesHMPREF1078_RS19695 and HMPREF1078_RS01800 are separated by 20 nucleotides HMPREF1078_RS01785: HMPREF1078_RS01785 - alpha-L-rhamnosidase C-terminal domain-containing protein, at 447,029 to 449,245 _RS01785 HMPREF1078_RS19690: HMPREF1078_RS19690 - energy transducer TonB, at 449,421 to 449,954 _RS19690 HMPREF1078_RS19695: HMPREF1078_RS19695 - hypothetical protein, at 449,912 to 450,565 _RS19695 HMPREF1078_RS01800: HMPREF1078_RS01800 - BlaI/MecI/CopY family transcriptional regulator, at 450,586 to 450,945 _RS01800 Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1at 448.589 kb on + strand, within HMPREF1078_RS01785at 448.589 kb on + strand, within HMPREF1078_RS01785at 448.589 kb on + strand, within HMPREF1078_RS01785at 448.590 kb on - strand, within HMPREF1078_RS01785at 448.637 kb on + strand, within HMPREF1078_RS01785at 448.655 kb on - strand, within HMPREF1078_RS01785at 448.769 kb on + strand, within HMPREF1078_RS01785at 448.865 kb on + strand, within HMPREF1078_RS01785at 448.865 kb on + strand, within HMPREF1078_RS01785at 448.871 kb on - strand, within HMPREF1078_RS01785at 448.877 kb on - strand, within HMPREF1078_RS01785at 448.878 kb on - strand, within HMPREF1078_RS01785at 448.996 kb on + strand, within HMPREF1078_RS01785at 448.996 kb on + strand, within HMPREF1078_RS01785at 448.996 kb on + strand, within HMPREF1078_RS01785at 448.996 kb on + strand, within HMPREF1078_RS01785at 449.067 kb on + strandat 449.068 kb on - strandat 449.068 kb on - strandat 449.068 kb on - strandat 449.068 kb on - strandat 449.071 kb on + strandat 449.072 kb on - strandat 449.088 kb on + strandat 449.088 kb on + strandat 449.089 kb on - strandat 449.223 kb on + strandat 449.224 kb on - strandat 449.247 kb on - strandat 449.255 kb on - strandat 449.293 kb on + strandat 449.294 kb on - strandat 449.452 kb on + strandat 449.453 kb on - strandat 449.453 kb on - strandat 449.457 kb on + strandat 449.458 kb on - strandat 449.458 kb on - strandat 449.550 kb on + strand, within HMPREF1078_RS19690at 449.682 kb on + strand, within HMPREF1078_RS19690at 449.682 kb on + strand, within HMPREF1078_RS19690at 449.718 kb on - strand, within HMPREF1078_RS19690at 449.786 kb on + strand, within HMPREF1078_RS19690at 449.862 kb on - strand, within HMPREF1078_RS19690at 449.874 kb on + strand, within HMPREF1078_RS19690at 449.874 kb on + strand, within HMPREF1078_RS19690at 449.875 kb on - strand, within HMPREF1078_RS19690at 449.908 kb on + strandat 450.117 kb on + strand, within HMPREF1078_RS19695at 450.176 kb on - strand, within HMPREF1078_RS19695at 450.339 kb on - strand, within HMPREF1078_RS19695at 450.342 kb on - strand, within HMPREF1078_RS19695at 450.342 kb on - strand, within HMPREF1078_RS19695at 450.352 kb on - strand, within HMPREF1078_RS19695at 450.355 kb on - strand, within HMPREF1078_RS19695at 450.364 kb on + strand, within HMPREF1078_RS19695at 450.365 kb on - strand, within HMPREF1078_RS19695at 450.365 kb on - strand, within HMPREF1078_RS19695at 450.446 kb on + strand, within HMPREF1078_RS19695at 450.446 kb on + strand, within HMPREF1078_RS19695at 450.447 kb on - strand, within HMPREF1078_RS19695at 450.447 kb on - strand, within HMPREF1078_RS19695at 450.475 kb on + strand, within HMPREF1078_RS19695at 450.476 kb on - strand, within HMPREF1078_RS19695at 450.488 kb on + strand, within HMPREF1078_RS19695at 450.491 kb on + strand, within HMPREF1078_RS19695at 450.505 kb on + strandat 450.506 kb on - strandat 450.510 kb on - strandat 450.510 kb on - strandat 450.548 kb on + strandat 450.561 kb on - strandat 450.561 kb on - strandat 450.565 kb on + strandat 450.571 kb on + strandat 450.572 kb on - strandat 450.578 kb on - strandat 450.588 kb on - strandat 450.642 kb on + strand, within HMPREF1078_RS01800at 450.676 kb on - strand, within HMPREF1078_RS01800at 450.677 kb on + strand, within HMPREF1078_RS01800at 450.720 kb on + strand, within HMPREF1078_RS01800at 450.721 kb on - strand, within HMPREF1078_RS01800at 450.721 kb on - strand, within HMPREF1078_RS01800at 450.729 kb on - strand, within HMPREF1078_RS01800at 450.791 kb on + strand, within HMPREF1078_RS01800at 450.791 kb on + strand, within HMPREF1078_RS01800at 450.791 kb on + strand, within HMPREF1078_RS01800at 450.791 kb on + strand, within HMPREF1078_RS01800at 450.792 kb on - strand, within HMPREF1078_RS01800at 450.792 kb on - strand, within HMPREF1078_RS01800at 450.792 kb on - strand, within HMPREF1078_RS01800at 450.792 kb on - strand, within HMPREF1078_RS01800at 450.837 kb on - strand, within HMPREF1078_RS01800at 450.868 kb on + strand, within HMPREF1078_RS01800at 450.868 kb on + strand, within HMPREF1078_RS01800at 450.868 kb on + strand, within HMPREF1078_RS01800at 450.903 kb on + strand, within HMPREF1078_RS01800at 450.904 kb on - strand, within HMPREF1078_RS01800at 450.905 kb on + strand, within HMPREF1078_RS01800at 450.906 kb on - strand, within HMPREF1078_RS01800at 450.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C)
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448,589 + HMPREF1078_RS01785 0.70 +1.0
448,589 + HMPREF1078_RS01785 0.70 +0.7
448,589 + HMPREF1078_RS01785 0.70 -1.1
448,590 - HMPREF1078_RS01785 0.70 -1.1
448,637 + HMPREF1078_RS01785 0.73 -0.8
448,655 - HMPREF1078_RS01785 0.73 +0.0
448,769 + HMPREF1078_RS01785 0.78 +0.1
448,865 + HMPREF1078_RS01785 0.83 +0.6
448,865 + HMPREF1078_RS01785 0.83 -2.4
448,871 - HMPREF1078_RS01785 0.83 +0.5
448,877 - HMPREF1078_RS01785 0.83 -0.7
448,878 - HMPREF1078_RS01785 0.83 -0.4
448,996 + HMPREF1078_RS01785 0.89 +0.0
448,996 + HMPREF1078_RS01785 0.89 -0.6
448,996 + HMPREF1078_RS01785 0.89 -0.4
448,996 + HMPREF1078_RS01785 0.89 +1.2
449,067 + +0.5
449,068 - -3.0
449,068 - +0.8
449,068 - -0.8
449,068 - +0.9
449,071 + +1.3
449,072 - -1.2
449,088 + +0.2
449,088 + -0.2
449,089 - +0.7
449,223 + +1.0
449,224 - +0.2
449,247 - -0.7
449,255 - -2.0
449,293 + +1.1
449,294 - +0.5
449,452 + +0.0
449,453 - -1.2
449,453 - +0.6
449,457 + -0.5
449,458 - +0.9
449,458 - +0.2
449,550 + HMPREF1078_RS19690 0.24 -0.9
449,682 + HMPREF1078_RS19690 0.49 -1.6
449,682 + HMPREF1078_RS19690 0.49 -1.3
449,718 - HMPREF1078_RS19690 0.56 -0.3
449,786 + HMPREF1078_RS19690 0.68 -0.4
449,862 - HMPREF1078_RS19690 0.83 -0.2
449,874 + HMPREF1078_RS19690 0.85 -0.2
449,874 + HMPREF1078_RS19690 0.85 -1.6
449,875 - HMPREF1078_RS19690 0.85 +0.4
449,908 + -0.5
450,117 + HMPREF1078_RS19695 0.31 -0.4
450,176 - HMPREF1078_RS19695 0.40 +0.8
450,339 - HMPREF1078_RS19695 0.65 -2.8
450,342 - HMPREF1078_RS19695 0.66 -0.7
450,342 - HMPREF1078_RS19695 0.66 +0.7
450,352 - HMPREF1078_RS19695 0.67 -0.8
450,355 - HMPREF1078_RS19695 0.68 -0.4
450,364 + HMPREF1078_RS19695 0.69 +0.6
450,365 - HMPREF1078_RS19695 0.69 -0.6
450,365 - HMPREF1078_RS19695 0.69 +0.9
450,446 + HMPREF1078_RS19695 0.82 +0.3
450,446 + HMPREF1078_RS19695 0.82 -0.9
450,447 - HMPREF1078_RS19695 0.82 +0.1
450,447 - HMPREF1078_RS19695 0.82 -0.7
450,475 + HMPREF1078_RS19695 0.86 +0.1
450,476 - HMPREF1078_RS19695 0.86 +0.6
450,488 + HMPREF1078_RS19695 0.88 +0.5
450,491 + HMPREF1078_RS19695 0.89 +0.1
450,505 + -0.7
450,506 - -0.8
450,510 - -1.4
450,510 - -0.2
450,548 + -1.7
450,561 - +0.8
450,561 - +0.6
450,565 + -1.0
450,571 + +0.9
450,572 - -0.5
450,578 - -1.2
450,588 - -1.5
450,642 + HMPREF1078_RS01800 0.16 -1.3
450,676 - HMPREF1078_RS01800 0.25 +0.5
450,677 + HMPREF1078_RS01800 0.25 -0.1
450,720 + HMPREF1078_RS01800 0.37 -1.9
450,721 - HMPREF1078_RS01800 0.38 -0.7
450,721 - HMPREF1078_RS01800 0.38 -0.6
450,729 - HMPREF1078_RS01800 0.40 +0.0
450,791 + HMPREF1078_RS01800 0.57 -1.5
450,791 + HMPREF1078_RS01800 0.57 -0.3
450,791 + HMPREF1078_RS01800 0.57 +0.7
450,791 + HMPREF1078_RS01800 0.57 -0.2
450,792 - HMPREF1078_RS01800 0.57 +0.3
450,792 - HMPREF1078_RS01800 0.57 +0.2
450,792 - HMPREF1078_RS01800 0.57 +0.3
450,792 - HMPREF1078_RS01800 0.57 -0.4
450,837 - HMPREF1078_RS01800 0.70 +0.3
450,868 + HMPREF1078_RS01800 0.78 -0.6
450,868 + HMPREF1078_RS01800 0.78 +1.1
450,868 + HMPREF1078_RS01800 0.78 -0.1
450,903 + HMPREF1078_RS01800 0.88 +0.1
450,904 - HMPREF1078_RS01800 0.88 +0.8
450,905 + HMPREF1078_RS01800 0.89 +0.2
450,906 - HMPREF1078_RS01800 0.89 -0.3
450,913 + -1.1

Or see this region's nucleotide sequence