Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07890 and HMPREF1078_RS07895 are separated by 472 nucleotides HMPREF1078_RS07895 and HMPREF1078_RS07900 are separated by 42 nucleotides HMPREF1078_RS07900 and HMPREF1078_RS07905 are separated by 232 nucleotides
HMPREF1078_RS07890: HMPREF1078_RS07890 - ABC-F family ATP-binding cassette domain-containing protein, at 134,361 to 135,977
_RS07890
HMPREF1078_RS07895: HMPREF1078_RS07895 - molecular chaperone DnaJ, at 136,450 to 137,607
_RS07895
HMPREF1078_RS07900: HMPREF1078_RS07900 - nucleotide exchange factor GrpE, at 137,650 to 138,252
_RS07900
HMPREF1078_RS07905: HMPREF1078_RS07905 - PDZ domain-containing protein, at 138,485 to 139,903
_RS07905
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 135.774 kb on - strand, within HMPREF1078_RS07890 at 135.774 kb on - strand, within HMPREF1078_RS07890 at 135.775 kb on + strand, within HMPREF1078_RS07890 at 135.775 kb on + strand, within HMPREF1078_RS07890 at 135.775 kb on + strand, within HMPREF1078_RS07890 at 135.775 kb on + strand, within HMPREF1078_RS07890 at 135.776 kb on - strand, within HMPREF1078_RS07890 at 135.776 kb on - strand, within HMPREF1078_RS07890 at 135.776 kb on - strand, within HMPREF1078_RS07890 at 135.778 kb on + strand, within HMPREF1078_RS07890 at 135.778 kb on + strand, within HMPREF1078_RS07890 at 135.779 kb on - strand, within HMPREF1078_RS07890 at 135.798 kb on + strand, within HMPREF1078_RS07890 at 135.836 kb on + strand at 135.903 kb on + strand at 135.913 kb on - strand at 135.913 kb on - strand at 135.949 kb on + strand at 135.949 kb on + strand at 135.950 kb on - strand at 135.950 kb on - strand at 135.954 kb on + strand at 135.955 kb on - strand at 135.963 kb on + strand at 135.963 kb on + strand at 135.964 kb on - strand at 135.970 kb on - strand at 135.970 kb on - strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.977 kb on + strand at 135.978 kb on - strand at 136.097 kb on + strand at 136.097 kb on + strand at 136.098 kb on - strand at 136.098 kb on - strand at 136.114 kb on + strand at 136.119 kb on + strand at 136.119 kb on + strand at 136.120 kb on - strand at 136.120 kb on - strand at 136.121 kb on + strand at 136.121 kb on + strand at 136.122 kb on - strand at 136.122 kb on - strand at 136.123 kb on + strand at 136.123 kb on + strand at 136.123 kb on + strand at 136.123 kb on + strand at 136.124 kb on - strand at 136.158 kb on - strand at 136.163 kb on + strand at 136.165 kb on + strand at 136.166 kb on - strand at 136.198 kb on + strand at 136.199 kb on - strand at 136.199 kb on - strand at 136.208 kb on + strand at 136.208 kb on + strand at 136.208 kb on + strand at 136.221 kb on - strand at 136.270 kb on + strand at 136.271 kb on - strand at 136.289 kb on - strand at 136.292 kb on - strand at 136.330 kb on + strand at 136.330 kb on + strand at 136.331 kb on - strand at 136.331 kb on - strand at 136.361 kb on - strand at 136.361 kb on - strand at 136.381 kb on - strand at 136.428 kb on + strand at 136.461 kb on + strand at 136.461 kb on + strand at 136.461 kb on + strand at 136.462 kb on - strand at 136.462 kb on - strand at 136.462 kb on - strand at 136.542 kb on + strand at 136.542 kb on + strand at 136.542 kb on + strand at 136.543 kb on - strand at 136.576 kb on - strand, within HMPREF1078_RS07895 at 136.585 kb on + strand, within HMPREF1078_RS07895 at 136.586 kb on - strand, within HMPREF1078_RS07895 at 136.591 kb on + strand, within HMPREF1078_RS07895 at 136.654 kb on + strand, within HMPREF1078_RS07895 at 136.692 kb on + strand, within HMPREF1078_RS07895 at 136.699 kb on - strand, within HMPREF1078_RS07895 at 136.699 kb on - strand, within HMPREF1078_RS07895 at 136.756 kb on + strand, within HMPREF1078_RS07895 at 136.766 kb on + strand, within HMPREF1078_RS07895 at 136.789 kb on + strand, within HMPREF1078_RS07895 at 136.789 kb on + strand, within HMPREF1078_RS07895 at 136.843 kb on - strand, within HMPREF1078_RS07895 at 136.984 kb on - strand, within HMPREF1078_RS07895 at 137.038 kb on + strand, within HMPREF1078_RS07895 at 137.039 kb on - strand, within HMPREF1078_RS07895 at 137.046 kb on + strand, within HMPREF1078_RS07895 at 137.046 kb on + strand, within HMPREF1078_RS07895 at 137.210 kb on - strand, within HMPREF1078_RS07895 at 137.210 kb on - strand, within HMPREF1078_RS07895 at 137.343 kb on + strand, within HMPREF1078_RS07895 at 137.344 kb on - strand, within HMPREF1078_RS07895 at 137.344 kb on - strand, within HMPREF1078_RS07895 at 137.344 kb on - strand, within HMPREF1078_RS07895 at 137.411 kb on + strand, within HMPREF1078_RS07895 at 137.411 kb on + strand, within HMPREF1078_RS07895 at 137.447 kb on + strand, within HMPREF1078_RS07895 at 137.447 kb on + strand, within HMPREF1078_RS07895 at 137.554 kb on + strand at 137.588 kb on + strand at 137.589 kb on - strand at 137.589 kb on - strand at 137.592 kb on - strand at 137.602 kb on - strand at 137.614 kb on - strand at 137.627 kb on + strand at 137.627 kb on + strand at 137.648 kb on + strand at 137.648 kb on + strand at 137.648 kb on + strand at 137.649 kb on - strand at 137.821 kb on + strand, within HMPREF1078_RS07900 at 137.890 kb on + strand, within HMPREF1078_RS07900 at 138.072 kb on - strand, within HMPREF1078_RS07900 at 138.261 kb on - strand at 138.305 kb on - strand at 138.319 kb on - strand at 138.319 kb on - strand at 138.422 kb on + strand at 138.437 kb on + strand at 138.442 kb on + strand at 138.460 kb on + strand at 138.484 kb on + strand at 138.553 kb on + strand at 138.575 kb on + strand at 138.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 135,774 - HMPREF1078_RS07890 0.87 +0.2 135,774 - HMPREF1078_RS07890 0.87 -0.3 135,775 + HMPREF1078_RS07890 0.87 -0.4 135,775 + HMPREF1078_RS07890 0.87 +0.2 135,775 + HMPREF1078_RS07890 0.87 +0.8 135,775 + HMPREF1078_RS07890 0.87 -0.5 135,776 - HMPREF1078_RS07890 0.88 -0.8 135,776 - HMPREF1078_RS07890 0.88 -0.6 135,776 - HMPREF1078_RS07890 0.88 -1.1 135,778 + HMPREF1078_RS07890 0.88 -1.5 135,778 + HMPREF1078_RS07890 0.88 -0.7 135,779 - HMPREF1078_RS07890 0.88 -1.4 135,798 + HMPREF1078_RS07890 0.89 +0.5 135,836 + +0.7 135,903 + -1.6 135,913 - +0.2 135,913 - -0.5 135,949 + +0.0 135,949 + +0.3 135,950 - -0.2 135,950 - -0.7 135,954 + -0.9 135,955 - +0.0 135,963 + -1.9 135,963 + +0.4 135,964 - +1.0 135,970 - -0.8 135,970 - +0.2 135,971 + +1.0 135,971 + +0.4 135,971 + +0.7 135,971 + -0.4 135,972 - -0.2 135,972 - -1.3 135,972 - -0.5 135,972 - +0.2 135,972 - +0.1 135,972 - +0.4 135,972 - +1.0 135,972 - +0.4 135,977 + +0.4 135,978 - -0.2 136,097 + +1.2 136,097 + +0.0 136,098 - +0.1 136,098 - +0.9 136,114 + +0.7 136,119 + +0.4 136,119 + +0.7 136,120 - +1.5 136,120 - +0.1 136,121 + +0.8 136,121 + +2.8 136,122 - -0.5 136,122 - +0.5 136,123 + -2.3 136,123 + +0.8 136,123 + -2.8 136,123 + -0.3 136,124 - +0.3 136,158 - -0.4 136,163 + +0.2 136,165 + -0.6 136,166 - -0.5 136,198 + -1.1 136,199 - -1.5 136,199 - +1.0 136,208 + -0.3 136,208 + -3.1 136,208 + -0.2 136,221 - -1.5 136,270 + -0.3 136,271 - -1.4 136,289 - -0.2 136,292 - +0.7 136,330 + +0.4 136,330 + -1.6 136,331 - -0.2 136,331 - -0.3 136,361 - -2.1 136,361 - -1.7 136,381 - +0.6 136,428 + -1.7 136,461 + -0.1 136,461 + -2.3 136,461 + -0.4 136,462 - -0.7 136,462 - +0.5 136,462 - -0.3 136,542 + -0.1 136,542 + -1.0 136,542 + -1.3 136,543 - -2.0 136,576 - HMPREF1078_RS07895 0.11 +0.5 136,585 + HMPREF1078_RS07895 0.12 -3.1 136,586 - HMPREF1078_RS07895 0.12 -1.9 136,591 + HMPREF1078_RS07895 0.12 -1.3 136,654 + HMPREF1078_RS07895 0.18 -0.2 136,692 + HMPREF1078_RS07895 0.21 +0.8 136,699 - HMPREF1078_RS07895 0.22 -1.9 136,699 - HMPREF1078_RS07895 0.22 -1.1 136,756 + HMPREF1078_RS07895 0.26 +0.8 136,766 + HMPREF1078_RS07895 0.27 -1.4 136,789 + HMPREF1078_RS07895 0.29 -0.6 136,789 + HMPREF1078_RS07895 0.29 -0.2 136,843 - HMPREF1078_RS07895 0.34 -1.3 136,984 - HMPREF1078_RS07895 0.46 -0.8 137,038 + HMPREF1078_RS07895 0.51 -1.2 137,039 - HMPREF1078_RS07895 0.51 -1.4 137,046 + HMPREF1078_RS07895 0.51 +0.5 137,046 + HMPREF1078_RS07895 0.51 -1.9 137,210 - HMPREF1078_RS07895 0.66 +0.2 137,210 - HMPREF1078_RS07895 0.66 -1.6 137,343 + HMPREF1078_RS07895 0.77 +0.0 137,344 - HMPREF1078_RS07895 0.77 -0.5 137,344 - HMPREF1078_RS07895 0.77 -0.2 137,344 - HMPREF1078_RS07895 0.77 -0.9 137,411 + HMPREF1078_RS07895 0.83 +1.5 137,411 + HMPREF1078_RS07895 0.83 -1.0 137,447 + HMPREF1078_RS07895 0.86 -1.1 137,447 + HMPREF1078_RS07895 0.86 -1.5 137,554 + +0.2 137,588 + +1.8 137,589 - -2.4 137,589 - -0.8 137,592 - +1.0 137,602 - -2.8 137,614 - -1.9 137,627 + +0.2 137,627 + +0.2 137,648 + +0.5 137,648 + +0.8 137,648 + -0.5 137,649 - -0.9 137,821 + HMPREF1078_RS07900 0.28 +0.8 137,890 + HMPREF1078_RS07900 0.40 +0.8 138,072 - HMPREF1078_RS07900 0.70 +0.8 138,261 - -2.0 138,305 - +2.4 138,319 - -0.8 138,319 - +1.1 138,422 + +0.1 138,437 + +0.4 138,442 + -0.9 138,460 + -0.7 138,484 + +0.0 138,553 + -1.0 138,575 + +1.9 138,576 - +0.8
Or see this region's nucleotide sequence