Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07445

Experiment: D-Maltose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Maltose 10 mg/mL (C)
14,806	+		HMPREF1078_RS07440	0.38	-1.4
14,875	-		HMPREF1078_RS07440	0.44	+0.8
14,899	+		HMPREF1078_RS07440	0.46	+0.5
15,050	+		HMPREF1078_RS07440	0.58	+0.8
15,103	+		HMPREF1078_RS07440	0.62	+1.1
15,109	+		HMPREF1078_RS07440	0.62	-1.3
15,118	+		HMPREF1078_RS07440	0.63	+0.2
15,128	+		HMPREF1078_RS07440	0.64	+0.0
15,128	+		HMPREF1078_RS07440	0.64	-0.2
15,205	+		HMPREF1078_RS07440	0.70	+0.8
15,209	+		HMPREF1078_RS07440	0.70	+0.8
15,287	-		HMPREF1078_RS07440	0.77	+0.2
15,297	-		HMPREF1078_RS07440	0.77	+0.5
15,397	+		HMPREF1078_RS07440	0.85	-0.8
15,438	-		HMPREF1078_RS07440	0.89	-1.5
15,502	+				-1.9
15,502	+				-1.1
15,514	+				+1.2
15,615	+				+0.8
15,615	+				-0.1
15,615	+				-0.9
15,671	-				-0.6
15,676	-				+2.8
15,793	-		HMPREF1078_RS07445	0.11	+0.8
15,860	-		HMPREF1078_RS07445	0.15	-1.4
15,860	-		HMPREF1078_RS07445	0.15	+1.8
15,872	+		HMPREF1078_RS07445	0.15	-0.6
15,885	+		HMPREF1078_RS07445	0.16	-1.1
16,025	-		HMPREF1078_RS07445	0.23	-1.9
16,043	+		HMPREF1078_RS07445	0.24	+2.2
16,192	+		HMPREF1078_RS07445	0.32	+0.0
16,193	-		HMPREF1078_RS07445	0.32	-0.2
16,194	+		HMPREF1078_RS07445	0.32	-0.8
16,194	+		HMPREF1078_RS07445	0.32	-0.6
16,194	+		HMPREF1078_RS07445	0.32	-0.5
16,194	+		HMPREF1078_RS07445	0.32	-1.7
16,195	-		HMPREF1078_RS07445	0.32	-1.2
16,195	-		HMPREF1078_RS07445	0.32	+2.3
16,232	-		HMPREF1078_RS07445	0.34	+2.0
16,232	-		HMPREF1078_RS07445	0.34	+0.8
16,232	-		HMPREF1078_RS07445	0.34	-1.2
16,234	-		HMPREF1078_RS07445	0.34	+1.2
16,240	-		HMPREF1078_RS07445	0.34	-0.5
16,240	-		HMPREF1078_RS07445	0.34	-0.2
16,291	+		HMPREF1078_RS07445	0.37	-0.6
16,291	+		HMPREF1078_RS07445	0.37	-1.0
16,292	-		HMPREF1078_RS07445	0.37	+0.2
16,295	-		HMPREF1078_RS07445	0.37	-1.2
16,346	+		HMPREF1078_RS07445	0.40	-1.4
16,404	+		HMPREF1078_RS07445	0.43	-0.5
16,404	+		HMPREF1078_RS07445	0.43	-1.3
16,405	-		HMPREF1078_RS07445	0.43	-0.5
16,487	+		HMPREF1078_RS07445	0.47	-1.3
16,507	+		HMPREF1078_RS07445	0.48	-0.5
16,507	+		HMPREF1078_RS07445	0.48	-1.0
16,508	-		HMPREF1078_RS07445	0.48	-0.8
16,652	+		HMPREF1078_RS07445	0.56	-1.7
16,721	+		HMPREF1078_RS07445	0.59	-0.6
16,738	-		HMPREF1078_RS07445	0.60	-0.5
16,892	+		HMPREF1078_RS07445	0.68	-0.2
16,959	+		HMPREF1078_RS07445	0.71	-1.1
16,960	-		HMPREF1078_RS07445	0.72	+0.0
16,972	+		HMPREF1078_RS07445	0.72	-1.5
16,994	+		HMPREF1078_RS07445	0.73	+1.2
17,023	+		HMPREF1078_RS07445	0.75	+2.8
17,024	-		HMPREF1078_RS07445	0.75	+1.8
17,140	-		HMPREF1078_RS07445	0.81	+0.6
17,218	-		HMPREF1078_RS07445	0.85	-0.9
17,465	+				+0.0
17,528	-				-1.0
17,531	+				-1.8
17,532	-				+1.2
17,532	-				-1.2
17,543	+				+0.1
17,543	+				+0.5
17,543	+				+0.7
17,544	-				-1.4
17,544	-				+1.2
17,544	-				+0.5
17,551	-				-0.6
17,573	+				+0.3
17,574	-				+0.8
17,578	-				-1.5
17,596	+				-1.2
17,638	+				-1.4
17,638	+				-0.6
17,639	-				-1.2
17,640	+				+0.3
17,640	+				+0.5
17,676	-				+0.5
17,680	+				-0.2
17,681	-				-0.5
17,719	+				-0.4
17,816	+				+1.5
17,967	+		HMPREF1078_RS07450	0.16	-1.3
17,993	-		HMPREF1078_RS07450	0.17	+0.0
18,052	+		HMPREF1078_RS07450	0.20	-1.6
18,052	+		HMPREF1078_RS07450	0.20	+0.0
18,328	-		HMPREF1078_RS07450	0.35	-0.6
18,334	+		HMPREF1078_RS07450	0.36	+0.0
18,392	+		HMPREF1078_RS07450	0.39	-0.3