Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09070 and HMPREF1078_RS09075 are separated by 7 nucleotides HMPREF1078_RS09075 and HMPREF1078_RS09080 overlap by 4 nucleotides HMPREF1078_RS09080 and HMPREF1078_RS09085 overlap by 4 nucleotides HMPREF1078_RS09085 and HMPREF1078_RS19210 are separated by 208 nucleotides
HMPREF1078_RS09070: HMPREF1078_RS09070 - conjugal transfer protein TraO, at 414,332 to 414,907
_RS09070
HMPREF1078_RS09075: HMPREF1078_RS09075 - toprim domain-containing protein, at 414,915 to 415,817
_RS09075
HMPREF1078_RS09080: HMPREF1078_RS09080 - DUF3872 domain-containing protein, at 415,814 to 416,317
_RS09080
HMPREF1078_RS09085: HMPREF1078_RS09085 - hypothetical protein, at 416,314 to 416,841
_RS09085
HMPREF1078_RS19210: HMPREF1078_RS19210 - hypothetical protein, at 417,050 to 417,295
_RS19210
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.084 kb on - strand, within HMPREF1078_RS09075 at 415.221 kb on + strand, within HMPREF1078_RS09075 at 415.296 kb on + strand, within HMPREF1078_RS09075 at 415.297 kb on - strand, within HMPREF1078_RS09075 at 415.447 kb on + strand, within HMPREF1078_RS09075 at 415.448 kb on - strand, within HMPREF1078_RS09075 at 415.553 kb on - strand, within HMPREF1078_RS09075 at 415.553 kb on - strand, within HMPREF1078_RS09075 at 415.688 kb on + strand, within HMPREF1078_RS09075 at 415.689 kb on - strand, within HMPREF1078_RS09075 at 415.759 kb on - strand at 415.799 kb on - strand at 415.821 kb on + strand at 415.822 kb on - strand at 415.822 kb on - strand at 415.938 kb on - strand, within HMPREF1078_RS09080 at 416.057 kb on + strand, within HMPREF1078_RS09080 at 416.157 kb on - strand, within HMPREF1078_RS09080 at 416.215 kb on + strand, within HMPREF1078_RS09080 at 416.225 kb on + strand, within HMPREF1078_RS09080 at 416.226 kb on - strand, within HMPREF1078_RS09080 at 416.324 kb on + strand at 416.494 kb on + strand, within HMPREF1078_RS09085 at 416.653 kb on + strand, within HMPREF1078_RS09085 at 416.708 kb on + strand, within HMPREF1078_RS09085 at 416.708 kb on + strand, within HMPREF1078_RS09085 at 416.744 kb on - strand, within HMPREF1078_RS09085 at 416.752 kb on + strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.753 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.755 kb on - strand, within HMPREF1078_RS09085 at 416.756 kb on + strand, within HMPREF1078_RS09085 at 416.757 kb on - strand, within HMPREF1078_RS09085 at 416.757 kb on - strand, within HMPREF1078_RS09085 at 416.831 kb on - strand at 416.831 kb on - strand at 416.831 kb on - strand at 416.833 kb on - strand at 416.833 kb on - strand at 416.874 kb on + strand at 416.879 kb on - strand at 416.910 kb on + strand at 416.911 kb on - strand at 416.921 kb on - strand at 416.991 kb on + strand at 416.992 kb on - strand at 417.022 kb on + strand at 417.022 kb on + strand at 417.023 kb on - strand at 417.023 kb on - strand at 417.103 kb on + strand, within HMPREF1078_RS19210 at 417.103 kb on + strand, within HMPREF1078_RS19210 at 417.104 kb on - strand, within HMPREF1078_RS19210 at 417.104 kb on - strand, within HMPREF1078_RS19210 at 417.145 kb on - strand, within HMPREF1078_RS19210 at 417.197 kb on + strand, within HMPREF1078_RS19210 at 417.198 kb on - strand, within HMPREF1078_RS19210 at 417.199 kb on + strand, within HMPREF1078_RS19210 at 417.199 kb on + strand, within HMPREF1078_RS19210 at 417.200 kb on - strand, within HMPREF1078_RS19210 at 417.202 kb on - strand, within HMPREF1078_RS19210 at 417.202 kb on - strand, within HMPREF1078_RS19210 at 417.218 kb on - strand, within HMPREF1078_RS19210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 415,084 - HMPREF1078_RS09075 0.19 -0.2 415,221 + HMPREF1078_RS09075 0.34 -1.6 415,296 + HMPREF1078_RS09075 0.42 -2.1 415,297 - HMPREF1078_RS09075 0.42 -1.6 415,447 + HMPREF1078_RS09075 0.59 +0.1 415,448 - HMPREF1078_RS09075 0.59 -0.4 415,553 - HMPREF1078_RS09075 0.71 +0.5 415,553 - HMPREF1078_RS09075 0.71 -0.7 415,688 + HMPREF1078_RS09075 0.86 -2.0 415,689 - HMPREF1078_RS09075 0.86 +0.7 415,759 - +1.4 415,799 - +1.6 415,821 + -0.1 415,822 - -1.5 415,822 - +0.2 415,938 - HMPREF1078_RS09080 0.25 +1.1 416,057 + HMPREF1078_RS09080 0.48 +0.1 416,157 - HMPREF1078_RS09080 0.68 -1.0 416,215 + HMPREF1078_RS09080 0.80 -0.4 416,225 + HMPREF1078_RS09080 0.82 -0.9 416,226 - HMPREF1078_RS09080 0.82 -1.2 416,324 + +0.6 416,494 + HMPREF1078_RS09085 0.34 -0.1 416,653 + HMPREF1078_RS09085 0.64 -1.9 416,708 + HMPREF1078_RS09085 0.75 -0.3 416,708 + HMPREF1078_RS09085 0.75 +0.8 416,744 - HMPREF1078_RS09085 0.81 +0.1 416,752 + HMPREF1078_RS09085 0.83 -0.4 416,753 - HMPREF1078_RS09085 0.83 -0.8 416,753 - HMPREF1078_RS09085 0.83 +1.1 416,753 - HMPREF1078_RS09085 0.83 -1.0 416,755 - HMPREF1078_RS09085 0.84 +0.2 416,755 - HMPREF1078_RS09085 0.84 -1.9 416,755 - HMPREF1078_RS09085 0.84 -0.4 416,756 + HMPREF1078_RS09085 0.84 -0.8 416,757 - HMPREF1078_RS09085 0.84 +0.5 416,757 - HMPREF1078_RS09085 0.84 +1.6 416,831 - +1.6 416,831 - +0.1 416,831 - +0.8 416,833 - -0.0 416,833 - +0.8 416,874 + +0.0 416,879 - -0.2 416,910 + -0.1 416,911 - +0.1 416,921 - +0.7 416,991 + +0.5 416,992 - -1.5 417,022 + +0.1 417,022 + +1.1 417,023 - +1.0 417,023 - -1.4 417,103 + HMPREF1078_RS19210 0.22 +0.6 417,103 + HMPREF1078_RS19210 0.22 -0.7 417,104 - HMPREF1078_RS19210 0.22 -0.7 417,104 - HMPREF1078_RS19210 0.22 -0.3 417,145 - HMPREF1078_RS19210 0.39 +0.0 417,197 + HMPREF1078_RS19210 0.60 -0.8 417,198 - HMPREF1078_RS19210 0.60 -1.5 417,199 + HMPREF1078_RS19210 0.61 -0.3 417,199 + HMPREF1078_RS19210 0.61 -0.1 417,200 - HMPREF1078_RS19210 0.61 +0.7 417,202 - HMPREF1078_RS19210 0.62 +2.2 417,202 - HMPREF1078_RS19210 0.62 -0.9 417,218 - HMPREF1078_RS19210 0.68 +1.9
Or see this region's nucleotide sequence