Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10655

Experiment: D-Maltose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10650 and HMPREF1078_RS10655 are separated by 19 nucleotidesHMPREF1078_RS10655 and HMPREF1078_RS10660 are separated by 119 nucleotides HMPREF1078_RS10650: HMPREF1078_RS10650 - glutamate 5-kinase, at 33,473 to 34,597 _RS10650 HMPREF1078_RS10655: HMPREF1078_RS10655 - glutamate-5-semialdehyde dehydrogenase, at 34,617 to 35,861 _RS10655 HMPREF1078_RS10660: HMPREF1078_RS10660 - acetylornithine carbamoyltransferase, at 35,981 to 36,946 _RS10660 Position (kb) 34 35 36Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 33.628 kb on - strand, within HMPREF1078_RS10650at 33.628 kb on - strand, within HMPREF1078_RS10650at 33.694 kb on - strand, within HMPREF1078_RS10650at 33.737 kb on + strand, within HMPREF1078_RS10650at 33.737 kb on + strand, within HMPREF1078_RS10650at 33.855 kb on - strand, within HMPREF1078_RS10650at 33.875 kb on - strand, within HMPREF1078_RS10650at 33.875 kb on - strand, within HMPREF1078_RS10650at 33.882 kb on + strand, within HMPREF1078_RS10650at 33.882 kb on + strand, within HMPREF1078_RS10650at 33.883 kb on - strand, within HMPREF1078_RS10650at 33.883 kb on - strand, within HMPREF1078_RS10650at 33.895 kb on + strand, within HMPREF1078_RS10650at 34.035 kb on + strand, within HMPREF1078_RS10650at 34.039 kb on + strand, within HMPREF1078_RS10650at 34.112 kb on + strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.113 kb on - strand, within HMPREF1078_RS10650at 34.156 kb on + strand, within HMPREF1078_RS10650at 34.356 kb on + strand, within HMPREF1078_RS10650at 34.357 kb on - strand, within HMPREF1078_RS10650at 34.357 kb on - strand, within HMPREF1078_RS10650at 34.389 kb on + strand, within HMPREF1078_RS10650at 34.390 kb on - strand, within HMPREF1078_RS10650at 34.523 kb on - strandat 34.569 kb on + strandat 34.570 kb on - strandat 34.575 kb on - strandat 34.611 kb on - strandat 34.611 kb on - strandat 34.630 kb on + strandat 34.640 kb on + strandat 34.641 kb on - strandat 34.703 kb on - strandat 34.772 kb on + strand, within HMPREF1078_RS10655at 34.963 kb on - strand, within HMPREF1078_RS10655at 34.963 kb on - strand, within HMPREF1078_RS10655at 35.093 kb on - strand, within HMPREF1078_RS10655at 35.127 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.227 kb on - strand, within HMPREF1078_RS10655at 35.273 kb on + strand, within HMPREF1078_RS10655at 35.282 kb on + strand, within HMPREF1078_RS10655at 35.283 kb on - strand, within HMPREF1078_RS10655at 35.402 kb on - strand, within HMPREF1078_RS10655at 35.415 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.450 kb on + strand, within HMPREF1078_RS10655at 35.451 kb on - strand, within HMPREF1078_RS10655at 35.454 kb on + strand, within HMPREF1078_RS10655at 35.548 kb on + strand, within HMPREF1078_RS10655at 35.570 kb on + strand, within HMPREF1078_RS10655at 35.613 kb on + strand, within HMPREF1078_RS10655at 35.700 kb on + strand, within HMPREF1078_RS10655at 35.710 kb on + strand, within HMPREF1078_RS10655at 35.710 kb on + strand, within HMPREF1078_RS10655at 35.711 kb on - strand, within HMPREF1078_RS10655at 35.714 kb on + strand, within HMPREF1078_RS10655at 35.779 kb on + strandat 35.779 kb on + strandat 35.779 kb on + strandat 35.780 kb on - strandat 35.820 kb on + strandat 35.826 kb on + strandat 35.826 kb on + strandat 35.826 kb on + strandat 35.827 kb on - strandat 35.828 kb on + strandat 35.828 kb on + strandat 35.829 kb on - strandat 35.829 kb on - strandat 35.859 kb on + strandat 35.877 kb on + strandat 35.878 kb on - strandat 35.881 kb on - strandat 35.881 kb on - strandat 35.883 kb on + strandat 35.888 kb on + strandat 35.888 kb on + strandat 35.889 kb on - strandat 35.902 kb on + strandat 35.908 kb on + strandat 35.909 kb on - strandat 35.980 kb on + strandat 35.980 kb on + strandat 36.000 kb on + strandat 36.001 kb on - strandat 36.105 kb on + strand, within HMPREF1078_RS10660at 36.105 kb on + strand, within HMPREF1078_RS10660at 36.105 kb on + strand, within HMPREF1078_RS10660at 36.163 kb on - strand, within HMPREF1078_RS10660at 36.163 kb on - strand, within HMPREF1078_RS10660at 36.167 kb on - strand, within HMPREF1078_RS10660at 36.288 kb on - strand, within HMPREF1078_RS10660at 36.306 kb on + strand, within HMPREF1078_RS10660at 36.306 kb on + strand, within HMPREF1078_RS10660at 36.307 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.358 kb on - strand, within HMPREF1078_RS10660at 36.461 kb on + strand, within HMPREF1078_RS10660at 36.636 kb on + strand, within HMPREF1078_RS10660at 36.641 kb on + strand, within HMPREF1078_RS10660at 36.642 kb on - strand, within HMPREF1078_RS10660at 36.642 kb on - strand, within HMPREF1078_RS10660at 36.680 kb on + strand, within HMPREF1078_RS10660at 36.681 kb on - strand, within HMPREF1078_RS10660at 36.701 kb on + strand, within HMPREF1078_RS10660at 36.717 kb on - strand, within HMPREF1078_RS10660at 36.820 kb on + strand, within HMPREF1078_RS10660at 36.820 kb on + strand, within HMPREF1078_RS10660at 36.821 kb on - strand, within HMPREF1078_RS10660

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
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33,628 - HMPREF1078_RS10650 0.14 -0.3
33,628 - HMPREF1078_RS10650 0.14 -3.5
33,694 - HMPREF1078_RS10650 0.20 -4.2
33,737 + HMPREF1078_RS10650 0.23 +0.2
33,737 + HMPREF1078_RS10650 0.23 -2.7
33,855 - HMPREF1078_RS10650 0.34 -2.5
33,875 - HMPREF1078_RS10650 0.36 +0.7
33,875 - HMPREF1078_RS10650 0.36 -2.4
33,882 + HMPREF1078_RS10650 0.36 -3.7
33,882 + HMPREF1078_RS10650 0.36 -2.3
33,883 - HMPREF1078_RS10650 0.36 -3.7
33,883 - HMPREF1078_RS10650 0.36 -3.9
33,895 + HMPREF1078_RS10650 0.38 -3.7
34,035 + HMPREF1078_RS10650 0.50 -2.4
34,039 + HMPREF1078_RS10650 0.50 -3.8
34,112 + HMPREF1078_RS10650 0.57 -1.2
34,113 - HMPREF1078_RS10650 0.57 -2.0
34,113 - HMPREF1078_RS10650 0.57 -1.3
34,113 - HMPREF1078_RS10650 0.57 -0.5
34,156 + HMPREF1078_RS10650 0.61 -3.1
34,356 + HMPREF1078_RS10650 0.78 -1.3
34,357 - HMPREF1078_RS10650 0.79 -1.9
34,357 - HMPREF1078_RS10650 0.79 -2.1
34,389 + HMPREF1078_RS10650 0.81 -3.3
34,390 - HMPREF1078_RS10650 0.82 -3.2
34,523 - -4.3
34,569 + -4.5
34,570 - -2.1
34,575 - -1.3
34,611 - -1.3
34,611 - -2.4
34,630 + -3.1
34,640 + -1.8
34,641 - -3.4
34,703 - -3.7
34,772 + HMPREF1078_RS10655 0.12 -2.5
34,963 - HMPREF1078_RS10655 0.28 +1.0
34,963 - HMPREF1078_RS10655 0.28 -3.8
35,093 - HMPREF1078_RS10655 0.38 -2.6
35,127 - HMPREF1078_RS10655 0.41 -1.6
35,227 - HMPREF1078_RS10655 0.49 -1.8
35,227 - HMPREF1078_RS10655 0.49 -0.6
35,273 + HMPREF1078_RS10655 0.53 -2.6
35,282 + HMPREF1078_RS10655 0.53 -2.9
35,283 - HMPREF1078_RS10655 0.53 -2.0
35,402 - HMPREF1078_RS10655 0.63 -0.5
35,415 + HMPREF1078_RS10655 0.64 -4.4
35,450 + HMPREF1078_RS10655 0.67 -3.2
35,450 + HMPREF1078_RS10655 0.67 -1.0
35,450 + HMPREF1078_RS10655 0.67 -1.5
35,450 + HMPREF1078_RS10655 0.67 -3.9
35,451 - HMPREF1078_RS10655 0.67 -3.5
35,454 + HMPREF1078_RS10655 0.67 -1.5
35,548 + HMPREF1078_RS10655 0.75 -3.2
35,570 + HMPREF1078_RS10655 0.77 -2.2
35,613 + HMPREF1078_RS10655 0.80 -3.2
35,700 + HMPREF1078_RS10655 0.87 -4.2
35,710 + HMPREF1078_RS10655 0.88 -0.0
35,710 + HMPREF1078_RS10655 0.88 -0.6
35,711 - HMPREF1078_RS10655 0.88 -4.1
35,714 + HMPREF1078_RS10655 0.88 -2.7
35,779 + -2.7
35,779 + -3.6
35,779 + -2.0
35,780 - -3.8
35,820 + -0.6
35,826 + -0.8
35,826 + -3.6
35,826 + -3.1
35,827 - -1.3
35,828 + -1.1
35,828 + -3.1
35,829 - -2.0
35,829 - -6.3
35,859 + -1.8
35,877 + -0.5
35,878 - -0.5
35,881 - +0.2
35,881 - +0.0
35,883 + -1.2
35,888 + +1.0
35,888 + +1.1
35,889 - -0.9
35,902 + +0.5
35,908 + -1.0
35,909 - +0.2
35,980 + -2.7
35,980 + -4.6
36,000 + -3.6
36,001 - -3.7
36,105 + HMPREF1078_RS10660 0.13 -3.1
36,105 + HMPREF1078_RS10660 0.13 -1.5
36,105 + HMPREF1078_RS10660 0.13 -3.5
36,163 - HMPREF1078_RS10660 0.19 -3.1
36,163 - HMPREF1078_RS10660 0.19 -2.9
36,167 - HMPREF1078_RS10660 0.19 -3.1
36,288 - HMPREF1078_RS10660 0.32 -3.3
36,306 + HMPREF1078_RS10660 0.34 -4.0
36,306 + HMPREF1078_RS10660 0.34 -1.3
36,307 - HMPREF1078_RS10660 0.34 -0.5
36,358 - HMPREF1078_RS10660 0.39 -3.7
36,358 - HMPREF1078_RS10660 0.39 -3.4
36,358 - HMPREF1078_RS10660 0.39 -3.4
36,461 + HMPREF1078_RS10660 0.50 -4.1
36,636 + HMPREF1078_RS10660 0.68 -3.5
36,641 + HMPREF1078_RS10660 0.68 -3.8
36,642 - HMPREF1078_RS10660 0.68 -3.9
36,642 - HMPREF1078_RS10660 0.68 -4.2
36,680 + HMPREF1078_RS10660 0.72 -2.7
36,681 - HMPREF1078_RS10660 0.72 -0.3
36,701 + HMPREF1078_RS10660 0.75 -0.7
36,717 - HMPREF1078_RS10660 0.76 -4.8
36,820 + HMPREF1078_RS10660 0.87 -4.5
36,820 + HMPREF1078_RS10660 0.87 -0.6
36,821 - HMPREF1078_RS10660 0.87 -2.3

Or see this region's nucleotide sequence