Experiment: D-Raffinose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07755 and HMPREF1078_RS07760 are separated by 66 nucleotides HMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides HMPREF1078_RS07765 and HMPREF1078_RS07770 are separated by 530 nucleotides
HMPREF1078_RS07755: HMPREF1078_RS07755 - outer membrane protein assembly factor BamD, at 95,180 to 95,989
_RS07755
HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481
_RS07760
HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880
_RS07765
HMPREF1078_RS07770: HMPREF1078_RS07770 - GH92 family glycosyl hydrolase, at 98,411 to 100,633
_RS07770
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.032 kb on - strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.065 kb on - strand at 96.065 kb on - strand at 96.067 kb on - strand at 96.068 kb on + strand at 96.180 kb on + strand, within HMPREF1078_RS07760 at 96.181 kb on - strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.187 kb on - strand, within HMPREF1078_RS07760 at 96.212 kb on - strand, within HMPREF1078_RS07760 at 96.396 kb on - strand, within HMPREF1078_RS07760 at 96.446 kb on - strand at 96.460 kb on + strand at 96.465 kb on - strand at 96.473 kb on - strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.477 kb on - strand at 96.477 kb on - strand at 96.501 kb on - strand at 96.503 kb on - strand at 96.515 kb on - strand at 96.528 kb on + strand at 96.657 kb on + strand at 96.658 kb on - strand at 96.658 kb on - strand at 96.678 kb on + strand at 96.678 kb on + strand at 96.689 kb on + strand at 96.690 kb on - strand at 96.762 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.888 kb on - strand, within HMPREF1078_RS07765 at 96.896 kb on + strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.905 kb on + strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.956 kb on + strand, within HMPREF1078_RS07765 at 96.957 kb on - strand, within HMPREF1078_RS07765 at 96.961 kb on + strand, within HMPREF1078_RS07765 at 97.001 kb on + strand, within HMPREF1078_RS07765 at 97.002 kb on - strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.189 kb on + strand, within HMPREF1078_RS07765 at 97.291 kb on - strand, within HMPREF1078_RS07765 at 97.404 kb on - strand, within HMPREF1078_RS07765 at 97.478 kb on - strand, within HMPREF1078_RS07765 at 97.483 kb on + strand, within HMPREF1078_RS07765 at 97.484 kb on - strand, within HMPREF1078_RS07765 at 97.484 kb on - strand, within HMPREF1078_RS07765 at 97.577 kb on - strand, within HMPREF1078_RS07765 at 97.589 kb on + strand, within HMPREF1078_RS07765 at 97.590 kb on - strand, within HMPREF1078_RS07765 at 97.711 kb on - strand, within HMPREF1078_RS07765 at 97.712 kb on + strand, within HMPREF1078_RS07765 at 97.721 kb on + strand, within HMPREF1078_RS07765 at 97.730 kb on + strand, within HMPREF1078_RS07765 at 97.731 kb on - strand, within HMPREF1078_RS07765 at 97.784 kb on + strand at 97.784 kb on + strand at 97.785 kb on - strand at 97.785 kb on - strand at 97.785 kb on - strand at 97.789 kb on + strand at 97.853 kb on + strand at 97.853 kb on + strand at 97.854 kb on - strand at 97.863 kb on - strand at 97.901 kb on + strand at 97.931 kb on + strand at 97.935 kb on - strand at 97.974 kb on + strand at 98.023 kb on + strand at 98.032 kb on + strand at 98.033 kb on - strand at 98.033 kb on - strand at 98.033 kb on - strand at 98.034 kb on + strand at 98.034 kb on + strand at 98.034 kb on + strand at 98.035 kb on - strand at 98.071 kb on + strand at 98.072 kb on - strand at 98.072 kb on - strand at 98.133 kb on - strand at 98.155 kb on + strand at 98.155 kb on + strand at 98.200 kb on + strand at 98.231 kb on - strand at 98.244 kb on + strand at 98.250 kb on - strand at 98.253 kb on + strand at 98.253 kb on + strand at 98.257 kb on + strand at 98.266 kb on + strand at 98.267 kb on - strand at 98.267 kb on - strand at 98.268 kb on - strand at 98.272 kb on - strand at 98.272 kb on - strand at 98.286 kb on + strand at 98.297 kb on + strand at 98.297 kb on + strand at 98.341 kb on - strand at 98.365 kb on - strand at 98.372 kb on + strand at 98.381 kb on - strand at 98.413 kb on - strand at 98.416 kb on + strand at 98.416 kb on + strand at 98.417 kb on - strand at 98.417 kb on - strand at 98.417 kb on - strand at 98.417 kb on - strand at 98.417 kb on - strand at 98.419 kb on + strand at 98.420 kb on - strand at 98.420 kb on - strand at 98.422 kb on + strand at 98.422 kb on + strand at 98.422 kb on + strand at 98.423 kb on - strand at 98.423 kb on - strand at 98.425 kb on - strand at 98.425 kb on - strand at 98.429 kb on + strand at 98.429 kb on + strand at 98.430 kb on - strand at 98.480 kb on - strand at 98.492 kb on + strand at 98.495 kb on - strand at 98.497 kb on + strand at 98.499 kb on + strand at 98.499 kb on + strand at 98.499 kb on + strand at 98.544 kb on + strand at 98.545 kb on - strand at 98.545 kb on - strand at 98.545 kb on - strand at 98.643 kb on + strand, within HMPREF1078_RS07770 at 98.644 kb on - strand, within HMPREF1078_RS07770 at 98.691 kb on - strand, within HMPREF1078_RS07770 at 98.691 kb on - strand, within HMPREF1078_RS07770 at 98.782 kb on - strand, within HMPREF1078_RS07770 at 98.808 kb on - strand, within HMPREF1078_RS07770 at 98.808 kb on - strand, within HMPREF1078_RS07770 at 98.813 kb on - strand, within HMPREF1078_RS07770 at 98.816 kb on - strand, within HMPREF1078_RS07770 at 98.817 kb on + strand, within HMPREF1078_RS07770 at 98.818 kb on - strand, within HMPREF1078_RS07770 at 98.823 kb on + strand, within HMPREF1078_RS07770 at 98.859 kb on + strand, within HMPREF1078_RS07770
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C) remove 96,032 - -1.1 96,064 + +0.6 96,064 + +1.3 96,064 + -0.1 96,065 - -0.2 96,065 - +0.2 96,067 - -0.3 96,068 + -1.7 96,180 + HMPREF1078_RS07760 0.29 -0.5 96,181 - HMPREF1078_RS07760 0.29 +0.0 96,184 + HMPREF1078_RS07760 0.30 -1.7 96,184 + HMPREF1078_RS07760 0.30 +0.6 96,184 + HMPREF1078_RS07760 0.30 -0.6 96,185 - HMPREF1078_RS07760 0.30 -1.1 96,185 - HMPREF1078_RS07760 0.30 +0.1 96,187 - HMPREF1078_RS07760 0.31 -0.6 96,212 - HMPREF1078_RS07760 0.37 -0.5 96,396 - HMPREF1078_RS07760 0.80 +0.2 96,446 - -0.3 96,460 + -0.7 96,465 - +0.3 96,473 - -1.6 96,476 + -0.3 96,476 + +0.2 96,477 - +1.2 96,477 - -0.8 96,501 - -0.9 96,503 - -0.3 96,515 - -0.9 96,528 + +0.5 96,657 + -0.9 96,658 - +0.4 96,658 - -1.1 96,678 + -0.7 96,678 + +0.2 96,689 + -0.1 96,690 - +0.6 96,762 + HMPREF1078_RS07765 0.14 +0.5 96,870 + HMPREF1078_RS07765 0.22 -0.0 96,870 + HMPREF1078_RS07765 0.22 +2.0 96,871 - HMPREF1078_RS07765 0.22 -0.7 96,871 - HMPREF1078_RS07765 0.22 +0.1 96,871 - HMPREF1078_RS07765 0.22 +0.4 96,888 - HMPREF1078_RS07765 0.24 +1.1 96,896 + HMPREF1078_RS07765 0.24 +0.0 96,897 - HMPREF1078_RS07765 0.24 -0.3 96,897 - HMPREF1078_RS07765 0.24 -2.1 96,905 + HMPREF1078_RS07765 0.25 -1.5 96,939 - HMPREF1078_RS07765 0.28 +0.3 96,939 - HMPREF1078_RS07765 0.28 -0.3 96,939 - HMPREF1078_RS07765 0.28 -1.3 96,956 + HMPREF1078_RS07765 0.29 -0.6 96,957 - HMPREF1078_RS07765 0.29 +0.3 96,961 + HMPREF1078_RS07765 0.29 -0.0 97,001 + HMPREF1078_RS07765 0.32 -0.5 97,002 - HMPREF1078_RS07765 0.32 +0.4 97,184 + HMPREF1078_RS07765 0.46 +0.9 97,184 + HMPREF1078_RS07765 0.46 -2.3 97,189 + HMPREF1078_RS07765 0.47 +0.3 97,291 - HMPREF1078_RS07765 0.55 -0.1 97,404 - HMPREF1078_RS07765 0.63 -0.3 97,478 - HMPREF1078_RS07765 0.69 -0.1 97,483 + HMPREF1078_RS07765 0.69 +0.7 97,484 - HMPREF1078_RS07765 0.70 -0.0 97,484 - HMPREF1078_RS07765 0.70 -0.2 97,577 - HMPREF1078_RS07765 0.77 -2.1 97,589 + HMPREF1078_RS07765 0.78 -1.9 97,590 - HMPREF1078_RS07765 0.78 -0.2 97,711 - HMPREF1078_RS07765 0.87 -0.5 97,712 + HMPREF1078_RS07765 0.87 +0.0 97,721 + HMPREF1078_RS07765 0.88 +1.4 97,730 + HMPREF1078_RS07765 0.88 -0.4 97,731 - HMPREF1078_RS07765 0.88 +1.3 97,784 + +1.1 97,784 + +0.3 97,785 - -1.1 97,785 - +1.0 97,785 - +1.5 97,789 + +0.2 97,853 + -1.9 97,853 + +1.0 97,854 - -1.6 97,863 - +0.1 97,901 + -1.5 97,931 + +1.2 97,935 - +1.6 97,974 + +0.7 98,023 + -0.5 98,032 + -1.3 98,033 - +0.6 98,033 - +1.0 98,033 - +1.4 98,034 + +1.1 98,034 + +0.6 98,034 + +1.0 98,035 - -1.3 98,071 + -0.6 98,072 - +0.4 98,072 - +0.3 98,133 - +0.2 98,155 + +0.6 98,155 + -0.2 98,200 + -0.3 98,231 - -1.4 98,244 + -0.0 98,250 - +1.2 98,253 + -1.6 98,253 + -0.9 98,257 + -1.5 98,266 + -1.8 98,267 - +0.7 98,267 - -0.0 98,268 - -0.9 98,272 - +0.0 98,272 - -2.1 98,286 + +0.1 98,297 + -0.2 98,297 + +0.3 98,341 - -0.0 98,365 - -0.1 98,372 + +1.0 98,381 - +0.7 98,413 - +0.6 98,416 + +0.5 98,416 + +1.0 98,417 - +1.1 98,417 - -0.7 98,417 - -0.7 98,417 - +0.1 98,417 - -0.1 98,419 + +1.1 98,420 - +0.8 98,420 - -0.9 98,422 + -0.2 98,422 + +2.5 98,422 + -1.5 98,423 - -0.7 98,423 - -1.2 98,425 - -1.9 98,425 - -1.3 98,429 + +0.4 98,429 + +0.0 98,430 - +0.6 98,480 - -0.6 98,492 + -0.8 98,495 - -0.3 98,497 + +0.3 98,499 + +0.0 98,499 + -0.4 98,499 + -1.6 98,544 + -0.2 98,545 - +1.0 98,545 - +0.7 98,545 - +0.2 98,643 + HMPREF1078_RS07770 0.10 +1.1 98,644 - HMPREF1078_RS07770 0.10 -0.1 98,691 - HMPREF1078_RS07770 0.13 -0.3 98,691 - HMPREF1078_RS07770 0.13 -0.9 98,782 - HMPREF1078_RS07770 0.17 +0.7 98,808 - HMPREF1078_RS07770 0.18 +0.1 98,808 - HMPREF1078_RS07770 0.18 +0.5 98,813 - HMPREF1078_RS07770 0.18 +0.4 98,816 - HMPREF1078_RS07770 0.18 -0.4 98,817 + HMPREF1078_RS07770 0.18 +0.2 98,818 - HMPREF1078_RS07770 0.18 -0.9 98,823 + HMPREF1078_RS07770 0.19 +2.5 98,859 + HMPREF1078_RS07770 0.20 -0.2
Or see this region's nucleotide sequence