Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15320 and HMPREF1078_RS15325 are separated by 751 nucleotides HMPREF1078_RS15325 and HMPREF1078_RS15330 are separated by 181 nucleotides HMPREF1078_RS15330 and HMPREF1078_RS15335 are separated by 77 nucleotides
HMPREF1078_RS15320: HMPREF1078_RS15320 - tetratricopeptide repeat protein, at 149,411 to 150,946
_RS15320
HMPREF1078_RS15325: HMPREF1078_RS15325 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 151,698 to 153,209
_RS15325
HMPREF1078_RS15330: HMPREF1078_RS15330 - tRNA-Gly, at 153,391 to 153,463
_RS15330
HMPREF1078_RS15335: HMPREF1078_RS15335 - acetylglutamate kinase, at 153,541 to 154,308
_RS15335
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 150.706 kb on + strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.708 kb on + strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.748 kb on - strand, within HMPREF1078_RS15320 at 150.797 kb on + strand at 150.851 kb on + strand at 150.851 kb on + strand at 150.855 kb on - strand at 150.922 kb on + strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.925 kb on + strand at 150.925 kb on + strand at 150.930 kb on - strand at 150.940 kb on + strand at 150.959 kb on + strand at 150.977 kb on + strand at 150.978 kb on - strand at 151.036 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.192 kb on - strand at 151.402 kb on + strand at 151.402 kb on + strand at 151.413 kb on + strand at 151.433 kb on + strand at 151.454 kb on - strand at 151.464 kb on - strand at 151.493 kb on - strand at 151.578 kb on + strand at 151.638 kb on + strand at 151.658 kb on + strand at 151.659 kb on - strand at 151.686 kb on - strand at 151.731 kb on - strand at 151.839 kb on + strand at 151.860 kb on + strand, within HMPREF1078_RS15325 at 151.861 kb on - strand, within HMPREF1078_RS15325 at 151.868 kb on + strand, within HMPREF1078_RS15325 at 151.930 kb on + strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.961 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on - strand, within HMPREF1078_RS15325 at 152.123 kb on + strand, within HMPREF1078_RS15325 at 152.179 kb on - strand, within HMPREF1078_RS15325 at 152.188 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.409 kb on + strand, within HMPREF1078_RS15325 at 152.474 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.560 kb on - strand, within HMPREF1078_RS15325 at 152.587 kb on - strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.773 kb on - strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.063 kb on - strand at 153.102 kb on - strand at 153.106 kb on - strand at 153.124 kb on - strand at 153.161 kb on + strand at 153.163 kb on + strand at 153.164 kb on - strand at 153.164 kb on - strand at 153.168 kb on - strand at 153.185 kb on + strand at 153.186 kb on - strand at 153.199 kb on - strand at 153.199 kb on - strand at 153.204 kb on + strand at 153.209 kb on + strand at 153.210 kb on - strand at 153.210 kb on - strand at 153.214 kb on - strand at 153.214 kb on - strand at 153.241 kb on - strand at 153.248 kb on + strand at 153.249 kb on - strand at 153.257 kb on + strand at 153.287 kb on - strand at 153.320 kb on - strand at 153.443 kb on + strand, within HMPREF1078_RS15330 at 153.458 kb on + strand at 153.534 kb on + strand at 153.536 kb on + strand at 153.537 kb on - strand at 153.537 kb on - strand at 153.552 kb on - strand at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.639 kb on + strand, within HMPREF1078_RS15335 at 153.640 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.812 kb on + strand, within HMPREF1078_RS15335 at 153.817 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.957 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.011 kb on + strand, within HMPREF1078_RS15335 at 154.145 kb on + strand, within HMPREF1078_RS15335 at 154.153 kb on - strand, within HMPREF1078_RS15335 at 154.169 kb on - strand, within HMPREF1078_RS15335 at 154.207 kb on - strand, within HMPREF1078_RS15335
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 150,706 + HMPREF1078_RS15320 0.84 -1.0 150,707 - HMPREF1078_RS15320 0.84 -0.6 150,707 - HMPREF1078_RS15320 0.84 -0.2 150,708 + HMPREF1078_RS15320 0.84 +0.5 150,709 - HMPREF1078_RS15320 0.85 -2.4 150,709 - HMPREF1078_RS15320 0.85 -0.9 150,744 - HMPREF1078_RS15320 0.87 -0.9 150,744 - HMPREF1078_RS15320 0.87 -1.5 150,748 - HMPREF1078_RS15320 0.87 +0.5 150,797 + -0.7 150,851 + -0.7 150,851 + -0.5 150,855 - +1.8 150,922 + -1.6 150,923 - -1.3 150,923 - +0.9 150,923 - -1.6 150,925 + -0.8 150,925 + +0.2 150,930 - +0.3 150,940 + +0.3 150,959 + +1.8 150,977 + +0.5 150,978 - -0.9 151,036 - -1.8 151,146 - -0.4 151,146 - -0.2 151,146 - -0.3 151,146 - -1.2 151,191 + +1.3 151,191 + -1.9 151,191 + -0.9 151,192 - -1.3 151,402 + +0.0 151,402 + +0.1 151,413 + -0.3 151,433 + -0.7 151,454 - +1.0 151,464 - +1.0 151,493 - +0.8 151,578 + -0.8 151,638 + -0.9 151,658 + +0.1 151,659 - +0.1 151,686 - -0.6 151,731 - -0.7 151,839 + -3.0 151,860 + HMPREF1078_RS15325 0.11 -3.2 151,861 - HMPREF1078_RS15325 0.11 -0.3 151,868 + HMPREF1078_RS15325 0.11 -1.7 151,930 + HMPREF1078_RS15325 0.15 +0.4 151,931 - HMPREF1078_RS15325 0.15 -1.7 151,931 - HMPREF1078_RS15325 0.15 -2.4 151,961 + HMPREF1078_RS15325 0.17 +2.3 151,963 + HMPREF1078_RS15325 0.18 +0.4 151,963 + HMPREF1078_RS15325 0.18 -0.8 151,963 + HMPREF1078_RS15325 0.18 -0.8 152,039 + HMPREF1078_RS15325 0.23 -0.0 152,039 + HMPREF1078_RS15325 0.23 -0.6 152,039 - HMPREF1078_RS15325 0.23 -2.7 152,123 + HMPREF1078_RS15325 0.28 -0.7 152,179 - HMPREF1078_RS15325 0.32 -2.8 152,188 - HMPREF1078_RS15325 0.32 -1.2 152,391 - HMPREF1078_RS15325 0.46 +0.4 152,391 - HMPREF1078_RS15325 0.46 -1.1 152,409 + HMPREF1078_RS15325 0.47 -2.3 152,474 + HMPREF1078_RS15325 0.51 -3.4 152,513 + HMPREF1078_RS15325 0.54 -1.5 152,513 + HMPREF1078_RS15325 0.54 -1.5 152,560 - HMPREF1078_RS15325 0.57 -1.1 152,587 - HMPREF1078_RS15325 0.59 -0.3 152,765 + HMPREF1078_RS15325 0.71 -2.5 152,765 + HMPREF1078_RS15325 0.71 -1.8 152,767 + HMPREF1078_RS15325 0.71 -2.8 152,768 - HMPREF1078_RS15325 0.71 -2.3 152,768 - HMPREF1078_RS15325 0.71 +1.8 152,768 - HMPREF1078_RS15325 0.71 +0.4 152,773 - HMPREF1078_RS15325 0.71 -2.3 153,054 + HMPREF1078_RS15325 0.90 -0.8 153,063 - -0.2 153,102 - -5.1 153,106 - -0.2 153,124 - -1.1 153,161 + -0.6 153,163 + -1.5 153,164 - -0.7 153,164 - -2.6 153,168 - +1.0 153,185 + +1.0 153,186 - -1.0 153,199 - -3.2 153,199 - +0.7 153,204 + -1.0 153,209 + -2.0 153,210 - -2.8 153,210 - -2.3 153,214 - -1.0 153,214 - -1.7 153,241 - +0.6 153,248 + -0.5 153,249 - +1.5 153,257 + -1.5 153,287 - +1.0 153,320 - +0.6 153,443 + HMPREF1078_RS15330 0.71 +1.1 153,458 + +0.3 153,534 + +1.8 153,536 + -0.2 153,537 - -3.2 153,537 - -1.3 153,552 - -4.7 153,630 - HMPREF1078_RS15335 0.12 -1.2 153,630 - HMPREF1078_RS15335 0.12 -2.8 153,639 + HMPREF1078_RS15335 0.13 -3.0 153,640 - HMPREF1078_RS15335 0.13 +1.0 153,757 - HMPREF1078_RS15335 0.28 -0.0 153,757 - HMPREF1078_RS15335 0.28 -3.4 153,812 + HMPREF1078_RS15335 0.35 -3.7 153,817 - HMPREF1078_RS15335 0.36 -2.1 153,893 - HMPREF1078_RS15335 0.46 -1.8 153,893 - HMPREF1078_RS15335 0.46 -3.1 153,957 + HMPREF1078_RS15335 0.54 -1.4 154,002 + HMPREF1078_RS15335 0.60 -1.3 154,002 + HMPREF1078_RS15335 0.60 -3.1 154,003 - HMPREF1078_RS15335 0.60 -1.3 154,003 - HMPREF1078_RS15335 0.60 -3.2 154,003 - HMPREF1078_RS15335 0.60 -4.1 154,011 + HMPREF1078_RS15335 0.61 -3.8 154,145 + HMPREF1078_RS15335 0.79 -0.5 154,153 - HMPREF1078_RS15335 0.80 -2.4 154,169 - HMPREF1078_RS15335 0.82 -1.8 154,207 - HMPREF1078_RS15335 0.87 -2.5
Or see this region's nucleotide sequence