Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10560 and HMPREF1078_RS10565 are separated by 182 nucleotides HMPREF1078_RS10565 and HMPREF1078_RS10570 are separated by 72 nucleotides HMPREF1078_RS10570 and HMPREF1078_RS10575 are separated by 42 nucleotides
HMPREF1078_RS10560: HMPREF1078_RS10560 - M48 family metallopeptidase, at 11,707 to 12,504
_RS10560
HMPREF1078_RS10565: HMPREF1078_RS10565 - arginine repressor, at 12,687 to 13,130
_RS10565
HMPREF1078_RS10570: HMPREF1078_RS10570 - GNAT family N-acetyltransferase, at 13,203 to 13,784
_RS10570
HMPREF1078_RS10575: HMPREF1078_RS10575 - argininosuccinate synthase, at 13,827 to 15,026
_RS10575
Position (kb) 12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 11.692 kb on + strand at 11.693 kb on - strand at 11.693 kb on - strand at 11.693 kb on - strand at 11.724 kb on - strand at 11.724 kb on - strand at 11.732 kb on - strand at 11.732 kb on - strand at 11.751 kb on + strand at 11.862 kb on + strand, within HMPREF1078_RS10560 at 11.896 kb on - strand, within HMPREF1078_RS10560 at 11.898 kb on - strand, within HMPREF1078_RS10560 at 11.937 kb on + strand, within HMPREF1078_RS10560 at 11.937 kb on + strand, within HMPREF1078_RS10560 at 11.938 kb on - strand, within HMPREF1078_RS10560 at 11.938 kb on - strand, within HMPREF1078_RS10560 at 11.945 kb on + strand, within HMPREF1078_RS10560 at 11.945 kb on + strand, within HMPREF1078_RS10560 at 11.946 kb on - strand, within HMPREF1078_RS10560 at 12.000 kb on + strand, within HMPREF1078_RS10560 at 12.003 kb on + strand, within HMPREF1078_RS10560 at 12.003 kb on + strand, within HMPREF1078_RS10560 at 12.008 kb on - strand, within HMPREF1078_RS10560 at 12.035 kb on + strand, within HMPREF1078_RS10560 at 12.036 kb on - strand, within HMPREF1078_RS10560 at 12.060 kb on + strand, within HMPREF1078_RS10560 at 12.061 kb on - strand, within HMPREF1078_RS10560 at 12.219 kb on + strand, within HMPREF1078_RS10560 at 12.273 kb on - strand, within HMPREF1078_RS10560 at 12.300 kb on + strand, within HMPREF1078_RS10560 at 12.360 kb on + strand, within HMPREF1078_RS10560 at 12.361 kb on - strand, within HMPREF1078_RS10560 at 12.362 kb on + strand, within HMPREF1078_RS10560 at 12.460 kb on + strand at 12.460 kb on + strand at 12.460 kb on + strand at 12.492 kb on + strand at 12.523 kb on - strand at 12.555 kb on + strand at 12.589 kb on - strand at 12.655 kb on + strand at 12.655 kb on + strand at 12.692 kb on + strand at 12.730 kb on + strand at 12.731 kb on - strand at 12.731 kb on - strand at 12.731 kb on - strand at 12.745 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.823 kb on + strand, within HMPREF1078_RS10565 at 12.824 kb on - strand, within HMPREF1078_RS10565 at 12.847 kb on + strand, within HMPREF1078_RS10565 at 12.847 kb on + strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 13.014 kb on - strand, within HMPREF1078_RS10565 at 13.133 kb on + strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.136 kb on - strand at 13.136 kb on - strand at 13.137 kb on + strand at 13.138 kb on - strand at 13.138 kb on - strand at 13.140 kb on - strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.171 kb on + strand at 13.184 kb on + strand at 13.199 kb on - strand at 13.257 kb on + strand at 13.258 kb on - strand at 13.261 kb on + strand at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.266 kb on - strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.379 kb on - strand, within HMPREF1078_RS10570 at 13.433 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.597 kb on + strand, within HMPREF1078_RS10570 at 13.598 kb on - strand, within HMPREF1078_RS10570 at 13.602 kb on + strand, within HMPREF1078_RS10570 at 13.790 kb on - strand at 13.813 kb on + strand at 13.821 kb on + strand at 13.840 kb on + strand at 13.843 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.887 kb on + strand at 13.887 kb on + strand at 13.917 kb on + strand at 13.918 kb on - strand at 13.918 kb on - strand at 13.942 kb on - strand at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 14.000 kb on + strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.021 kb on - strand, within HMPREF1078_RS10575 at 14.052 kb on + strand, within HMPREF1078_RS10575 at 14.054 kb on + strand, within HMPREF1078_RS10575 at 14.071 kb on + strand, within HMPREF1078_RS10575 at 14.084 kb on + strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 11,692 + -1.0 11,693 - -0.5 11,693 - +0.8 11,693 - +1.3 11,724 - -0.0 11,724 - -2.3 11,732 - -0.1 11,732 - -1.4 11,751 + -1.9 11,862 + HMPREF1078_RS10560 0.19 -1.1 11,896 - HMPREF1078_RS10560 0.24 -1.0 11,898 - HMPREF1078_RS10560 0.24 -1.1 11,937 + HMPREF1078_RS10560 0.29 -2.6 11,937 + HMPREF1078_RS10560 0.29 -1.4 11,938 - HMPREF1078_RS10560 0.29 +2.6 11,938 - HMPREF1078_RS10560 0.29 +0.3 11,945 + HMPREF1078_RS10560 0.30 +0.3 11,945 + HMPREF1078_RS10560 0.30 -1.2 11,946 - HMPREF1078_RS10560 0.30 +0.7 12,000 + HMPREF1078_RS10560 0.37 -0.4 12,003 + HMPREF1078_RS10560 0.37 +0.1 12,003 + HMPREF1078_RS10560 0.37 -0.6 12,008 - HMPREF1078_RS10560 0.38 +0.3 12,035 + HMPREF1078_RS10560 0.41 -0.6 12,036 - HMPREF1078_RS10560 0.41 +5.2 12,060 + HMPREF1078_RS10560 0.44 -1.5 12,061 - HMPREF1078_RS10560 0.44 -2.4 12,219 + HMPREF1078_RS10560 0.64 +1.1 12,273 - HMPREF1078_RS10560 0.71 -3.1 12,300 + HMPREF1078_RS10560 0.74 -1.9 12,360 + HMPREF1078_RS10560 0.82 -1.3 12,361 - HMPREF1078_RS10560 0.82 -2.2 12,362 + HMPREF1078_RS10560 0.82 -0.7 12,460 + +0.3 12,460 + -0.7 12,460 + -1.6 12,492 + -1.1 12,523 - -1.6 12,555 + -2.9 12,589 - +0.2 12,655 + -0.6 12,655 + -1.9 12,692 + +1.4 12,730 + -2.2 12,731 - -2.1 12,731 - -2.6 12,731 - -2.6 12,745 + HMPREF1078_RS10565 0.13 -0.8 12,823 + HMPREF1078_RS10565 0.31 -1.1 12,823 + HMPREF1078_RS10565 0.31 -0.7 12,823 + HMPREF1078_RS10565 0.31 +0.5 12,824 - HMPREF1078_RS10565 0.31 -2.5 12,847 + HMPREF1078_RS10565 0.36 -2.1 12,847 + HMPREF1078_RS10565 0.36 +0.7 12,848 - HMPREF1078_RS10565 0.36 -1.5 12,848 - HMPREF1078_RS10565 0.36 -2.4 12,867 + HMPREF1078_RS10565 0.41 -0.2 12,867 + HMPREF1078_RS10565 0.41 -0.5 12,868 - HMPREF1078_RS10565 0.41 -2.5 12,868 - HMPREF1078_RS10565 0.41 -2.4 12,868 - HMPREF1078_RS10565 0.41 -1.8 12,871 + HMPREF1078_RS10565 0.41 -0.7 12,871 + HMPREF1078_RS10565 0.41 +2.3 12,872 - HMPREF1078_RS10565 0.42 -3.2 12,872 - HMPREF1078_RS10565 0.42 -3.4 12,872 - HMPREF1078_RS10565 0.42 -2.7 12,899 + HMPREF1078_RS10565 0.48 +0.2 12,899 + HMPREF1078_RS10565 0.48 -0.7 12,899 + HMPREF1078_RS10565 0.48 -0.3 12,900 - HMPREF1078_RS10565 0.48 -3.4 12,900 - HMPREF1078_RS10565 0.48 -0.5 13,014 - HMPREF1078_RS10565 0.74 -3.2 13,133 + +0.4 13,134 - -1.8 13,134 - -2.9 13,134 - -2.9 13,134 - -3.9 13,134 - -2.8 13,136 - -2.9 13,136 - -0.8 13,137 + -0.8 13,138 - -1.2 13,138 - -0.9 13,140 - -2.7 13,144 + -0.1 13,144 + -0.2 13,144 + -0.7 13,171 + +0.7 13,184 + -0.0 13,199 - -3.3 13,257 + -2.2 13,258 - -2.6 13,261 + -2.3 13,262 - HMPREF1078_RS10570 0.10 -4.5 13,262 - HMPREF1078_RS10570 0.10 -3.5 13,266 - HMPREF1078_RS10570 0.11 -3.7 13,325 + HMPREF1078_RS10570 0.21 -0.2 13,325 + HMPREF1078_RS10570 0.21 -3.9 13,326 - HMPREF1078_RS10570 0.21 -2.6 13,326 - HMPREF1078_RS10570 0.21 -2.7 13,335 + HMPREF1078_RS10570 0.23 -2.1 13,335 + HMPREF1078_RS10570 0.23 -2.2 13,336 - HMPREF1078_RS10570 0.23 -3.7 13,336 - HMPREF1078_RS10570 0.23 -2.6 13,336 - HMPREF1078_RS10570 0.23 -3.9 13,379 - HMPREF1078_RS10570 0.30 -3.2 13,433 + HMPREF1078_RS10570 0.40 -2.5 13,434 + HMPREF1078_RS10570 0.40 -2.5 13,434 + HMPREF1078_RS10570 0.40 -0.6 13,434 + HMPREF1078_RS10570 0.40 -1.5 13,435 - HMPREF1078_RS10570 0.40 -2.4 13,435 - HMPREF1078_RS10570 0.40 -2.8 13,435 - HMPREF1078_RS10570 0.40 -0.9 13,597 + HMPREF1078_RS10570 0.68 -3.3 13,598 - HMPREF1078_RS10570 0.68 -3.1 13,602 + HMPREF1078_RS10570 0.69 -3.8 13,790 - -2.8 13,813 + -0.7 13,821 + -1.5 13,840 + -2.6 13,843 + -1.2 13,883 + -2.1 13,883 + -2.7 13,883 + -4.1 13,883 + -1.8 13,887 + -2.5 13,887 + -2.7 13,917 + -2.8 13,918 - -0.0 13,918 - -2.9 13,942 - -0.3 13,983 + HMPREF1078_RS10575 0.13 -2.9 13,983 + HMPREF1078_RS10575 0.13 -3.1 13,985 + HMPREF1078_RS10575 0.13 -4.7 13,985 + HMPREF1078_RS10575 0.13 -0.6 14,000 + HMPREF1078_RS10575 0.14 -3.5 14,001 - HMPREF1078_RS10575 0.14 -3.8 14,001 - HMPREF1078_RS10575 0.14 -2.4 14,005 - HMPREF1078_RS10575 0.15 -2.4 14,005 - HMPREF1078_RS10575 0.15 -3.6 14,021 - HMPREF1078_RS10575 0.16 -4.4 14,052 + HMPREF1078_RS10575 0.19 -3.5 14,054 + HMPREF1078_RS10575 0.19 -2.6 14,071 + HMPREF1078_RS10575 0.20 -3.3 14,084 + HMPREF1078_RS10575 0.21 -1.9 14,085 - HMPREF1078_RS10575 0.21 -2.1 14,085 - HMPREF1078_RS10575 0.21 -2.4 14,115 - HMPREF1078_RS10575 0.24 -1.0 14,115 - HMPREF1078_RS10575 0.24 -0.6
Or see this region's nucleotide sequence