Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07335 and HMPREF1078_RS07340 are separated by 31 nucleotides HMPREF1078_RS07340 and HMPREF1078_RS19835 overlap by 17 nucleotides HMPREF1078_RS19835 and HMPREF1078_RS07350 are separated by 2 nucleotides HMPREF1078_RS07350 and HMPREF1078_RS07355 are separated by 137 nucleotides
HMPREF1078_RS07335: HMPREF1078_RS07335 - hypothetical protein, at 897,018 to 897,935
_RS07335
HMPREF1078_RS07340: HMPREF1078_RS07340 - slipin family protein, at 897,967 to 898,590
_RS07340
HMPREF1078_RS19835: HMPREF1078_RS19835 - hypothetical protein, at 898,574 to 898,855
_RS19835
HMPREF1078_RS07350: HMPREF1078_RS07350 - GntR family transcriptional regulator, at 898,858 to 899,241
_RS07350
HMPREF1078_RS07355: HMPREF1078_RS07355 - hypothetical protein, at 899,379 to 899,735
_RS07355
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.967 kb on + strand at 896.980 kb on - strand at 897.024 kb on + strand at 897.024 kb on + strand at 897.047 kb on - strand at 897.116 kb on - strand, within HMPREF1078_RS07335 at 897.116 kb on - strand, within HMPREF1078_RS07335 at 897.119 kb on + strand, within HMPREF1078_RS07335 at 897.120 kb on - strand, within HMPREF1078_RS07335 at 897.149 kb on - strand, within HMPREF1078_RS07335 at 897.211 kb on + strand, within HMPREF1078_RS07335 at 897.263 kb on + strand, within HMPREF1078_RS07335 at 897.264 kb on - strand, within HMPREF1078_RS07335 at 897.264 kb on - strand, within HMPREF1078_RS07335 at 897.304 kb on - strand, within HMPREF1078_RS07335 at 897.306 kb on + strand, within HMPREF1078_RS07335 at 897.344 kb on + strand, within HMPREF1078_RS07335 at 897.381 kb on + strand, within HMPREF1078_RS07335 at 897.382 kb on - strand, within HMPREF1078_RS07335 at 897.469 kb on + strand, within HMPREF1078_RS07335 at 897.469 kb on + strand, within HMPREF1078_RS07335 at 897.480 kb on + strand, within HMPREF1078_RS07335 at 897.489 kb on - strand, within HMPREF1078_RS07335 at 897.533 kb on + strand, within HMPREF1078_RS07335 at 897.534 kb on - strand, within HMPREF1078_RS07335 at 897.639 kb on - strand, within HMPREF1078_RS07335 at 897.640 kb on + strand, within HMPREF1078_RS07335 at 897.641 kb on - strand, within HMPREF1078_RS07335 at 897.670 kb on - strand, within HMPREF1078_RS07335 at 897.704 kb on + strand, within HMPREF1078_RS07335 at 897.713 kb on - strand, within HMPREF1078_RS07335 at 897.725 kb on + strand, within HMPREF1078_RS07335 at 897.726 kb on - strand, within HMPREF1078_RS07335 at 897.726 kb on - strand, within HMPREF1078_RS07335 at 897.726 kb on - strand, within HMPREF1078_RS07335 at 897.726 kb on - strand, within HMPREF1078_RS07335 at 897.727 kb on + strand, within HMPREF1078_RS07335 at 897.727 kb on + strand, within HMPREF1078_RS07335 at 897.735 kb on + strand, within HMPREF1078_RS07335 at 897.792 kb on + strand, within HMPREF1078_RS07335 at 897.811 kb on + strand, within HMPREF1078_RS07335 at 897.811 kb on + strand, within HMPREF1078_RS07335 at 897.811 kb on + strand, within HMPREF1078_RS07335 at 897.812 kb on - strand, within HMPREF1078_RS07335 at 897.813 kb on + strand, within HMPREF1078_RS07335 at 897.814 kb on - strand, within HMPREF1078_RS07335 at 897.911 kb on + strand at 897.927 kb on + strand at 897.928 kb on - strand at 897.936 kb on - strand at 897.991 kb on - strand at 898.096 kb on - strand, within HMPREF1078_RS07340 at 898.114 kb on + strand, within HMPREF1078_RS07340 at 898.115 kb on - strand, within HMPREF1078_RS07340 at 898.270 kb on - strand, within HMPREF1078_RS07340 at 898.270 kb on - strand, within HMPREF1078_RS07340 at 898.399 kb on - strand, within HMPREF1078_RS07340 at 898.422 kb on + strand, within HMPREF1078_RS07340 at 898.422 kb on + strand, within HMPREF1078_RS07340 at 898.422 kb on + strand, within HMPREF1078_RS07340 at 898.423 kb on - strand, within HMPREF1078_RS07340 at 898.423 kb on - strand, within HMPREF1078_RS07340 at 898.493 kb on - strand, within HMPREF1078_RS07340 at 898.493 kb on - strand, within HMPREF1078_RS07340 at 898.493 kb on - strand, within HMPREF1078_RS07340 at 898.522 kb on - strand, within HMPREF1078_RS07340 at 898.549 kb on - strand at 898.558 kb on + strand at 898.579 kb on - strand at 898.580 kb on + strand at 898.581 kb on - strand at 898.581 kb on - strand at 898.581 kb on - strand at 898.601 kb on - strand at 898.616 kb on - strand, within HMPREF1078_RS19835 at 898.645 kb on - strand, within HMPREF1078_RS19835 at 898.745 kb on + strand, within HMPREF1078_RS19835 at 898.751 kb on + strand, within HMPREF1078_RS19835 at 898.751 kb on + strand, within HMPREF1078_RS19835 at 898.768 kb on - strand, within HMPREF1078_RS19835 at 898.768 kb on - strand, within HMPREF1078_RS19835 at 898.782 kb on - strand, within HMPREF1078_RS19835 at 898.841 kb on + strand at 898.842 kb on - strand at 898.856 kb on - strand at 898.888 kb on + strand at 898.888 kb on + strand at 898.889 kb on - strand at 898.889 kb on - strand at 898.910 kb on - strand, within HMPREF1078_RS07350 at 898.993 kb on + strand, within HMPREF1078_RS07350 at 898.993 kb on + strand, within HMPREF1078_RS07350 at 899.089 kb on + strand, within HMPREF1078_RS07350 at 899.101 kb on + strand, within HMPREF1078_RS07350 at 899.102 kb on - strand, within HMPREF1078_RS07350 at 899.107 kb on + strand, within HMPREF1078_RS07350 at 899.148 kb on + strand, within HMPREF1078_RS07350 at 899.149 kb on - strand, within HMPREF1078_RS07350 at 899.200 kb on + strand, within HMPREF1078_RS07350 at 899.201 kb on - strand, within HMPREF1078_RS07350 at 899.209 kb on + strand at 899.209 kb on - strand at 899.220 kb on - strand at 899.224 kb on + strand at 899.249 kb on + strand at 899.249 kb on + strand at 899.260 kb on - strand at 899.264 kb on + strand at 899.265 kb on - strand at 899.268 kb on - strand at 899.268 kb on - strand at 899.272 kb on + strand at 899.282 kb on - strand at 899.283 kb on + strand at 899.302 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 896,967 + -0.7 896,980 - +0.8 897,024 + -1.1 897,024 + +0.2 897,047 - +0.8 897,116 - HMPREF1078_RS07335 0.11 -0.2 897,116 - HMPREF1078_RS07335 0.11 -0.5 897,119 + HMPREF1078_RS07335 0.11 -0.9 897,120 - HMPREF1078_RS07335 0.11 +0.2 897,149 - HMPREF1078_RS07335 0.14 -2.6 897,211 + HMPREF1078_RS07335 0.21 +0.1 897,263 + HMPREF1078_RS07335 0.27 -1.0 897,264 - HMPREF1078_RS07335 0.27 +0.0 897,264 - HMPREF1078_RS07335 0.27 -0.6 897,304 - HMPREF1078_RS07335 0.31 +0.7 897,306 + HMPREF1078_RS07335 0.31 -0.9 897,344 + HMPREF1078_RS07335 0.36 -0.2 897,381 + HMPREF1078_RS07335 0.40 -0.8 897,382 - HMPREF1078_RS07335 0.40 +2.3 897,469 + HMPREF1078_RS07335 0.49 +0.4 897,469 + HMPREF1078_RS07335 0.49 +1.2 897,480 + HMPREF1078_RS07335 0.50 -0.4 897,489 - HMPREF1078_RS07335 0.51 +0.3 897,533 + HMPREF1078_RS07335 0.56 -0.6 897,534 - HMPREF1078_RS07335 0.56 -0.5 897,639 - HMPREF1078_RS07335 0.68 -1.5 897,640 + HMPREF1078_RS07335 0.68 -0.3 897,641 - HMPREF1078_RS07335 0.68 +1.4 897,670 - HMPREF1078_RS07335 0.71 -0.5 897,704 + HMPREF1078_RS07335 0.75 -1.1 897,713 - HMPREF1078_RS07335 0.76 +0.4 897,725 + HMPREF1078_RS07335 0.77 -1.7 897,726 - HMPREF1078_RS07335 0.77 +1.1 897,726 - HMPREF1078_RS07335 0.77 -0.7 897,726 - HMPREF1078_RS07335 0.77 +0.8 897,726 - HMPREF1078_RS07335 0.77 +0.5 897,727 + HMPREF1078_RS07335 0.77 -0.2 897,727 + HMPREF1078_RS07335 0.77 -0.8 897,735 + HMPREF1078_RS07335 0.78 +1.1 897,792 + HMPREF1078_RS07335 0.84 -2.0 897,811 + HMPREF1078_RS07335 0.86 -1.1 897,811 + HMPREF1078_RS07335 0.86 +0.4 897,811 + HMPREF1078_RS07335 0.86 -0.5 897,812 - HMPREF1078_RS07335 0.86 +0.4 897,813 + HMPREF1078_RS07335 0.87 -0.9 897,814 - HMPREF1078_RS07335 0.87 -0.1 897,911 + -0.1 897,927 + +0.4 897,928 - +1.4 897,936 - -0.9 897,991 - +0.6 898,096 - HMPREF1078_RS07340 0.21 -2.0 898,114 + HMPREF1078_RS07340 0.24 +1.3 898,115 - HMPREF1078_RS07340 0.24 -0.5 898,270 - HMPREF1078_RS07340 0.49 -0.9 898,270 - HMPREF1078_RS07340 0.49 +0.5 898,399 - HMPREF1078_RS07340 0.69 -0.5 898,422 + HMPREF1078_RS07340 0.73 +1.1 898,422 + HMPREF1078_RS07340 0.73 -1.1 898,422 + HMPREF1078_RS07340 0.73 -0.8 898,423 - HMPREF1078_RS07340 0.73 -0.6 898,423 - HMPREF1078_RS07340 0.73 -1.9 898,493 - HMPREF1078_RS07340 0.84 -1.1 898,493 - HMPREF1078_RS07340 0.84 -0.8 898,493 - HMPREF1078_RS07340 0.84 -0.1 898,522 - HMPREF1078_RS07340 0.89 +0.3 898,549 - -0.2 898,558 + +1.1 898,579 - -1.9 898,580 + -1.3 898,581 - +0.8 898,581 - -0.1 898,581 - +0.5 898,601 - -0.5 898,616 - HMPREF1078_RS19835 0.15 +1.0 898,645 - HMPREF1078_RS19835 0.25 -1.5 898,745 + HMPREF1078_RS19835 0.61 +0.3 898,751 + HMPREF1078_RS19835 0.63 -0.1 898,751 + HMPREF1078_RS19835 0.63 +0.2 898,768 - HMPREF1078_RS19835 0.69 +0.1 898,768 - HMPREF1078_RS19835 0.69 +0.2 898,782 - HMPREF1078_RS19835 0.74 +0.7 898,841 + -0.2 898,842 - -0.9 898,856 - -0.4 898,888 + +0.1 898,888 + -1.3 898,889 - -0.6 898,889 - +0.0 898,910 - HMPREF1078_RS07350 0.14 -1.3 898,993 + HMPREF1078_RS07350 0.35 -0.6 898,993 + HMPREF1078_RS07350 0.35 -0.4 899,089 + HMPREF1078_RS07350 0.60 -0.8 899,101 + HMPREF1078_RS07350 0.63 -0.9 899,102 - HMPREF1078_RS07350 0.64 -1.1 899,107 + HMPREF1078_RS07350 0.65 -1.2 899,148 + HMPREF1078_RS07350 0.76 -1.3 899,149 - HMPREF1078_RS07350 0.76 -1.5 899,200 + HMPREF1078_RS07350 0.89 -0.0 899,201 - HMPREF1078_RS07350 0.89 -0.2 899,209 + +2.0 899,209 - -1.8 899,220 - -2.5 899,224 + +0.2 899,249 + +0.8 899,249 + -0.4 899,260 - -1.1 899,264 + +0.2 899,265 - -1.2 899,268 - +0.9 899,268 - -1.0 899,272 + -0.1 899,282 - -0.1 899,283 + +0.4 899,302 + +0.2
Or see this region's nucleotide sequence