Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07150

Experiment: D-Maltose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS07145 and HMPREF1078_RS07150 are separated by 315 nucleotidesHMPREF1078_RS07150 and HMPREF1078_RS07155 are separated by 6 nucleotidesHMPREF1078_RS07155 and HMPREF1078_RS07160 are separated by 52 nucleotides HMPREF1078_RS07145: HMPREF1078_RS07145 - discoidin domain-containing protein, at 849,095 to 852,721 _RS07145 HMPREF1078_RS07150: HMPREF1078_RS07150 - HAMP domain-containing sensor histidine kinase, at 853,037 to 854,410 _RS07150 HMPREF1078_RS07155: HMPREF1078_RS07155 - response regulator transcription factor, at 854,417 to 855,100 _RS07155 HMPREF1078_RS07160: HMPREF1078_RS07160 - DUF4254 domain-containing protein, at 855,153 to 855,758 _RS07160 Position (kb) 853 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 852.063 kb on + strand, within HMPREF1078_RS07145at 852.074 kb on + strand, within HMPREF1078_RS07145at 852.074 kb on + strand, within HMPREF1078_RS07145at 852.074 kb on + strand, within HMPREF1078_RS07145at 852.074 kb on + strand, within HMPREF1078_RS07145at 852.139 kb on + strand, within HMPREF1078_RS07145at 852.286 kb on + strand, within HMPREF1078_RS07145at 852.287 kb on - strand, within HMPREF1078_RS07145at 852.393 kb on - strandat 852.561 kb on + strandat 852.562 kb on - strandat 852.569 kb on - strandat 852.645 kb on + strandat 852.650 kb on - strandat 852.679 kb on + strandat 852.696 kb on + strandat 852.697 kb on - strandat 852.700 kb on + strandat 852.700 kb on + strandat 852.707 kb on + strandat 852.710 kb on - strandat 852.711 kb on - strandat 852.725 kb on + strandat 852.725 kb on + strandat 852.726 kb on - strandat 852.727 kb on + strandat 852.727 kb on + strandat 852.727 kb on + strandat 852.727 kb on + strandat 852.760 kb on + strandat 852.761 kb on - strandat 852.830 kb on - strandat 852.835 kb on + strandat 852.836 kb on - strandat 852.902 kb on - strandat 852.935 kb on - strandat 853.011 kb on - strandat 853.012 kb on + strandat 853.012 kb on + strandat 853.012 kb on + strandat 853.012 kb on + strandat 853.013 kb on - strandat 853.013 kb on - strandat 853.013 kb on - strandat 853.013 kb on - strandat 853.015 kb on - strandat 853.015 kb on - strandat 853.024 kb on - strandat 853.069 kb on + strandat 853.069 kb on + strandat 853.070 kb on - strandat 853.097 kb on + strandat 853.122 kb on + strandat 853.122 kb on + strandat 853.188 kb on - strand, within HMPREF1078_RS07150at 853.195 kb on - strand, within HMPREF1078_RS07150at 853.195 kb on - strand, within HMPREF1078_RS07150at 853.195 kb on - strand, within HMPREF1078_RS07150at 853.201 kb on + strand, within HMPREF1078_RS07150at 853.363 kb on + strand, within HMPREF1078_RS07150at 853.394 kb on + strand, within HMPREF1078_RS07150at 853.394 kb on + strand, within HMPREF1078_RS07150at 853.397 kb on + strand, within HMPREF1078_RS07150at 853.398 kb on - strand, within HMPREF1078_RS07150at 853.398 kb on - strand, within HMPREF1078_RS07150at 853.398 kb on - strand, within HMPREF1078_RS07150at 853.455 kb on - strand, within HMPREF1078_RS07150at 853.555 kb on + strand, within HMPREF1078_RS07150at 853.559 kb on + strand, within HMPREF1078_RS07150at 853.597 kb on - strand, within HMPREF1078_RS07150at 853.597 kb on - strand, within HMPREF1078_RS07150at 853.706 kb on - strand, within HMPREF1078_RS07150at 853.710 kb on + strand, within HMPREF1078_RS07150at 853.711 kb on - strand, within HMPREF1078_RS07150at 853.714 kb on + strand, within HMPREF1078_RS07150at 853.724 kb on - strand, within HMPREF1078_RS07150at 853.822 kb on + strand, within HMPREF1078_RS07150at 853.901 kb on + strand, within HMPREF1078_RS07150at 853.921 kb on + strand, within HMPREF1078_RS07150at 854.099 kb on - strand, within HMPREF1078_RS07150at 854.107 kb on + strand, within HMPREF1078_RS07150at 854.129 kb on - strand, within HMPREF1078_RS07150at 854.160 kb on + strand, within HMPREF1078_RS07150at 854.199 kb on + strand, within HMPREF1078_RS07150at 854.200 kb on - strand, within HMPREF1078_RS07150at 854.218 kb on + strand, within HMPREF1078_RS07150at 854.219 kb on - strand, within HMPREF1078_RS07150at 854.316 kb on - strandat 854.319 kb on + strandat 854.319 kb on + strandat 854.320 kb on - strandat 854.320 kb on - strandat 854.389 kb on - strandat 854.416 kb on + strandat 854.501 kb on + strand, within HMPREF1078_RS07155at 854.501 kb on + strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.513 kb on + strand, within HMPREF1078_RS07155at 854.580 kb on - strand, within HMPREF1078_RS07155at 854.587 kb on + strand, within HMPREF1078_RS07155at 854.814 kb on - strand, within HMPREF1078_RS07155at 854.840 kb on + strand, within HMPREF1078_RS07155at 854.958 kb on + strand, within HMPREF1078_RS07155at 854.958 kb on + strand, within HMPREF1078_RS07155at 854.967 kb on + strand, within HMPREF1078_RS07155at 854.984 kb on + strand, within HMPREF1078_RS07155at 854.985 kb on - strand, within HMPREF1078_RS07155at 854.985 kb on - strand, within HMPREF1078_RS07155at 855.020 kb on + strand, within HMPREF1078_RS07155at 855.083 kb on + strandat 855.083 kb on + strandat 855.084 kb on - strandat 855.085 kb on + strandat 855.112 kb on - strandat 855.112 kb on - strandat 855.153 kb on - strandat 855.182 kb on - strandat 855.204 kb on + strandat 855.204 kb on + strandat 855.205 kb on - strandat 855.205 kb on - strandat 855.205 kb on - strandat 855.209 kb on + strandat 855.223 kb on + strand, within HMPREF1078_RS07160at 855.223 kb on + strand, within HMPREF1078_RS07160at 855.223 kb on + strand, within HMPREF1078_RS07160at 855.224 kb on - strand, within HMPREF1078_RS07160at 855.224 kb on - strand, within HMPREF1078_RS07160at 855.236 kb on - strand, within HMPREF1078_RS07160at 855.239 kb on + strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.260 kb on + strand, within HMPREF1078_RS07160at 855.261 kb on - strand, within HMPREF1078_RS07160at 855.262 kb on + strand, within HMPREF1078_RS07160at 855.262 kb on + strand, within HMPREF1078_RS07160at 855.270 kb on + strand, within HMPREF1078_RS07160at 855.271 kb on - strand, within HMPREF1078_RS07160at 855.277 kb on - strand, within HMPREF1078_RS07160at 855.311 kb on + strand, within HMPREF1078_RS07160at 855.311 kb on + strand, within HMPREF1078_RS07160at 855.312 kb on - strand, within HMPREF1078_RS07160at 855.321 kb on - strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
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852,063 + HMPREF1078_RS07145 0.82 +0.2
852,074 + HMPREF1078_RS07145 0.82 -0.0
852,074 + HMPREF1078_RS07145 0.82 -0.1
852,074 + HMPREF1078_RS07145 0.82 -0.7
852,074 + HMPREF1078_RS07145 0.82 +0.8
852,139 + HMPREF1078_RS07145 0.84 +0.7
852,286 + HMPREF1078_RS07145 0.88 +0.9
852,287 - HMPREF1078_RS07145 0.88 -0.1
852,393 - -0.5
852,561 + +0.0
852,562 - -0.5
852,569 - -1.6
852,645 + -0.5
852,650 - -0.7
852,679 + -0.3
852,696 + -2.2
852,697 - +0.6
852,700 + -0.8
852,700 + +3.9
852,707 + -0.9
852,710 - +1.6
852,711 - +0.6
852,725 + +0.2
852,725 + +1.5
852,726 - -0.6
852,727 + +0.3
852,727 + -0.2
852,727 + -1.1
852,727 + -0.7
852,760 + +0.2
852,761 - -0.2
852,830 - -0.6
852,835 + +0.4
852,836 - -0.6
852,902 - -0.4
852,935 - +0.7
853,011 - -0.6
853,012 + +0.4
853,012 + -0.5
853,012 + -0.3
853,012 + +0.6
853,013 - -0.1
853,013 - -1.1
853,013 - -1.3
853,013 - +0.2
853,015 - -1.9
853,015 - -2.7
853,024 - +0.5
853,069 + -3.3
853,069 + +1.2
853,070 - -0.2
853,097 + -0.3
853,122 + +0.6
853,122 + +0.8
853,188 - HMPREF1078_RS07150 0.11 -0.1
853,195 - HMPREF1078_RS07150 0.11 +0.7
853,195 - HMPREF1078_RS07150 0.11 -2.2
853,195 - HMPREF1078_RS07150 0.11 +1.5
853,201 + HMPREF1078_RS07150 0.12 -0.6
853,363 + HMPREF1078_RS07150 0.24 +0.2
853,394 + HMPREF1078_RS07150 0.26 -0.1
853,394 + HMPREF1078_RS07150 0.26 -0.1
853,397 + HMPREF1078_RS07150 0.26 +3.0
853,398 - HMPREF1078_RS07150 0.26 +1.5
853,398 - HMPREF1078_RS07150 0.26 -2.7
853,398 - HMPREF1078_RS07150 0.26 +0.6
853,455 - HMPREF1078_RS07150 0.30 -0.9
853,555 + HMPREF1078_RS07150 0.38 -0.2
853,559 + HMPREF1078_RS07150 0.38 -0.8
853,597 - HMPREF1078_RS07150 0.41 -0.4
853,597 - HMPREF1078_RS07150 0.41 -1.2
853,706 - HMPREF1078_RS07150 0.49 -0.4
853,710 + HMPREF1078_RS07150 0.49 +1.0
853,711 - HMPREF1078_RS07150 0.49 -0.6
853,714 + HMPREF1078_RS07150 0.49 -0.1
853,724 - HMPREF1078_RS07150 0.50 -0.7
853,822 + HMPREF1078_RS07150 0.57 +0.2
853,901 + HMPREF1078_RS07150 0.63 +0.6
853,921 + HMPREF1078_RS07150 0.64 -1.3
854,099 - HMPREF1078_RS07150 0.77 +0.2
854,107 + HMPREF1078_RS07150 0.78 +0.2
854,129 - HMPREF1078_RS07150 0.79 -0.2
854,160 + HMPREF1078_RS07150 0.82 +0.4
854,199 + HMPREF1078_RS07150 0.85 +0.6
854,200 - HMPREF1078_RS07150 0.85 +1.5
854,218 + HMPREF1078_RS07150 0.86 +0.5
854,219 - HMPREF1078_RS07150 0.86 -1.2
854,316 - -0.9
854,319 + -1.2
854,319 + -1.5
854,320 - +0.5
854,320 - -0.2
854,389 - +0.2
854,416 + +0.5
854,501 + HMPREF1078_RS07155 0.12 -0.1
854,501 + HMPREF1078_RS07155 0.12 +1.1
854,502 - HMPREF1078_RS07155 0.12 +0.6
854,502 - HMPREF1078_RS07155 0.12 +0.0
854,502 - HMPREF1078_RS07155 0.12 -0.3
854,513 + HMPREF1078_RS07155 0.14 -1.0
854,580 - HMPREF1078_RS07155 0.24 -0.6
854,587 + HMPREF1078_RS07155 0.25 +0.4
854,814 - HMPREF1078_RS07155 0.58 -2.0
854,840 + HMPREF1078_RS07155 0.62 -0.6
854,958 + HMPREF1078_RS07155 0.79 -0.2
854,958 + HMPREF1078_RS07155 0.79 -0.1
854,967 + HMPREF1078_RS07155 0.80 +0.1
854,984 + HMPREF1078_RS07155 0.83 +0.2
854,985 - HMPREF1078_RS07155 0.83 -1.0
854,985 - HMPREF1078_RS07155 0.83 +0.5
855,020 + HMPREF1078_RS07155 0.88 -1.0
855,083 + -0.3
855,083 + +0.8
855,084 - -0.1
855,085 + +0.5
855,112 - -0.4
855,112 - -0.1
855,153 - -0.7
855,182 - +2.0
855,204 + -1.3
855,204 + +0.3
855,205 - -0.7
855,205 - +0.4
855,205 - +0.2
855,209 + -0.3
855,223 + HMPREF1078_RS07160 0.12 +2.0
855,223 + HMPREF1078_RS07160 0.12 +0.0
855,223 + HMPREF1078_RS07160 0.12 -0.4
855,224 - HMPREF1078_RS07160 0.12 +2.0
855,224 - HMPREF1078_RS07160 0.12 +1.0
855,236 - HMPREF1078_RS07160 0.14 +0.0
855,239 + HMPREF1078_RS07160 0.14 +0.7
855,240 - HMPREF1078_RS07160 0.14 +1.0
855,240 - HMPREF1078_RS07160 0.14 +0.2
855,240 - HMPREF1078_RS07160 0.14 -1.1
855,260 + HMPREF1078_RS07160 0.18 +0.4
855,261 - HMPREF1078_RS07160 0.18 +2.0
855,262 + HMPREF1078_RS07160 0.18 -1.0
855,262 + HMPREF1078_RS07160 0.18 -0.4
855,270 + HMPREF1078_RS07160 0.19 -0.8
855,271 - HMPREF1078_RS07160 0.19 -0.1
855,277 - HMPREF1078_RS07160 0.20 -0.3
855,311 + HMPREF1078_RS07160 0.26 +3.0
855,311 + HMPREF1078_RS07160 0.26 +0.2
855,312 - HMPREF1078_RS07160 0.26 -0.1
855,321 - HMPREF1078_RS07160 0.28 +0.4
855,398 + HMPREF1078_RS07160 0.40 -0.5
855,398 + HMPREF1078_RS07160 0.40 +2.0
855,398 + HMPREF1078_RS07160 0.40 -0.4

Or see this region's nucleotide sequence