Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10095 and HMPREF1078_RS10100 are separated by 20 nucleotides HMPREF1078_RS10100 and HMPREF1078_RS10105 are separated by 75 nucleotides
HMPREF1078_RS10095: HMPREF1078_RS10095 - ABC transporter permease, at 643,367 to 644,548
_RS10095
HMPREF1078_RS10100: HMPREF1078_RS10100 - efflux RND transporter periplasmic adaptor subunit, at 644,569 to 645,576
_RS10100
HMPREF1078_RS10105: HMPREF1078_RS10105 - TolC family protein, at 645,652 to 647,061
_RS10105
Position (kb) 644
645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 643.620 kb on - strand, within HMPREF1078_RS10095 at 643.757 kb on - strand, within HMPREF1078_RS10095 at 643.764 kb on + strand, within HMPREF1078_RS10095 at 643.798 kb on + strand, within HMPREF1078_RS10095 at 643.798 kb on + strand, within HMPREF1078_RS10095 at 643.820 kb on + strand, within HMPREF1078_RS10095 at 643.820 kb on + strand, within HMPREF1078_RS10095 at 643.820 kb on + strand, within HMPREF1078_RS10095 at 643.891 kb on + strand, within HMPREF1078_RS10095 at 643.892 kb on - strand, within HMPREF1078_RS10095 at 643.964 kb on - strand, within HMPREF1078_RS10095 at 643.971 kb on + strand, within HMPREF1078_RS10095 at 643.984 kb on + strand, within HMPREF1078_RS10095 at 643.985 kb on - strand, within HMPREF1078_RS10095 at 643.985 kb on - strand, within HMPREF1078_RS10095 at 644.057 kb on - strand, within HMPREF1078_RS10095 at 644.058 kb on + strand, within HMPREF1078_RS10095 at 644.058 kb on + strand, within HMPREF1078_RS10095 at 644.058 kb on + strand, within HMPREF1078_RS10095 at 644.059 kb on - strand, within HMPREF1078_RS10095 at 644.059 kb on - strand, within HMPREF1078_RS10095 at 644.149 kb on + strand, within HMPREF1078_RS10095 at 644.154 kb on + strand, within HMPREF1078_RS10095 at 644.154 kb on + strand, within HMPREF1078_RS10095 at 644.155 kb on - strand, within HMPREF1078_RS10095 at 644.155 kb on - strand, within HMPREF1078_RS10095 at 644.155 kb on - strand, within HMPREF1078_RS10095 at 644.155 kb on - strand, within HMPREF1078_RS10095 at 644.159 kb on - strand, within HMPREF1078_RS10095 at 644.159 kb on - strand, within HMPREF1078_RS10095 at 644.167 kb on + strand, within HMPREF1078_RS10095 at 644.167 kb on + strand, within HMPREF1078_RS10095 at 644.169 kb on + strand, within HMPREF1078_RS10095 at 644.182 kb on + strand, within HMPREF1078_RS10095 at 644.182 kb on + strand, within HMPREF1078_RS10095 at 644.183 kb on - strand, within HMPREF1078_RS10095 at 644.183 kb on - strand, within HMPREF1078_RS10095 at 644.237 kb on - strand, within HMPREF1078_RS10095 at 644.336 kb on + strand, within HMPREF1078_RS10095 at 644.342 kb on - strand, within HMPREF1078_RS10095 at 644.369 kb on + strand, within HMPREF1078_RS10095 at 644.369 kb on + strand, within HMPREF1078_RS10095 at 644.370 kb on - strand, within HMPREF1078_RS10095 at 644.386 kb on + strand, within HMPREF1078_RS10095 at 644.387 kb on - strand, within HMPREF1078_RS10095 at 644.455 kb on + strand at 644.455 kb on + strand at 644.455 kb on + strand at 644.456 kb on - strand at 644.456 kb on - strand at 644.466 kb on + strand at 644.492 kb on + strand at 644.527 kb on + strand at 644.532 kb on - strand at 644.564 kb on - strand at 644.564 kb on - strand at 644.567 kb on + strand at 644.568 kb on - strand at 644.574 kb on + strand at 644.574 kb on + strand at 644.574 kb on + strand at 644.614 kb on + strand at 644.614 kb on + strand at 644.615 kb on - strand at 644.706 kb on - strand, within HMPREF1078_RS10100 at 644.724 kb on + strand, within HMPREF1078_RS10100 at 644.724 kb on + strand, within HMPREF1078_RS10100 at 644.724 kb on + strand, within HMPREF1078_RS10100 at 644.724 kb on + strand, within HMPREF1078_RS10100 at 644.726 kb on + strand, within HMPREF1078_RS10100 at 644.726 kb on + strand, within HMPREF1078_RS10100 at 644.727 kb on - strand, within HMPREF1078_RS10100 at 644.727 kb on - strand, within HMPREF1078_RS10100 at 644.727 kb on - strand, within HMPREF1078_RS10100 at 644.727 kb on - strand, within HMPREF1078_RS10100 at 644.841 kb on + strand, within HMPREF1078_RS10100 at 645.021 kb on + strand, within HMPREF1078_RS10100 at 645.022 kb on - strand, within HMPREF1078_RS10100 at 645.043 kb on + strand, within HMPREF1078_RS10100 at 645.043 kb on + strand, within HMPREF1078_RS10100 at 645.051 kb on + strand, within HMPREF1078_RS10100 at 645.052 kb on - strand, within HMPREF1078_RS10100 at 645.052 kb on - strand, within HMPREF1078_RS10100 at 645.056 kb on + strand, within HMPREF1078_RS10100 at 645.057 kb on - strand, within HMPREF1078_RS10100 at 645.099 kb on - strand, within HMPREF1078_RS10100 at 645.168 kb on + strand, within HMPREF1078_RS10100 at 645.168 kb on + strand, within HMPREF1078_RS10100 at 645.169 kb on - strand, within HMPREF1078_RS10100 at 645.169 kb on - strand, within HMPREF1078_RS10100 at 645.171 kb on - strand, within HMPREF1078_RS10100 at 645.171 kb on - strand, within HMPREF1078_RS10100 at 645.221 kb on + strand, within HMPREF1078_RS10100 at 645.232 kb on + strand, within HMPREF1078_RS10100 at 645.233 kb on - strand, within HMPREF1078_RS10100 at 645.255 kb on + strand, within HMPREF1078_RS10100 at 645.256 kb on - strand, within HMPREF1078_RS10100 at 645.256 kb on - strand, within HMPREF1078_RS10100 at 645.292 kb on + strand, within HMPREF1078_RS10100 at 645.293 kb on - strand, within HMPREF1078_RS10100 at 645.293 kb on - strand, within HMPREF1078_RS10100 at 645.389 kb on + strand, within HMPREF1078_RS10100 at 645.389 kb on + strand, within HMPREF1078_RS10100 at 645.390 kb on - strand, within HMPREF1078_RS10100 at 645.423 kb on + strand, within HMPREF1078_RS10100 at 645.459 kb on + strand, within HMPREF1078_RS10100 at 645.460 kb on - strand, within HMPREF1078_RS10100 at 645.460 kb on - strand, within HMPREF1078_RS10100 at 645.460 kb on - strand, within HMPREF1078_RS10100 at 645.460 kb on - strand, within HMPREF1078_RS10100 at 645.460 kb on - strand, within HMPREF1078_RS10100 at 645.502 kb on + strand at 645.502 kb on + strand at 645.517 kb on + strand at 645.517 kb on + strand at 645.518 kb on - strand at 645.518 kb on - strand at 645.529 kb on - strand at 645.543 kb on + strand at 645.543 kb on + strand at 645.543 kb on + strand at 645.543 kb on + strand at 645.543 kb on + strand at 645.543 kb on + strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.544 kb on - strand at 645.546 kb on + strand at 645.558 kb on - strand at 645.582 kb on + strand at 645.583 kb on - strand at 645.584 kb on + strand at 645.585 kb on - strand at 645.597 kb on - strand at 645.604 kb on + strand at 645.605 kb on - strand at 645.611 kb on + strand at 645.612 kb on - strand at 645.615 kb on + strand at 645.615 kb on + strand at 645.615 kb on + strand at 645.616 kb on - strand at 645.616 kb on - strand at 645.616 kb on - strand at 645.630 kb on + strand at 645.630 kb on + strand at 645.631 kb on - strand at 645.654 kb on - strand at 645.740 kb on - strand at 645.752 kb on - strand at 645.752 kb on - strand at 645.814 kb on + strand, within HMPREF1078_RS10105 at 645.917 kb on + strand, within HMPREF1078_RS10105 at 645.918 kb on - strand, within HMPREF1078_RS10105 at 645.964 kb on + strand, within HMPREF1078_RS10105 at 645.964 kb on + strand, within HMPREF1078_RS10105 at 645.965 kb on - strand, within HMPREF1078_RS10105 at 646.011 kb on + strand, within HMPREF1078_RS10105 at 646.011 kb on + strand, within HMPREF1078_RS10105 at 646.012 kb on - strand, within HMPREF1078_RS10105 at 646.012 kb on - strand, within HMPREF1078_RS10105 at 646.013 kb on + strand, within HMPREF1078_RS10105 at 646.014 kb on - strand, within HMPREF1078_RS10105 at 646.014 kb on - strand, within HMPREF1078_RS10105 at 646.014 kb on - strand, within HMPREF1078_RS10105 at 646.054 kb on + strand, within HMPREF1078_RS10105 at 646.054 kb on + strand, within HMPREF1078_RS10105 at 646.055 kb on - strand, within HMPREF1078_RS10105 at 646.124 kb on + strand, within HMPREF1078_RS10105 at 646.124 kb on + strand, within HMPREF1078_RS10105 at 646.125 kb on - strand, within HMPREF1078_RS10105 at 646.125 kb on - strand, within HMPREF1078_RS10105 at 646.134 kb on + strand, within HMPREF1078_RS10105 at 646.135 kb on - strand, within HMPREF1078_RS10105 at 646.188 kb on - strand, within HMPREF1078_RS10105 at 646.188 kb on - strand, within HMPREF1078_RS10105 at 646.188 kb on - strand, within HMPREF1078_RS10105 at 646.188 kb on - strand, within HMPREF1078_RS10105 at 646.225 kb on - strand, within HMPREF1078_RS10105 at 646.233 kb on + strand, within HMPREF1078_RS10105 at 646.233 kb on + strand, within HMPREF1078_RS10105 at 646.322 kb on - strand, within HMPREF1078_RS10105 at 646.336 kb on + strand, within HMPREF1078_RS10105 at 646.337 kb on - strand, within HMPREF1078_RS10105 at 646.337 kb on - strand, within HMPREF1078_RS10105 at 646.348 kb on + strand, within HMPREF1078_RS10105 at 646.349 kb on - strand, within HMPREF1078_RS10105 at 646.349 kb on - strand, within HMPREF1078_RS10105 at 646.473 kb on + strand, within HMPREF1078_RS10105 at 646.473 kb on + strand, within HMPREF1078_RS10105 at 646.474 kb on - strand, within HMPREF1078_RS10105 at 646.505 kb on + strand, within HMPREF1078_RS10105 at 646.505 kb on + strand, within HMPREF1078_RS10105 at 646.505 kb on + strand, within HMPREF1078_RS10105 at 646.505 kb on + strand, within HMPREF1078_RS10105 at 646.505 kb on + strand, within HMPREF1078_RS10105 at 646.506 kb on - strand, within HMPREF1078_RS10105 at 646.506 kb on - strand, within HMPREF1078_RS10105 at 646.506 kb on - strand, within HMPREF1078_RS10105 at 646.528 kb on - strand, within HMPREF1078_RS10105 at 646.531 kb on + strand, within HMPREF1078_RS10105 at 646.532 kb on - strand, within HMPREF1078_RS10105 at 646.532 kb on - strand, within HMPREF1078_RS10105 at 646.535 kb on - strand, within HMPREF1078_RS10105 at 646.553 kb on + strand, within HMPREF1078_RS10105 at 646.554 kb on - strand, within HMPREF1078_RS10105 at 646.554 kb on - strand, within HMPREF1078_RS10105
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 643,620 - HMPREF1078_RS10095 0.21 +0.6 643,757 - HMPREF1078_RS10095 0.33 -3.1 643,764 + HMPREF1078_RS10095 0.34 -3.4 643,798 + HMPREF1078_RS10095 0.36 -2.4 643,798 + HMPREF1078_RS10095 0.36 -1.9 643,820 + HMPREF1078_RS10095 0.38 -2.8 643,820 + HMPREF1078_RS10095 0.38 -1.7 643,820 + HMPREF1078_RS10095 0.38 -1.9 643,891 + HMPREF1078_RS10095 0.44 +1.7 643,892 - HMPREF1078_RS10095 0.44 -0.0 643,964 - HMPREF1078_RS10095 0.51 +2.3 643,971 + HMPREF1078_RS10095 0.51 -0.4 643,984 + HMPREF1078_RS10095 0.52 +0.6 643,985 - HMPREF1078_RS10095 0.52 -2.0 643,985 - HMPREF1078_RS10095 0.52 -2.1 644,057 - HMPREF1078_RS10095 0.58 -2.2 644,058 + HMPREF1078_RS10095 0.58 -1.5 644,058 + HMPREF1078_RS10095 0.58 -1.1 644,058 + HMPREF1078_RS10095 0.58 -0.2 644,059 - HMPREF1078_RS10095 0.59 -3.1 644,059 - HMPREF1078_RS10095 0.59 -1.8 644,149 + HMPREF1078_RS10095 0.66 -2.4 644,154 + HMPREF1078_RS10095 0.67 -3.4 644,154 + HMPREF1078_RS10095 0.67 +0.1 644,155 - HMPREF1078_RS10095 0.67 -1.1 644,155 - HMPREF1078_RS10095 0.67 -0.8 644,155 - HMPREF1078_RS10095 0.67 -3.7 644,155 - HMPREF1078_RS10095 0.67 -1.2 644,159 - HMPREF1078_RS10095 0.67 -1.3 644,159 - HMPREF1078_RS10095 0.67 -2.7 644,167 + HMPREF1078_RS10095 0.68 -1.1 644,167 + HMPREF1078_RS10095 0.68 -1.4 644,169 + HMPREF1078_RS10095 0.68 -3.2 644,182 + HMPREF1078_RS10095 0.69 -0.7 644,182 + HMPREF1078_RS10095 0.69 -0.4 644,183 - HMPREF1078_RS10095 0.69 +0.9 644,183 - HMPREF1078_RS10095 0.69 +0.8 644,237 - HMPREF1078_RS10095 0.74 -2.4 644,336 + HMPREF1078_RS10095 0.82 -2.5 644,342 - HMPREF1078_RS10095 0.82 -2.7 644,369 + HMPREF1078_RS10095 0.85 -2.2 644,369 + HMPREF1078_RS10095 0.85 -3.2 644,370 - HMPREF1078_RS10095 0.85 -0.6 644,386 + HMPREF1078_RS10095 0.86 -0.8 644,387 - HMPREF1078_RS10095 0.86 -3.5 644,455 + -3.0 644,455 + -2.1 644,455 + -1.1 644,456 - -1.8 644,456 - +0.3 644,466 + -1.7 644,492 + -2.5 644,527 + -0.8 644,532 - -1.8 644,564 - -1.0 644,564 - +0.1 644,567 + -0.4 644,568 - +0.0 644,574 + -2.0 644,574 + -1.1 644,574 + -3.9 644,614 + -0.7 644,614 + -1.3 644,615 - -2.5 644,706 - HMPREF1078_RS10100 0.14 -1.4 644,724 + HMPREF1078_RS10100 0.15 -2.5 644,724 + HMPREF1078_RS10100 0.15 -2.5 644,724 + HMPREF1078_RS10100 0.15 -1.1 644,724 + HMPREF1078_RS10100 0.15 -1.5 644,726 + HMPREF1078_RS10100 0.16 -2.2 644,726 + HMPREF1078_RS10100 0.16 -3.2 644,727 - HMPREF1078_RS10100 0.16 -2.7 644,727 - HMPREF1078_RS10100 0.16 -1.8 644,727 - HMPREF1078_RS10100 0.16 +0.1 644,727 - HMPREF1078_RS10100 0.16 -2.5 644,841 + HMPREF1078_RS10100 0.27 -2.4 645,021 + HMPREF1078_RS10100 0.45 +0.9 645,022 - HMPREF1078_RS10100 0.45 -1.1 645,043 + HMPREF1078_RS10100 0.47 -1.4 645,043 + HMPREF1078_RS10100 0.47 -1.4 645,051 + HMPREF1078_RS10100 0.48 -1.8 645,052 - HMPREF1078_RS10100 0.48 -1.6 645,052 - HMPREF1078_RS10100 0.48 -0.1 645,056 + HMPREF1078_RS10100 0.48 -0.1 645,057 - HMPREF1078_RS10100 0.48 -2.3 645,099 - HMPREF1078_RS10100 0.53 -1.0 645,168 + HMPREF1078_RS10100 0.59 +0.7 645,168 + HMPREF1078_RS10100 0.59 -3.9 645,169 - HMPREF1078_RS10100 0.60 -2.7 645,169 - HMPREF1078_RS10100 0.60 -1.0 645,171 - HMPREF1078_RS10100 0.60 -1.2 645,171 - HMPREF1078_RS10100 0.60 -0.6 645,221 + HMPREF1078_RS10100 0.65 -0.6 645,232 + HMPREF1078_RS10100 0.66 -2.8 645,233 - HMPREF1078_RS10100 0.66 -1.2 645,255 + HMPREF1078_RS10100 0.68 -4.0 645,256 - HMPREF1078_RS10100 0.68 -0.9 645,256 - HMPREF1078_RS10100 0.68 -2.2 645,292 + HMPREF1078_RS10100 0.72 -2.2 645,293 - HMPREF1078_RS10100 0.72 -3.7 645,293 - HMPREF1078_RS10100 0.72 -2.8 645,389 + HMPREF1078_RS10100 0.81 -2.7 645,389 + HMPREF1078_RS10100 0.81 -3.2 645,390 - HMPREF1078_RS10100 0.81 -0.7 645,423 + HMPREF1078_RS10100 0.85 -2.5 645,459 + HMPREF1078_RS10100 0.88 -0.8 645,460 - HMPREF1078_RS10100 0.88 -1.8 645,460 - HMPREF1078_RS10100 0.88 -1.7 645,460 - HMPREF1078_RS10100 0.88 -2.2 645,460 - HMPREF1078_RS10100 0.88 +0.9 645,460 - HMPREF1078_RS10100 0.88 -1.5 645,502 + -0.7 645,502 + +0.3 645,517 + -1.4 645,517 + -0.3 645,518 - -1.7 645,518 - -2.4 645,529 - -3.4 645,543 + -1.1 645,543 + -2.1 645,543 + -1.6 645,543 + -1.2 645,543 + -2.1 645,543 + -2.2 645,544 - -1.1 645,544 - -1.5 645,544 - -3.3 645,544 - -0.7 645,544 - -3.0 645,544 - -1.6 645,544 - -2.6 645,544 - -2.0 645,544 - -1.4 645,546 + -1.8 645,558 - +0.9 645,582 + -2.7 645,583 - -2.1 645,584 + -0.6 645,585 - -1.4 645,597 - +0.9 645,604 + -1.3 645,605 - +0.4 645,611 + +1.4 645,612 - +1.3 645,615 + -1.5 645,615 + -3.4 645,615 + -2.8 645,616 - +0.3 645,616 - -0.0 645,616 - -0.8 645,630 + -0.1 645,630 + -2.2 645,631 - +1.5 645,654 - +1.2 645,740 - -0.9 645,752 - -1.9 645,752 - -3.0 645,814 + HMPREF1078_RS10105 0.11 -0.4 645,917 + HMPREF1078_RS10105 0.19 -1.3 645,918 - HMPREF1078_RS10105 0.19 -1.0 645,964 + HMPREF1078_RS10105 0.22 +0.6 645,964 + HMPREF1078_RS10105 0.22 -1.4 645,965 - HMPREF1078_RS10105 0.22 -1.5 646,011 + HMPREF1078_RS10105 0.25 -1.8 646,011 + HMPREF1078_RS10105 0.25 -1.9 646,012 - HMPREF1078_RS10105 0.26 -0.2 646,012 - HMPREF1078_RS10105 0.26 -0.4 646,013 + HMPREF1078_RS10105 0.26 +0.7 646,014 - HMPREF1078_RS10105 0.26 -2.0 646,014 - HMPREF1078_RS10105 0.26 -2.5 646,014 - HMPREF1078_RS10105 0.26 -3.7 646,054 + HMPREF1078_RS10105 0.29 -3.3 646,054 + HMPREF1078_RS10105 0.29 -3.4 646,055 - HMPREF1078_RS10105 0.29 -2.4 646,124 + HMPREF1078_RS10105 0.33 -2.0 646,124 + HMPREF1078_RS10105 0.33 -1.8 646,125 - HMPREF1078_RS10105 0.34 -1.3 646,125 - HMPREF1078_RS10105 0.34 -3.2 646,134 + HMPREF1078_RS10105 0.34 -2.5 646,135 - HMPREF1078_RS10105 0.34 -4.6 646,188 - HMPREF1078_RS10105 0.38 -0.6 646,188 - HMPREF1078_RS10105 0.38 -1.1 646,188 - HMPREF1078_RS10105 0.38 -1.9 646,188 - HMPREF1078_RS10105 0.38 -0.4 646,225 - HMPREF1078_RS10105 0.41 -1.1 646,233 + HMPREF1078_RS10105 0.41 -0.8 646,233 + HMPREF1078_RS10105 0.41 -2.6 646,322 - HMPREF1078_RS10105 0.48 -3.1 646,336 + HMPREF1078_RS10105 0.49 -2.4 646,337 - HMPREF1078_RS10105 0.49 -1.2 646,337 - HMPREF1078_RS10105 0.49 -2.6 646,348 + HMPREF1078_RS10105 0.49 +0.1 646,349 - HMPREF1078_RS10105 0.49 -0.6 646,349 - HMPREF1078_RS10105 0.49 +0.4 646,473 + HMPREF1078_RS10105 0.58 -2.0 646,473 + HMPREF1078_RS10105 0.58 -3.8 646,474 - HMPREF1078_RS10105 0.58 -2.2 646,505 + HMPREF1078_RS10105 0.60 -2.1 646,505 + HMPREF1078_RS10105 0.60 -0.8 646,505 + HMPREF1078_RS10105 0.60 -1.5 646,505 + HMPREF1078_RS10105 0.60 -2.3 646,505 + HMPREF1078_RS10105 0.60 -1.8 646,506 - HMPREF1078_RS10105 0.61 -0.4 646,506 - HMPREF1078_RS10105 0.61 -1.4 646,506 - HMPREF1078_RS10105 0.61 -3.3 646,528 - HMPREF1078_RS10105 0.62 +2.5 646,531 + HMPREF1078_RS10105 0.62 -3.2 646,532 - HMPREF1078_RS10105 0.62 -3.2 646,532 - HMPREF1078_RS10105 0.62 -3.4 646,535 - HMPREF1078_RS10105 0.63 -0.7 646,553 + HMPREF1078_RS10105 0.64 -2.5 646,554 - HMPREF1078_RS10105 0.64 -3.6 646,554 - HMPREF1078_RS10105 0.64 -4.0
Or see this region's nucleotide sequence