Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06735 and HMPREF1078_RS06740 are separated by 152 nucleotides HMPREF1078_RS06740 and HMPREF1078_RS06745 overlap by 4 nucleotides HMPREF1078_RS06745 and HMPREF1078_RS06750 overlap by 11 nucleotides HMPREF1078_RS06750 and HMPREF1078_RS06755 overlap by 1 nucleotides HMPREF1078_RS06755 and HMPREF1078_RS06760 are separated by 3 nucleotides
HMPREF1078_RS06735: HMPREF1078_RS06735 - Gfo/Idh/MocA family oxidoreductase, at 751,186 to 752,622
_RS06735
HMPREF1078_RS06740: HMPREF1078_RS06740 - DUF4271 domain-containing protein, at 752,775 to 753,503
_RS06740
HMPREF1078_RS06745: HMPREF1078_RS06745 - uroporphyrinogen-III synthase, at 753,500 to 754,267
_RS06745
HMPREF1078_RS06750: HMPREF1078_RS06750 - ribonuclease P protein component, at 754,257 to 754,643
_RS06750
HMPREF1078_RS06755: HMPREF1078_RS06755 - membrane protein insertion efficiency factor YidD, at 754,643 to 754,864
_RS06755
HMPREF1078_RS06760: HMPREF1078_RS06760 - TatD family hydrolase, at 754,868 to 755,500
_RS06760
Position (kb) 753
754
755 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 752.609 kb on - strand at 752.609 kb on - strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.612 kb on - strand at 752.616 kb on + strand at 752.633 kb on - strand at 752.646 kb on - strand at 752.724 kb on - strand at 752.747 kb on - strand at 752.760 kb on + strand at 752.760 kb on + strand at 752.782 kb on + strand at 752.783 kb on - strand at 752.783 kb on - strand at 752.793 kb on + strand at 752.794 kb on - strand at 752.794 kb on - strand at 752.794 kb on - strand at 752.864 kb on + strand, within HMPREF1078_RS06740 at 752.954 kb on - strand, within HMPREF1078_RS06740 at 752.965 kb on + strand, within HMPREF1078_RS06740 at 752.965 kb on + strand, within HMPREF1078_RS06740 at 753.056 kb on - strand, within HMPREF1078_RS06740 at 753.057 kb on + strand, within HMPREF1078_RS06740 at 753.094 kb on + strand, within HMPREF1078_RS06740 at 753.191 kb on + strand, within HMPREF1078_RS06740 at 753.196 kb on - strand, within HMPREF1078_RS06740 at 753.197 kb on + strand, within HMPREF1078_RS06740 at 753.216 kb on + strand, within HMPREF1078_RS06740 at 753.224 kb on + strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.225 kb on - strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.288 kb on + strand, within HMPREF1078_RS06740 at 753.289 kb on - strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.292 kb on + strand, within HMPREF1078_RS06740 at 753.293 kb on - strand, within HMPREF1078_RS06740 at 753.293 kb on - strand, within HMPREF1078_RS06740 at 753.296 kb on + strand, within HMPREF1078_RS06740 at 753.296 kb on + strand, within HMPREF1078_RS06740 at 753.297 kb on - strand, within HMPREF1078_RS06740 at 753.298 kb on + strand, within HMPREF1078_RS06740 at 753.317 kb on + strand, within HMPREF1078_RS06740 at 753.317 kb on + strand, within HMPREF1078_RS06740 at 753.324 kb on + strand, within HMPREF1078_RS06740 at 753.362 kb on - strand, within HMPREF1078_RS06740 at 753.396 kb on + strand, within HMPREF1078_RS06740 at 753.396 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.400 kb on + strand, within HMPREF1078_RS06740 at 753.408 kb on + strand, within HMPREF1078_RS06740 at 753.447 kb on + strand at 753.455 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.462 kb on + strand at 753.610 kb on + strand, within HMPREF1078_RS06745 at 753.615 kb on + strand, within HMPREF1078_RS06745 at 753.615 kb on + strand, within HMPREF1078_RS06745 at 753.631 kb on + strand, within HMPREF1078_RS06745 at 753.670 kb on + strand, within HMPREF1078_RS06745 at 753.670 kb on + strand, within HMPREF1078_RS06745 at 753.761 kb on + strand, within HMPREF1078_RS06745 at 753.769 kb on + strand, within HMPREF1078_RS06745 at 753.803 kb on + strand, within HMPREF1078_RS06745 at 753.805 kb on + strand, within HMPREF1078_RS06745 at 753.812 kb on + strand, within HMPREF1078_RS06745 at 753.812 kb on + strand, within HMPREF1078_RS06745 at 753.823 kb on + strand, within HMPREF1078_RS06745 at 753.823 kb on + strand, within HMPREF1078_RS06745 at 753.865 kb on + strand, within HMPREF1078_RS06745 at 753.896 kb on + strand, within HMPREF1078_RS06745 at 753.922 kb on + strand, within HMPREF1078_RS06745 at 753.922 kb on + strand, within HMPREF1078_RS06745 at 753.923 kb on - strand, within HMPREF1078_RS06745 at 753.940 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.979 kb on + strand, within HMPREF1078_RS06745 at 753.983 kb on + strand, within HMPREF1078_RS06745 at 754.009 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.033 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.105 kb on + strand, within HMPREF1078_RS06745 at 754.107 kb on + strand, within HMPREF1078_RS06745 at 754.223 kb on + strand at 754.243 kb on + strand at 754.246 kb on + strand at 754.624 kb on + strand at 754.624 kb on + strand at 754.625 kb on - strand at 754.645 kb on - strand at 754.682 kb on + strand, within HMPREF1078_RS06755 at 754.699 kb on + strand, within HMPREF1078_RS06755 at 754.730 kb on + strand, within HMPREF1078_RS06755 at 754.738 kb on + strand, within HMPREF1078_RS06755 at 754.751 kb on + strand, within HMPREF1078_RS06755 at 754.752 kb on - strand, within HMPREF1078_RS06755 at 754.796 kb on + strand, within HMPREF1078_RS06755 at 754.797 kb on - strand, within HMPREF1078_RS06755 at 754.862 kb on + strand at 754.874 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.884 kb on + strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.885 kb on - strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.888 kb on + strand at 754.889 kb on - strand at 754.889 kb on - strand at 754.926 kb on + strand at 754.926 kb on + strand at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.945 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 754.999 kb on + strand, within HMPREF1078_RS06760 at 755.000 kb on - strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.001 kb on + strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.002 kb on - strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.003 kb on + strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.004 kb on - strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.005 kb on + strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.006 kb on - strand, within HMPREF1078_RS06760 at 755.058 kb on + strand, within HMPREF1078_RS06760 at 755.066 kb on - strand, within HMPREF1078_RS06760 at 755.235 kb on + strand, within HMPREF1078_RS06760 at 755.246 kb on - strand, within HMPREF1078_RS06760 at 755.247 kb on + strand, within HMPREF1078_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 752,609 - +0.3 752,609 - +2.0 752,611 + -0.1 752,611 + +0.0 752,611 + -0.5 752,612 - +1.3 752,616 + -0.5 752,633 - -2.4 752,646 - +0.6 752,724 - -2.3 752,747 - -2.6 752,760 + -1.7 752,760 + -0.4 752,782 + -2.4 752,783 - -3.4 752,783 - -2.4 752,793 + -4.0 752,794 - -2.1 752,794 - -4.1 752,794 - -2.6 752,864 + HMPREF1078_RS06740 0.12 -2.7 752,954 - HMPREF1078_RS06740 0.25 +1.8 752,965 + HMPREF1078_RS06740 0.26 -2.4 752,965 + HMPREF1078_RS06740 0.26 -1.9 753,056 - HMPREF1078_RS06740 0.39 -0.6 753,057 + HMPREF1078_RS06740 0.39 -2.4 753,094 + HMPREF1078_RS06740 0.44 -3.8 753,191 + HMPREF1078_RS06740 0.57 -1.9 753,196 - HMPREF1078_RS06740 0.58 -2.2 753,197 + HMPREF1078_RS06740 0.58 +0.7 753,216 + HMPREF1078_RS06740 0.60 -3.6 753,224 + HMPREF1078_RS06740 0.62 -3.2 753,225 - HMPREF1078_RS06740 0.62 -4.2 753,225 - HMPREF1078_RS06740 0.62 -2.6 753,225 - HMPREF1078_RS06740 0.62 +1.0 753,288 + HMPREF1078_RS06740 0.70 -4.1 753,288 + HMPREF1078_RS06740 0.70 -3.8 753,288 + HMPREF1078_RS06740 0.70 -2.7 753,288 + HMPREF1078_RS06740 0.70 -2.8 753,289 - HMPREF1078_RS06740 0.71 -2.4 753,292 + HMPREF1078_RS06740 0.71 -4.2 753,292 + HMPREF1078_RS06740 0.71 -2.6 753,292 + HMPREF1078_RS06740 0.71 -2.1 753,292 + HMPREF1078_RS06740 0.71 -3.5 753,293 - HMPREF1078_RS06740 0.71 -3.8 753,293 - HMPREF1078_RS06740 0.71 -3.9 753,296 + HMPREF1078_RS06740 0.71 -0.1 753,296 + HMPREF1078_RS06740 0.71 -2.4 753,297 - HMPREF1078_RS06740 0.72 -3.2 753,298 + HMPREF1078_RS06740 0.72 -3.9 753,317 + HMPREF1078_RS06740 0.74 -4.2 753,317 + HMPREF1078_RS06740 0.74 -1.1 753,324 + HMPREF1078_RS06740 0.75 -2.5 753,362 - HMPREF1078_RS06740 0.81 -0.3 753,396 + HMPREF1078_RS06740 0.85 -5.9 753,396 + HMPREF1078_RS06740 0.85 -1.1 753,400 + HMPREF1078_RS06740 0.86 -3.8 753,400 + HMPREF1078_RS06740 0.86 -3.7 753,400 + HMPREF1078_RS06740 0.86 -2.5 753,400 + HMPREF1078_RS06740 0.86 -5.2 753,400 + HMPREF1078_RS06740 0.86 -4.3 753,400 + HMPREF1078_RS06740 0.86 -1.9 753,408 + HMPREF1078_RS06740 0.87 -1.8 753,447 + +0.2 753,455 + -4.8 753,462 + -1.9 753,462 + -2.6 753,462 + -1.8 753,610 + HMPREF1078_RS06745 0.14 -0.8 753,615 + HMPREF1078_RS06745 0.15 -1.1 753,615 + HMPREF1078_RS06745 0.15 +0.2 753,631 + HMPREF1078_RS06745 0.17 +0.7 753,670 + HMPREF1078_RS06745 0.22 +0.7 753,670 + HMPREF1078_RS06745 0.22 +0.7 753,761 + HMPREF1078_RS06745 0.34 +1.0 753,769 + HMPREF1078_RS06745 0.35 +1.0 753,803 + HMPREF1078_RS06745 0.39 -0.4 753,805 + HMPREF1078_RS06745 0.40 +0.7 753,812 + HMPREF1078_RS06745 0.41 -2.5 753,812 + HMPREF1078_RS06745 0.41 -0.3 753,823 + HMPREF1078_RS06745 0.42 -1.9 753,823 + HMPREF1078_RS06745 0.42 -0.7 753,865 + HMPREF1078_RS06745 0.48 -0.3 753,896 + HMPREF1078_RS06745 0.52 +0.7 753,922 + HMPREF1078_RS06745 0.55 +0.0 753,922 + HMPREF1078_RS06745 0.55 -1.3 753,923 - HMPREF1078_RS06745 0.55 -1.6 753,940 + HMPREF1078_RS06745 0.57 -1.1 753,979 + HMPREF1078_RS06745 0.62 -1.4 753,979 + HMPREF1078_RS06745 0.62 -0.7 753,979 + HMPREF1078_RS06745 0.62 -1.6 753,983 + HMPREF1078_RS06745 0.63 -0.1 754,009 + HMPREF1078_RS06745 0.66 -0.1 754,033 + HMPREF1078_RS06745 0.69 +0.2 754,033 + HMPREF1078_RS06745 0.69 -0.3 754,033 + HMPREF1078_RS06745 0.69 -0.6 754,105 + HMPREF1078_RS06745 0.79 +0.2 754,105 + HMPREF1078_RS06745 0.79 -1.2 754,105 + HMPREF1078_RS06745 0.79 -0.6 754,107 + HMPREF1078_RS06745 0.79 -0.9 754,223 + -1.8 754,243 + -0.5 754,246 + -0.3 754,624 + +1.0 754,624 + -3.1 754,625 - +0.0 754,645 - +0.9 754,682 + HMPREF1078_RS06755 0.18 +0.5 754,699 + HMPREF1078_RS06755 0.25 -0.8 754,730 + HMPREF1078_RS06755 0.39 +0.7 754,738 + HMPREF1078_RS06755 0.43 -1.7 754,751 + HMPREF1078_RS06755 0.49 +0.6 754,752 - HMPREF1078_RS06755 0.49 -0.8 754,796 + HMPREF1078_RS06755 0.69 -0.5 754,797 - HMPREF1078_RS06755 0.69 -0.2 754,862 + +3.8 754,874 + -0.2 754,884 + +0.7 754,884 + -1.0 754,884 + +0.4 754,884 + -0.7 754,884 + -1.1 754,884 + +0.9 754,884 + -1.9 754,884 + -0.7 754,884 + -0.6 754,885 - -0.7 754,885 - +1.3 754,885 - -1.4 754,885 - +0.7 754,885 - +1.7 754,885 - -0.1 754,888 + -0.1 754,888 + -0.4 754,888 + -0.3 754,888 + +0.4 754,889 - -0.6 754,889 - +0.7 754,926 + +0.5 754,926 + +0.7 754,945 + HMPREF1078_RS06760 0.12 -1.2 754,945 + HMPREF1078_RS06760 0.12 -0.5 754,945 + HMPREF1078_RS06760 0.12 +0.3 754,999 + HMPREF1078_RS06760 0.21 -0.2 754,999 + HMPREF1078_RS06760 0.21 -0.1 754,999 + HMPREF1078_RS06760 0.21 +0.3 754,999 + HMPREF1078_RS06760 0.21 +0.6 754,999 + HMPREF1078_RS06760 0.21 +0.1 754,999 + HMPREF1078_RS06760 0.21 +1.0 754,999 + HMPREF1078_RS06760 0.21 +0.2 755,000 - HMPREF1078_RS06760 0.21 -2.1 755,001 + HMPREF1078_RS06760 0.21 -0.0 755,001 + HMPREF1078_RS06760 0.21 -0.0 755,001 + HMPREF1078_RS06760 0.21 -3.3 755,001 + HMPREF1078_RS06760 0.21 -1.7 755,001 + HMPREF1078_RS06760 0.21 +0.0 755,001 + HMPREF1078_RS06760 0.21 +0.0 755,002 - HMPREF1078_RS06760 0.21 +0.3 755,002 - HMPREF1078_RS06760 0.21 +0.4 755,002 - HMPREF1078_RS06760 0.21 +0.0 755,002 - HMPREF1078_RS06760 0.21 -1.0 755,002 - HMPREF1078_RS06760 0.21 +1.0 755,002 - HMPREF1078_RS06760 0.21 -0.5 755,002 - HMPREF1078_RS06760 0.21 -0.2 755,003 + HMPREF1078_RS06760 0.21 +1.1 755,003 + HMPREF1078_RS06760 0.21 -1.4 755,003 + HMPREF1078_RS06760 0.21 -0.1 755,003 + HMPREF1078_RS06760 0.21 -0.0 755,003 + HMPREF1078_RS06760 0.21 +0.8 755,003 + HMPREF1078_RS06760 0.21 -1.3 755,003 + HMPREF1078_RS06760 0.21 +0.1 755,003 + HMPREF1078_RS06760 0.21 +0.6 755,003 + HMPREF1078_RS06760 0.21 +0.4 755,004 - HMPREF1078_RS06760 0.21 +1.3 755,004 - HMPREF1078_RS06760 0.21 -1.1 755,004 - HMPREF1078_RS06760 0.21 +1.2 755,005 + HMPREF1078_RS06760 0.22 +0.3 755,005 + HMPREF1078_RS06760 0.22 +1.0 755,005 + HMPREF1078_RS06760 0.22 -1.3 755,006 - HMPREF1078_RS06760 0.22 +0.5 755,006 - HMPREF1078_RS06760 0.22 +0.2 755,006 - HMPREF1078_RS06760 0.22 -0.4 755,006 - HMPREF1078_RS06760 0.22 +0.7 755,058 + HMPREF1078_RS06760 0.30 -0.2 755,066 - HMPREF1078_RS06760 0.31 +0.8 755,235 + HMPREF1078_RS06760 0.58 +0.2 755,246 - HMPREF1078_RS06760 0.60 +0.4 755,247 + HMPREF1078_RS06760 0.60 -1.2
Or see this region's nucleotide sequence