Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS12725

Experiment: D-Maltose 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS12720 and HMPREF1078_RS12725 are separated by 174 nucleotidesHMPREF1078_RS12725 and HMPREF1078_RS12730 are separated by 131 nucleotides HMPREF1078_RS12720: HMPREF1078_RS12720 - sodium ion-translocating decarboxylase subunit beta, at 569,141 to 570,376 _RS12720 HMPREF1078_RS12725: HMPREF1078_RS12725 - DUF349 domain-containing protein, at 570,551 to 572,464 _RS12725 HMPREF1078_RS12730: HMPREF1078_RS12730 - hypothetical protein, at 572,596 to 573,804 _RS12730 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 569.623 kb on - strand, within HMPREF1078_RS12720at 569.644 kb on + strand, within HMPREF1078_RS12720at 569.645 kb on - strand, within HMPREF1078_RS12720at 569.735 kb on + strand, within HMPREF1078_RS12720at 569.735 kb on + strand, within HMPREF1078_RS12720at 569.735 kb on + strand, within HMPREF1078_RS12720at 569.735 kb on + strand, within HMPREF1078_RS12720at 569.736 kb on - strand, within HMPREF1078_RS12720at 569.737 kb on + strand, within HMPREF1078_RS12720at 569.738 kb on - strand, within HMPREF1078_RS12720at 569.769 kb on + strand, within HMPREF1078_RS12720at 569.770 kb on - strand, within HMPREF1078_RS12720at 569.778 kb on + strand, within HMPREF1078_RS12720at 569.779 kb on - strand, within HMPREF1078_RS12720at 569.799 kb on + strand, within HMPREF1078_RS12720at 569.799 kb on + strand, within HMPREF1078_RS12720at 569.799 kb on + strand, within HMPREF1078_RS12720at 569.800 kb on - strand, within HMPREF1078_RS12720at 569.810 kb on - strand, within HMPREF1078_RS12720at 569.831 kb on + strand, within HMPREF1078_RS12720at 569.942 kb on - strand, within HMPREF1078_RS12720at 569.984 kb on - strand, within HMPREF1078_RS12720at 569.984 kb on - strand, within HMPREF1078_RS12720at 570.109 kb on - strand, within HMPREF1078_RS12720at 570.261 kb on + strandat 570.273 kb on - strandat 570.273 kb on - strandat 570.300 kb on - strandat 570.355 kb on - strandat 570.394 kb on - strandat 570.397 kb on + strandat 570.398 kb on - strandat 570.447 kb on + strandat 570.448 kb on - strandat 570.458 kb on + strandat 570.459 kb on - strandat 570.514 kb on + strandat 570.515 kb on - strandat 570.519 kb on + strandat 570.519 kb on + strandat 570.551 kb on - strandat 570.611 kb on - strandat 570.611 kb on - strandat 570.655 kb on - strandat 570.655 kb on - strandat 570.655 kb on - strandat 570.804 kb on + strand, within HMPREF1078_RS12725at 570.857 kb on + strand, within HMPREF1078_RS12725at 570.857 kb on + strand, within HMPREF1078_RS12725at 570.857 kb on + strand, within HMPREF1078_RS12725at 570.860 kb on + strand, within HMPREF1078_RS12725at 570.861 kb on - strand, within HMPREF1078_RS12725at 570.986 kb on + strand, within HMPREF1078_RS12725at 571.043 kb on + strand, within HMPREF1078_RS12725at 571.043 kb on + strand, within HMPREF1078_RS12725at 571.043 kb on + strand, within HMPREF1078_RS12725at 571.044 kb on - strand, within HMPREF1078_RS12725at 571.117 kb on + strand, within HMPREF1078_RS12725at 571.200 kb on - strand, within HMPREF1078_RS12725at 571.200 kb on - strand, within HMPREF1078_RS12725at 571.208 kb on + strand, within HMPREF1078_RS12725at 571.209 kb on - strand, within HMPREF1078_RS12725at 571.209 kb on - strand, within HMPREF1078_RS12725at 571.209 kb on - strand, within HMPREF1078_RS12725at 571.223 kb on + strand, within HMPREF1078_RS12725at 571.223 kb on + strand, within HMPREF1078_RS12725at 571.224 kb on - strand, within HMPREF1078_RS12725at 571.240 kb on - strand, within HMPREF1078_RS12725at 571.366 kb on - strand, within HMPREF1078_RS12725at 571.539 kb on + strand, within HMPREF1078_RS12725at 571.540 kb on - strand, within HMPREF1078_RS12725at 571.603 kb on - strand, within HMPREF1078_RS12725at 571.603 kb on - strand, within HMPREF1078_RS12725at 571.698 kb on - strand, within HMPREF1078_RS12725at 571.722 kb on - strand, within HMPREF1078_RS12725at 571.722 kb on - strand, within HMPREF1078_RS12725at 571.722 kb on - strand, within HMPREF1078_RS12725at 571.729 kb on + strand, within HMPREF1078_RS12725at 571.731 kb on + strand, within HMPREF1078_RS12725at 571.925 kb on + strand, within HMPREF1078_RS12725at 571.953 kb on + strand, within HMPREF1078_RS12725at 571.994 kb on - strand, within HMPREF1078_RS12725at 572.056 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.069 kb on + strand, within HMPREF1078_RS12725at 572.070 kb on - strand, within HMPREF1078_RS12725at 572.071 kb on + strand, within HMPREF1078_RS12725at 572.071 kb on + strand, within HMPREF1078_RS12725at 572.071 kb on + strand, within HMPREF1078_RS12725at 572.071 kb on + strand, within HMPREF1078_RS12725at 572.072 kb on - strand, within HMPREF1078_RS12725at 572.135 kb on + strand, within HMPREF1078_RS12725at 572.170 kb on + strand, within HMPREF1078_RS12725at 572.213 kb on - strand, within HMPREF1078_RS12725at 572.288 kb on + strandat 572.289 kb on - strandat 572.340 kb on + strandat 572.340 kb on + strandat 572.340 kb on + strandat 572.340 kb on + strandat 572.341 kb on - strandat 572.403 kb on + strandat 572.404 kb on - strandat 572.490 kb on + strandat 572.490 kb on + strandat 572.491 kb on - strandat 572.507 kb on - strandat 572.554 kb on + strandat 572.554 kb on + strandat 572.570 kb on + strandat 572.570 kb on + strandat 572.570 kb on + strandat 572.570 kb on + strandat 572.570 kb on + strandat 572.570 kb on + strandat 572.571 kb on - strandat 572.571 kb on - strandat 572.571 kb on - strandat 572.571 kb on - strandat 572.571 kb on - strandat 572.573 kb on - strandat 572.578 kb on + strandat 572.579 kb on - strandat 572.582 kb on + strandat 572.582 kb on + strandat 572.582 kb on + strandat 572.582 kb on + strandat 572.583 kb on - strandat 572.583 kb on - strandat 572.583 kb on - strandat 572.584 kb on + strandat 572.584 kb on + strandat 572.584 kb on + strandat 572.586 kb on + strandat 572.586 kb on + strandat 572.586 kb on + strandat 572.587 kb on - strandat 572.587 kb on - strandat 572.587 kb on - strandat 572.587 kb on - strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.590 kb on + strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.591 kb on - strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.592 kb on + strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.593 kb on - strandat 572.595 kb on + strandat 572.595 kb on + strandat 572.596 kb on - strandat 572.643 kb on - strandat 572.646 kb on - strandat 572.646 kb on - strandat 572.662 kb on + strandat 572.663 kb on - strandat 572.703 kb on - strandat 572.707 kb on + strandat 572.708 kb on - strandat 572.708 kb on - strandat 572.708 kb on - strandat 572.784 kb on - strand, within HMPREF1078_RS12730at 572.784 kb on - strand, within HMPREF1078_RS12730at 572.816 kb on + strand, within HMPREF1078_RS12730at 572.817 kb on - strand, within HMPREF1078_RS12730at 572.895 kb on + strand, within HMPREF1078_RS12730at 572.896 kb on - strand, within HMPREF1078_RS12730at 572.943 kb on + strand, within HMPREF1078_RS12730at 572.944 kb on - strand, within HMPREF1078_RS12730at 572.944 kb on - strand, within HMPREF1078_RS12730at 572.968 kb on + strand, within HMPREF1078_RS12730at 572.968 kb on + strand, within HMPREF1078_RS12730at 572.969 kb on - strand, within HMPREF1078_RS12730at 572.969 kb on - strand, within HMPREF1078_RS12730at 572.970 kb on + strand, within HMPREF1078_RS12730at 572.971 kb on - strand, within HMPREF1078_RS12730at 572.971 kb on - strand, within HMPREF1078_RS12730at 573.017 kb on + strand, within HMPREF1078_RS12730at 573.018 kb on - strand, within HMPREF1078_RS12730at 573.029 kb on + strand, within HMPREF1078_RS12730at 573.036 kb on + strand, within HMPREF1078_RS12730at 573.037 kb on - strand, within HMPREF1078_RS12730at 573.037 kb on - strand, within HMPREF1078_RS12730at 573.037 kb on - strand, within HMPREF1078_RS12730at 573.045 kb on - strand, within HMPREF1078_RS12730at 573.091 kb on + strand, within HMPREF1078_RS12730at 573.091 kb on + strand, within HMPREF1078_RS12730at 573.119 kb on + strand, within HMPREF1078_RS12730at 573.119 kb on + strand, within HMPREF1078_RS12730at 573.239 kb on + strand, within HMPREF1078_RS12730at 573.240 kb on - strand, within HMPREF1078_RS12730at 573.283 kb on + strand, within HMPREF1078_RS12730at 573.305 kb on + strand, within HMPREF1078_RS12730at 573.305 kb on + strand, within HMPREF1078_RS12730at 573.306 kb on - strand, within HMPREF1078_RS12730at 573.306 kb on - strand, within HMPREF1078_RS12730at 573.306 kb on - strand, within HMPREF1078_RS12730at 573.306 kb on - strand, within HMPREF1078_RS12730at 573.306 kb on - strand, within HMPREF1078_RS12730at 573.311 kb on - strand, within HMPREF1078_RS12730at 573.365 kb on + strand, within HMPREF1078_RS12730at 573.366 kb on - strand, within HMPREF1078_RS12730at 573.383 kb on - strand, within HMPREF1078_RS12730at 573.383 kb on - strand, within HMPREF1078_RS12730at 573.383 kb on - strand, within HMPREF1078_RS12730at 573.464 kb on + strand, within HMPREF1078_RS12730at 573.464 kb on + strand, within HMPREF1078_RS12730

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
remove
569,623 - HMPREF1078_RS12720 0.39 -3.0
569,644 + HMPREF1078_RS12720 0.41 +0.1
569,645 - HMPREF1078_RS12720 0.41 -0.4
569,735 + HMPREF1078_RS12720 0.48 -0.3
569,735 + HMPREF1078_RS12720 0.48 -0.3
569,735 + HMPREF1078_RS12720 0.48 -2.9
569,735 + HMPREF1078_RS12720 0.48 +1.0
569,736 - HMPREF1078_RS12720 0.48 +0.6
569,737 + HMPREF1078_RS12720 0.48 +1.4
569,738 - HMPREF1078_RS12720 0.48 -1.7
569,769 + HMPREF1078_RS12720 0.51 +1.0
569,770 - HMPREF1078_RS12720 0.51 -0.3
569,778 + HMPREF1078_RS12720 0.52 +1.9
569,779 - HMPREF1078_RS12720 0.52 -0.5
569,799 + HMPREF1078_RS12720 0.53 +1.9
569,799 + HMPREF1078_RS12720 0.53 -0.1
569,799 + HMPREF1078_RS12720 0.53 +1.0
569,800 - HMPREF1078_RS12720 0.53 +0.3
569,810 - HMPREF1078_RS12720 0.54 -0.7
569,831 + HMPREF1078_RS12720 0.56 +1.0
569,942 - HMPREF1078_RS12720 0.65 -1.3
569,984 - HMPREF1078_RS12720 0.68 -0.9
569,984 - HMPREF1078_RS12720 0.68 +0.1
570,109 - HMPREF1078_RS12720 0.78 +0.4
570,261 + -0.5
570,273 - +0.0
570,273 - -0.2
570,300 - -1.1
570,355 - -0.6
570,394 - +1.1
570,397 + +0.4
570,398 - +0.9
570,447 + -1.5
570,448 - +0.7
570,458 + -1.7
570,459 - +0.2
570,514 + +1.2
570,515 - -0.2
570,519 + -1.5
570,519 + -0.8
570,551 - -0.0
570,611 - +1.2
570,611 - -1.3
570,655 - +0.7
570,655 - +0.8
570,655 - +1.2
570,804 + HMPREF1078_RS12725 0.13 -2.3
570,857 + HMPREF1078_RS12725 0.16 -0.8
570,857 + HMPREF1078_RS12725 0.16 -1.8
570,857 + HMPREF1078_RS12725 0.16 -0.7
570,860 + HMPREF1078_RS12725 0.16 -0.7
570,861 - HMPREF1078_RS12725 0.16 +0.4
570,986 + HMPREF1078_RS12725 0.23 -1.1
571,043 + HMPREF1078_RS12725 0.26 -0.0
571,043 + HMPREF1078_RS12725 0.26 -1.8
571,043 + HMPREF1078_RS12725 0.26 +1.0
571,044 - HMPREF1078_RS12725 0.26 +0.2
571,117 + HMPREF1078_RS12725 0.30 -1.4
571,200 - HMPREF1078_RS12725 0.34 -0.3
571,200 - HMPREF1078_RS12725 0.34 +0.4
571,208 + HMPREF1078_RS12725 0.34 -0.7
571,209 - HMPREF1078_RS12725 0.34 +1.0
571,209 - HMPREF1078_RS12725 0.34 +0.7
571,209 - HMPREF1078_RS12725 0.34 -0.9
571,223 + HMPREF1078_RS12725 0.35 -1.2
571,223 + HMPREF1078_RS12725 0.35 -2.1
571,224 - HMPREF1078_RS12725 0.35 -3.6
571,240 - HMPREF1078_RS12725 0.36 +0.7
571,366 - HMPREF1078_RS12725 0.43 -0.5
571,539 + HMPREF1078_RS12725 0.52 -0.2
571,540 - HMPREF1078_RS12725 0.52 -1.5
571,603 - HMPREF1078_RS12725 0.55 +0.4
571,603 - HMPREF1078_RS12725 0.55 -1.9
571,698 - HMPREF1078_RS12725 0.60 -1.0
571,722 - HMPREF1078_RS12725 0.61 -0.7
571,722 - HMPREF1078_RS12725 0.61 -0.2
571,722 - HMPREF1078_RS12725 0.61 +0.7
571,729 + HMPREF1078_RS12725 0.62 -1.0
571,731 + HMPREF1078_RS12725 0.62 -2.0
571,925 + HMPREF1078_RS12725 0.72 -0.5
571,953 + HMPREF1078_RS12725 0.73 -2.5
571,994 - HMPREF1078_RS12725 0.75 -0.6
572,056 + HMPREF1078_RS12725 0.79 -1.8
572,069 + HMPREF1078_RS12725 0.79 +0.7
572,069 + HMPREF1078_RS12725 0.79 -1.2
572,069 + HMPREF1078_RS12725 0.79 -2.7
572,069 + HMPREF1078_RS12725 0.79 -1.1
572,069 + HMPREF1078_RS12725 0.79 +0.7
572,069 + HMPREF1078_RS12725 0.79 -0.0
572,070 - HMPREF1078_RS12725 0.79 -2.3
572,071 + HMPREF1078_RS12725 0.79 -1.9
572,071 + HMPREF1078_RS12725 0.79 -0.8
572,071 + HMPREF1078_RS12725 0.79 -0.7
572,071 + HMPREF1078_RS12725 0.79 -1.1
572,072 - HMPREF1078_RS12725 0.79 -0.5
572,135 + HMPREF1078_RS12725 0.83 -0.0
572,170 + HMPREF1078_RS12725 0.85 -0.5
572,213 - HMPREF1078_RS12725 0.87 -0.9
572,288 + -1.3
572,289 - -0.8
572,340 + -0.2
572,340 + -2.4
572,340 + -0.2
572,340 + -1.6
572,341 - -1.5
572,403 + -1.3
572,404 - -1.3
572,490 + -1.9
572,490 + -1.5
572,491 - -0.9
572,507 - -1.6
572,554 + -0.1
572,554 + -1.3
572,570 + +1.3
572,570 + -0.2
572,570 + -0.8
572,570 + -0.9
572,570 + -0.8
572,570 + -1.1
572,571 - -0.3
572,571 - +4.2
572,571 - -2.3
572,571 - -0.8
572,571 - -1.3
572,573 - +0.6
572,578 + -0.7
572,579 - +0.5
572,582 + -0.9
572,582 + +0.2
572,582 + +1.0
572,582 + -2.6
572,583 - +1.7
572,583 - -0.7
572,583 - -0.4
572,584 + +0.0
572,584 + +0.9
572,584 + +0.6
572,586 + +0.5
572,586 + +0.9
572,586 + -0.1
572,587 - -1.2
572,587 - -0.1
572,587 - +1.0
572,587 - -1.2
572,590 + -0.1
572,590 + -1.3
572,590 + -0.7
572,590 + +0.2
572,590 + +1.7
572,590 + +0.4
572,590 + -2.4
572,590 + -2.5
572,590 + +1.4
572,590 + +0.2
572,590 + +0.4
572,591 - -1.3
572,591 - -0.8
572,591 - -0.2
572,591 - -0.8
572,591 - -0.7
572,591 - +0.7
572,591 - -1.5
572,591 - -1.2
572,591 - -0.7
572,591 - +0.4
572,591 - -1.0
572,591 - +0.2
572,592 + -0.4
572,592 + -0.6
572,592 + -0.6
572,592 + +0.3
572,592 + +0.1
572,592 + -0.8
572,592 + +0.4
572,592 + -0.6
572,593 - -3.4
572,593 - -0.0
572,593 - +2.1
572,593 - -0.8
572,593 - -1.6
572,593 - +0.2
572,593 - -0.3
572,595 + -1.0
572,595 + +0.4
572,596 - -0.2
572,643 - -0.9
572,646 - -0.6
572,646 - -0.8
572,662 + -0.3
572,663 - +0.8
572,703 - +2.0
572,707 + -2.6
572,708 - +1.2
572,708 - +1.7
572,708 - +1.3
572,784 - HMPREF1078_RS12730 0.16 -0.1
572,784 - HMPREF1078_RS12730 0.16 -1.2
572,816 + HMPREF1078_RS12730 0.18 -0.0
572,817 - HMPREF1078_RS12730 0.18 +1.3
572,895 + HMPREF1078_RS12730 0.25 -0.2
572,896 - HMPREF1078_RS12730 0.25 -0.1
572,943 + HMPREF1078_RS12730 0.29 -0.9
572,944 - HMPREF1078_RS12730 0.29 -1.6
572,944 - HMPREF1078_RS12730 0.29 +0.2
572,968 + HMPREF1078_RS12730 0.31 -0.3
572,968 + HMPREF1078_RS12730 0.31 -2.3
572,969 - HMPREF1078_RS12730 0.31 -1.9
572,969 - HMPREF1078_RS12730 0.31 -0.5
572,970 + HMPREF1078_RS12730 0.31 +0.1
572,971 - HMPREF1078_RS12730 0.31 +0.4
572,971 - HMPREF1078_RS12730 0.31 -0.7
573,017 + HMPREF1078_RS12730 0.35 -0.9
573,018 - HMPREF1078_RS12730 0.35 -1.1
573,029 + HMPREF1078_RS12730 0.36 -1.0
573,036 + HMPREF1078_RS12730 0.36 +0.0
573,037 - HMPREF1078_RS12730 0.36 -0.6
573,037 - HMPREF1078_RS12730 0.36 +0.3
573,037 - HMPREF1078_RS12730 0.36 -1.2
573,045 - HMPREF1078_RS12730 0.37 +0.4
573,091 + HMPREF1078_RS12730 0.41 -0.5
573,091 + HMPREF1078_RS12730 0.41 -2.1
573,119 + HMPREF1078_RS12730 0.43 -1.1
573,119 + HMPREF1078_RS12730 0.43 -0.3
573,239 + HMPREF1078_RS12730 0.53 -1.8
573,240 - HMPREF1078_RS12730 0.53 +1.8
573,283 + HMPREF1078_RS12730 0.57 +0.4
573,305 + HMPREF1078_RS12730 0.59 -0.7
573,305 + HMPREF1078_RS12730 0.59 -0.8
573,306 - HMPREF1078_RS12730 0.59 +0.9
573,306 - HMPREF1078_RS12730 0.59 +0.7
573,306 - HMPREF1078_RS12730 0.59 +1.2
573,306 - HMPREF1078_RS12730 0.59 -2.8
573,306 - HMPREF1078_RS12730 0.59 +0.3
573,311 - HMPREF1078_RS12730 0.59 -0.3
573,365 + HMPREF1078_RS12730 0.64 -0.9
573,366 - HMPREF1078_RS12730 0.64 +0.4
573,383 - HMPREF1078_RS12730 0.65 -0.1
573,383 - HMPREF1078_RS12730 0.65 -0.2
573,383 - HMPREF1078_RS12730 0.65 +0.4
573,464 + HMPREF1078_RS12730 0.72 +1.4
573,464 + HMPREF1078_RS12730 0.72 +0.2

Or see this region's nucleotide sequence