Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12720 and HMPREF1078_RS12725 are separated by 174 nucleotides HMPREF1078_RS12725 and HMPREF1078_RS12730 are separated by 131 nucleotides
HMPREF1078_RS12720: HMPREF1078_RS12720 - sodium ion-translocating decarboxylase subunit beta, at 569,141 to 570,376
_RS12720
HMPREF1078_RS12725: HMPREF1078_RS12725 - DUF349 domain-containing protein, at 570,551 to 572,464
_RS12725
HMPREF1078_RS12730: HMPREF1078_RS12730 - hypothetical protein, at 572,596 to 573,804
_RS12730
Position (kb)
570
571
572
573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 569.623 kb on - strand, within HMPREF1078_RS12720 at 569.644 kb on + strand, within HMPREF1078_RS12720 at 569.645 kb on - strand, within HMPREF1078_RS12720 at 569.735 kb on + strand, within HMPREF1078_RS12720 at 569.735 kb on + strand, within HMPREF1078_RS12720 at 569.735 kb on + strand, within HMPREF1078_RS12720 at 569.735 kb on + strand, within HMPREF1078_RS12720 at 569.736 kb on - strand, within HMPREF1078_RS12720 at 569.737 kb on + strand, within HMPREF1078_RS12720 at 569.738 kb on - strand, within HMPREF1078_RS12720 at 569.769 kb on + strand, within HMPREF1078_RS12720 at 569.770 kb on - strand, within HMPREF1078_RS12720 at 569.778 kb on + strand, within HMPREF1078_RS12720 at 569.779 kb on - strand, within HMPREF1078_RS12720 at 569.799 kb on + strand, within HMPREF1078_RS12720 at 569.799 kb on + strand, within HMPREF1078_RS12720 at 569.799 kb on + strand, within HMPREF1078_RS12720 at 569.800 kb on - strand, within HMPREF1078_RS12720 at 569.810 kb on - strand, within HMPREF1078_RS12720 at 569.831 kb on + strand, within HMPREF1078_RS12720 at 569.942 kb on - strand, within HMPREF1078_RS12720 at 569.984 kb on - strand, within HMPREF1078_RS12720 at 569.984 kb on - strand, within HMPREF1078_RS12720 at 570.109 kb on - strand, within HMPREF1078_RS12720 at 570.261 kb on + strand at 570.273 kb on - strand at 570.273 kb on - strand at 570.300 kb on - strand at 570.355 kb on - strand at 570.394 kb on - strand at 570.397 kb on + strand at 570.398 kb on - strand at 570.447 kb on + strand at 570.448 kb on - strand at 570.458 kb on + strand at 570.459 kb on - strand at 570.514 kb on + strand at 570.515 kb on - strand at 570.519 kb on + strand at 570.519 kb on + strand at 570.551 kb on - strand at 570.611 kb on - strand at 570.611 kb on - strand at 570.655 kb on - strand at 570.655 kb on - strand at 570.655 kb on - strand at 570.804 kb on + strand, within HMPREF1078_RS12725 at 570.857 kb on + strand, within HMPREF1078_RS12725 at 570.857 kb on + strand, within HMPREF1078_RS12725 at 570.857 kb on + strand, within HMPREF1078_RS12725 at 570.860 kb on + strand, within HMPREF1078_RS12725 at 570.861 kb on - strand, within HMPREF1078_RS12725 at 570.986 kb on + strand, within HMPREF1078_RS12725 at 571.043 kb on + strand, within HMPREF1078_RS12725 at 571.043 kb on + strand, within HMPREF1078_RS12725 at 571.043 kb on + strand, within HMPREF1078_RS12725 at 571.044 kb on - strand, within HMPREF1078_RS12725 at 571.117 kb on + strand, within HMPREF1078_RS12725 at 571.200 kb on - strand, within HMPREF1078_RS12725 at 571.200 kb on - strand, within HMPREF1078_RS12725 at 571.208 kb on + strand, within HMPREF1078_RS12725 at 571.209 kb on - strand, within HMPREF1078_RS12725 at 571.209 kb on - strand, within HMPREF1078_RS12725 at 571.209 kb on - strand, within HMPREF1078_RS12725 at 571.223 kb on + strand, within HMPREF1078_RS12725 at 571.223 kb on + strand, within HMPREF1078_RS12725 at 571.224 kb on - strand, within HMPREF1078_RS12725 at 571.240 kb on - strand, within HMPREF1078_RS12725 at 571.366 kb on - strand, within HMPREF1078_RS12725 at 571.539 kb on + strand, within HMPREF1078_RS12725 at 571.540 kb on - strand, within HMPREF1078_RS12725 at 571.603 kb on - strand, within HMPREF1078_RS12725 at 571.603 kb on - strand, within HMPREF1078_RS12725 at 571.698 kb on - strand, within HMPREF1078_RS12725 at 571.722 kb on - strand, within HMPREF1078_RS12725 at 571.722 kb on - strand, within HMPREF1078_RS12725 at 571.722 kb on - strand, within HMPREF1078_RS12725 at 571.729 kb on + strand, within HMPREF1078_RS12725 at 571.731 kb on + strand, within HMPREF1078_RS12725 at 571.925 kb on + strand, within HMPREF1078_RS12725 at 571.953 kb on + strand, within HMPREF1078_RS12725 at 571.994 kb on - strand, within HMPREF1078_RS12725 at 572.056 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.069 kb on + strand, within HMPREF1078_RS12725 at 572.070 kb on - strand, within HMPREF1078_RS12725 at 572.071 kb on + strand, within HMPREF1078_RS12725 at 572.071 kb on + strand, within HMPREF1078_RS12725 at 572.071 kb on + strand, within HMPREF1078_RS12725 at 572.071 kb on + strand, within HMPREF1078_RS12725 at 572.072 kb on - strand, within HMPREF1078_RS12725 at 572.135 kb on + strand, within HMPREF1078_RS12725 at 572.170 kb on + strand, within HMPREF1078_RS12725 at 572.213 kb on - strand, within HMPREF1078_RS12725 at 572.288 kb on + strand at 572.289 kb on - strand at 572.340 kb on + strand at 572.340 kb on + strand at 572.340 kb on + strand at 572.340 kb on + strand at 572.341 kb on - strand at 572.403 kb on + strand at 572.404 kb on - strand at 572.490 kb on + strand at 572.490 kb on + strand at 572.491 kb on - strand at 572.507 kb on - strand at 572.554 kb on + strand at 572.554 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.573 kb on - strand at 572.578 kb on + strand at 572.579 kb on - strand at 572.582 kb on + strand at 572.582 kb on + strand at 572.582 kb on + strand at 572.582 kb on + strand at 572.583 kb on - strand at 572.583 kb on - strand at 572.583 kb on - strand at 572.584 kb on + strand at 572.584 kb on + strand at 572.584 kb on + strand at 572.586 kb on + strand at 572.586 kb on + strand at 572.586 kb on + strand at 572.587 kb on - strand at 572.587 kb on - strand at 572.587 kb on - strand at 572.587 kb on - strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.590 kb on + strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.591 kb on - strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.592 kb on + strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.593 kb on - strand at 572.595 kb on + strand at 572.595 kb on + strand at 572.596 kb on - strand at 572.643 kb on - strand at 572.646 kb on - strand at 572.646 kb on - strand at 572.662 kb on + strand at 572.663 kb on - strand at 572.703 kb on - strand at 572.707 kb on + strand at 572.708 kb on - strand at 572.708 kb on - strand at 572.708 kb on - strand at 572.784 kb on - strand, within HMPREF1078_RS12730 at 572.784 kb on - strand, within HMPREF1078_RS12730 at 572.816 kb on + strand, within HMPREF1078_RS12730 at 572.817 kb on - strand, within HMPREF1078_RS12730 at 572.895 kb on + strand, within HMPREF1078_RS12730 at 572.896 kb on - strand, within HMPREF1078_RS12730 at 572.943 kb on + strand, within HMPREF1078_RS12730 at 572.944 kb on - strand, within HMPREF1078_RS12730 at 572.944 kb on - strand, within HMPREF1078_RS12730 at 572.968 kb on + strand, within HMPREF1078_RS12730 at 572.968 kb on + strand, within HMPREF1078_RS12730 at 572.969 kb on - strand, within HMPREF1078_RS12730 at 572.969 kb on - strand, within HMPREF1078_RS12730 at 572.970 kb on + strand, within HMPREF1078_RS12730 at 572.971 kb on - strand, within HMPREF1078_RS12730 at 572.971 kb on - strand, within HMPREF1078_RS12730 at 573.017 kb on + strand, within HMPREF1078_RS12730 at 573.018 kb on - strand, within HMPREF1078_RS12730 at 573.029 kb on + strand, within HMPREF1078_RS12730 at 573.036 kb on + strand, within HMPREF1078_RS12730 at 573.037 kb on - strand, within HMPREF1078_RS12730 at 573.037 kb on - strand, within HMPREF1078_RS12730 at 573.037 kb on - strand, within HMPREF1078_RS12730 at 573.045 kb on - strand, within HMPREF1078_RS12730 at 573.091 kb on + strand, within HMPREF1078_RS12730 at 573.091 kb on + strand, within HMPREF1078_RS12730 at 573.119 kb on + strand, within HMPREF1078_RS12730 at 573.119 kb on + strand, within HMPREF1078_RS12730 at 573.239 kb on + strand, within HMPREF1078_RS12730 at 573.240 kb on - strand, within HMPREF1078_RS12730 at 573.283 kb on + strand, within HMPREF1078_RS12730 at 573.305 kb on + strand, within HMPREF1078_RS12730 at 573.305 kb on + strand, within HMPREF1078_RS12730 at 573.306 kb on - strand, within HMPREF1078_RS12730 at 573.306 kb on - strand, within HMPREF1078_RS12730 at 573.306 kb on - strand, within HMPREF1078_RS12730 at 573.306 kb on - strand, within HMPREF1078_RS12730 at 573.306 kb on - strand, within HMPREF1078_RS12730 at 573.311 kb on - strand, within HMPREF1078_RS12730 at 573.365 kb on + strand, within HMPREF1078_RS12730 at 573.366 kb on - strand, within HMPREF1078_RS12730 at 573.383 kb on - strand, within HMPREF1078_RS12730 at 573.383 kb on - strand, within HMPREF1078_RS12730 at 573.383 kb on - strand, within HMPREF1078_RS12730 at 573.464 kb on + strand, within HMPREF1078_RS12730 at 573.464 kb on + strand, within HMPREF1078_RS12730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 569,623 - HMPREF1078_RS12720 0.39 -3.0 569,644 + HMPREF1078_RS12720 0.41 +0.1 569,645 - HMPREF1078_RS12720 0.41 -0.4 569,735 + HMPREF1078_RS12720 0.48 -0.3 569,735 + HMPREF1078_RS12720 0.48 -0.3 569,735 + HMPREF1078_RS12720 0.48 -2.9 569,735 + HMPREF1078_RS12720 0.48 +1.0 569,736 - HMPREF1078_RS12720 0.48 +0.6 569,737 + HMPREF1078_RS12720 0.48 +1.4 569,738 - HMPREF1078_RS12720 0.48 -1.7 569,769 + HMPREF1078_RS12720 0.51 +1.0 569,770 - HMPREF1078_RS12720 0.51 -0.3 569,778 + HMPREF1078_RS12720 0.52 +1.9 569,779 - HMPREF1078_RS12720 0.52 -0.5 569,799 + HMPREF1078_RS12720 0.53 +1.9 569,799 + HMPREF1078_RS12720 0.53 -0.1 569,799 + HMPREF1078_RS12720 0.53 +1.0 569,800 - HMPREF1078_RS12720 0.53 +0.3 569,810 - HMPREF1078_RS12720 0.54 -0.7 569,831 + HMPREF1078_RS12720 0.56 +1.0 569,942 - HMPREF1078_RS12720 0.65 -1.3 569,984 - HMPREF1078_RS12720 0.68 -0.9 569,984 - HMPREF1078_RS12720 0.68 +0.1 570,109 - HMPREF1078_RS12720 0.78 +0.4 570,261 + -0.5 570,273 - +0.0 570,273 - -0.2 570,300 - -1.1 570,355 - -0.6 570,394 - +1.1 570,397 + +0.4 570,398 - +0.9 570,447 + -1.5 570,448 - +0.7 570,458 + -1.7 570,459 - +0.2 570,514 + +1.2 570,515 - -0.2 570,519 + -1.5 570,519 + -0.8 570,551 - -0.0 570,611 - +1.2 570,611 - -1.3 570,655 - +0.7 570,655 - +0.8 570,655 - +1.2 570,804 + HMPREF1078_RS12725 0.13 -2.3 570,857 + HMPREF1078_RS12725 0.16 -0.8 570,857 + HMPREF1078_RS12725 0.16 -1.8 570,857 + HMPREF1078_RS12725 0.16 -0.7 570,860 + HMPREF1078_RS12725 0.16 -0.7 570,861 - HMPREF1078_RS12725 0.16 +0.4 570,986 + HMPREF1078_RS12725 0.23 -1.1 571,043 + HMPREF1078_RS12725 0.26 -0.0 571,043 + HMPREF1078_RS12725 0.26 -1.8 571,043 + HMPREF1078_RS12725 0.26 +1.0 571,044 - HMPREF1078_RS12725 0.26 +0.2 571,117 + HMPREF1078_RS12725 0.30 -1.4 571,200 - HMPREF1078_RS12725 0.34 -0.3 571,200 - HMPREF1078_RS12725 0.34 +0.4 571,208 + HMPREF1078_RS12725 0.34 -0.7 571,209 - HMPREF1078_RS12725 0.34 +1.0 571,209 - HMPREF1078_RS12725 0.34 +0.7 571,209 - HMPREF1078_RS12725 0.34 -0.9 571,223 + HMPREF1078_RS12725 0.35 -1.2 571,223 + HMPREF1078_RS12725 0.35 -2.1 571,224 - HMPREF1078_RS12725 0.35 -3.6 571,240 - HMPREF1078_RS12725 0.36 +0.7 571,366 - HMPREF1078_RS12725 0.43 -0.5 571,539 + HMPREF1078_RS12725 0.52 -0.2 571,540 - HMPREF1078_RS12725 0.52 -1.5 571,603 - HMPREF1078_RS12725 0.55 +0.4 571,603 - HMPREF1078_RS12725 0.55 -1.9 571,698 - HMPREF1078_RS12725 0.60 -1.0 571,722 - HMPREF1078_RS12725 0.61 -0.7 571,722 - HMPREF1078_RS12725 0.61 -0.2 571,722 - HMPREF1078_RS12725 0.61 +0.7 571,729 + HMPREF1078_RS12725 0.62 -1.0 571,731 + HMPREF1078_RS12725 0.62 -2.0 571,925 + HMPREF1078_RS12725 0.72 -0.5 571,953 + HMPREF1078_RS12725 0.73 -2.5 571,994 - HMPREF1078_RS12725 0.75 -0.6 572,056 + HMPREF1078_RS12725 0.79 -1.8 572,069 + HMPREF1078_RS12725 0.79 +0.7 572,069 + HMPREF1078_RS12725 0.79 -1.2 572,069 + HMPREF1078_RS12725 0.79 -2.7 572,069 + HMPREF1078_RS12725 0.79 -1.1 572,069 + HMPREF1078_RS12725 0.79 +0.7 572,069 + HMPREF1078_RS12725 0.79 -0.0 572,070 - HMPREF1078_RS12725 0.79 -2.3 572,071 + HMPREF1078_RS12725 0.79 -1.9 572,071 + HMPREF1078_RS12725 0.79 -0.8 572,071 + HMPREF1078_RS12725 0.79 -0.7 572,071 + HMPREF1078_RS12725 0.79 -1.1 572,072 - HMPREF1078_RS12725 0.79 -0.5 572,135 + HMPREF1078_RS12725 0.83 -0.0 572,170 + HMPREF1078_RS12725 0.85 -0.5 572,213 - HMPREF1078_RS12725 0.87 -0.9 572,288 + -1.3 572,289 - -0.8 572,340 + -0.2 572,340 + -2.4 572,340 + -0.2 572,340 + -1.6 572,341 - -1.5 572,403 + -1.3 572,404 - -1.3 572,490 + -1.9 572,490 + -1.5 572,491 - -0.9 572,507 - -1.6 572,554 + -0.1 572,554 + -1.3 572,570 + +1.3 572,570 + -0.2 572,570 + -0.8 572,570 + -0.9 572,570 + -0.8 572,570 + -1.1 572,571 - -0.3 572,571 - +4.2 572,571 - -2.3 572,571 - -0.8 572,571 - -1.3 572,573 - +0.6 572,578 + -0.7 572,579 - +0.5 572,582 + -0.9 572,582 + +0.2 572,582 + +1.0 572,582 + -2.6 572,583 - +1.7 572,583 - -0.7 572,583 - -0.4 572,584 + +0.0 572,584 + +0.9 572,584 + +0.6 572,586 + +0.5 572,586 + +0.9 572,586 + -0.1 572,587 - -1.2 572,587 - -0.1 572,587 - +1.0 572,587 - -1.2 572,590 + -0.1 572,590 + -1.3 572,590 + -0.7 572,590 + +0.2 572,590 + +1.7 572,590 + +0.4 572,590 + -2.4 572,590 + -2.5 572,590 + +1.4 572,590 + +0.2 572,590 + +0.4 572,591 - -1.3 572,591 - -0.8 572,591 - -0.2 572,591 - -0.8 572,591 - -0.7 572,591 - +0.7 572,591 - -1.5 572,591 - -1.2 572,591 - -0.7 572,591 - +0.4 572,591 - -1.0 572,591 - +0.2 572,592 + -0.4 572,592 + -0.6 572,592 + -0.6 572,592 + +0.3 572,592 + +0.1 572,592 + -0.8 572,592 + +0.4 572,592 + -0.6 572,593 - -3.4 572,593 - -0.0 572,593 - +2.1 572,593 - -0.8 572,593 - -1.6 572,593 - +0.2 572,593 - -0.3 572,595 + -1.0 572,595 + +0.4 572,596 - -0.2 572,643 - -0.9 572,646 - -0.6 572,646 - -0.8 572,662 + -0.3 572,663 - +0.8 572,703 - +2.0 572,707 + -2.6 572,708 - +1.2 572,708 - +1.7 572,708 - +1.3 572,784 - HMPREF1078_RS12730 0.16 -0.1 572,784 - HMPREF1078_RS12730 0.16 -1.2 572,816 + HMPREF1078_RS12730 0.18 -0.0 572,817 - HMPREF1078_RS12730 0.18 +1.3 572,895 + HMPREF1078_RS12730 0.25 -0.2 572,896 - HMPREF1078_RS12730 0.25 -0.1 572,943 + HMPREF1078_RS12730 0.29 -0.9 572,944 - HMPREF1078_RS12730 0.29 -1.6 572,944 - HMPREF1078_RS12730 0.29 +0.2 572,968 + HMPREF1078_RS12730 0.31 -0.3 572,968 + HMPREF1078_RS12730 0.31 -2.3 572,969 - HMPREF1078_RS12730 0.31 -1.9 572,969 - HMPREF1078_RS12730 0.31 -0.5 572,970 + HMPREF1078_RS12730 0.31 +0.1 572,971 - HMPREF1078_RS12730 0.31 +0.4 572,971 - HMPREF1078_RS12730 0.31 -0.7 573,017 + HMPREF1078_RS12730 0.35 -0.9 573,018 - HMPREF1078_RS12730 0.35 -1.1 573,029 + HMPREF1078_RS12730 0.36 -1.0 573,036 + HMPREF1078_RS12730 0.36 +0.0 573,037 - HMPREF1078_RS12730 0.36 -0.6 573,037 - HMPREF1078_RS12730 0.36 +0.3 573,037 - HMPREF1078_RS12730 0.36 -1.2 573,045 - HMPREF1078_RS12730 0.37 +0.4 573,091 + HMPREF1078_RS12730 0.41 -0.5 573,091 + HMPREF1078_RS12730 0.41 -2.1 573,119 + HMPREF1078_RS12730 0.43 -1.1 573,119 + HMPREF1078_RS12730 0.43 -0.3 573,239 + HMPREF1078_RS12730 0.53 -1.8 573,240 - HMPREF1078_RS12730 0.53 +1.8 573,283 + HMPREF1078_RS12730 0.57 +0.4 573,305 + HMPREF1078_RS12730 0.59 -0.7 573,305 + HMPREF1078_RS12730 0.59 -0.8 573,306 - HMPREF1078_RS12730 0.59 +0.9 573,306 - HMPREF1078_RS12730 0.59 +0.7 573,306 - HMPREF1078_RS12730 0.59 +1.2 573,306 - HMPREF1078_RS12730 0.59 -2.8 573,306 - HMPREF1078_RS12730 0.59 +0.3 573,311 - HMPREF1078_RS12730 0.59 -0.3 573,365 + HMPREF1078_RS12730 0.64 -0.9 573,366 - HMPREF1078_RS12730 0.64 +0.4 573,383 - HMPREF1078_RS12730 0.65 -0.1 573,383 - HMPREF1078_RS12730 0.65 -0.2 573,383 - HMPREF1078_RS12730 0.65 +0.4 573,464 + HMPREF1078_RS12730 0.72 +1.4 573,464 + HMPREF1078_RS12730 0.72 +0.2
Or see this region's nucleotide sequence