Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04690

Experiment: D-Maltose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS04680 and HMPREF1078_RS04685 are separated by 12 nucleotidesHMPREF1078_RS04685 and HMPREF1078_RS04690 are separated by 14 nucleotidesHMPREF1078_RS04690 and HMPREF1078_RS04695 are separated by 91 nucleotides HMPREF1078_RS04680: HMPREF1078_RS04680 - FtsX-like permease family protein, at 180,519 to 181,754 _RS04680 HMPREF1078_RS04685: HMPREF1078_RS04685 - 30S ribosome-binding factor RbfA, at 181,767 to 182,102 _RS04685 HMPREF1078_RS04690: HMPREF1078_RS04690 - O-methyltransferase, at 182,117 to 182,740 _RS04690 HMPREF1078_RS04695: HMPREF1078_RS04695 - pyruvate kinase, at 182,832 to 184,283 _RS04695 Position (kb) 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 181.800 kb on - strandat 181.802 kb on - strand, within HMPREF1078_RS04685at 182.206 kb on + strand, within HMPREF1078_RS04690at 182.212 kb on + strand, within HMPREF1078_RS04690at 182.233 kb on + strand, within HMPREF1078_RS04690at 182.325 kb on + strand, within HMPREF1078_RS04690at 182.395 kb on + strand, within HMPREF1078_RS04690at 182.423 kb on + strand, within HMPREF1078_RS04690at 182.424 kb on - strand, within HMPREF1078_RS04690at 182.424 kb on - strand, within HMPREF1078_RS04690at 182.424 kb on - strand, within HMPREF1078_RS04690at 182.429 kb on - strand, within HMPREF1078_RS04690at 182.429 kb on - strand, within HMPREF1078_RS04690at 182.497 kb on + strand, within HMPREF1078_RS04690at 182.533 kb on + strand, within HMPREF1078_RS04690at 182.534 kb on - strand, within HMPREF1078_RS04690at 182.534 kb on - strand, within HMPREF1078_RS04690at 182.542 kb on + strand, within HMPREF1078_RS04690at 182.542 kb on + strand, within HMPREF1078_RS04690at 182.542 kb on + strand, within HMPREF1078_RS04690at 182.542 kb on + strand, within HMPREF1078_RS04690at 182.543 kb on - strand, within HMPREF1078_RS04690at 182.547 kb on + strand, within HMPREF1078_RS04690at 182.548 kb on - strand, within HMPREF1078_RS04690at 182.555 kb on - strand, within HMPREF1078_RS04690at 182.556 kb on + strand, within HMPREF1078_RS04690at 182.556 kb on + strand, within HMPREF1078_RS04690at 182.556 kb on + strand, within HMPREF1078_RS04690at 182.556 kb on + strand, within HMPREF1078_RS04690at 182.556 kb on + strand, within HMPREF1078_RS04690at 182.557 kb on - strand, within HMPREF1078_RS04690at 182.557 kb on - strand, within HMPREF1078_RS04690at 182.560 kb on + strand, within HMPREF1078_RS04690at 182.561 kb on - strand, within HMPREF1078_RS04690at 182.609 kb on - strand, within HMPREF1078_RS04690at 182.612 kb on + strand, within HMPREF1078_RS04690at 182.722 kb on + strandat 182.723 kb on - strandat 182.723 kb on - strandat 182.724 kb on + strandat 182.724 kb on + strandat 182.725 kb on - strandat 182.732 kb on + strandat 182.759 kb on - strandat 182.773 kb on - strandat 182.779 kb on + strandat 182.808 kb on - strandat 182.808 kb on - strandat 182.833 kb on + strandat 182.834 kb on - strandat 182.857 kb on + strandat 182.857 kb on + strandat 182.858 kb on - strandat 182.878 kb on - strandat 182.878 kb on - strandat 182.895 kb on - strandat 182.895 kb on - strandat 183.004 kb on + strand, within HMPREF1078_RS04695at 183.011 kb on - strand, within HMPREF1078_RS04695at 183.031 kb on + strand, within HMPREF1078_RS04695at 183.032 kb on - strand, within HMPREF1078_RS04695at 183.032 kb on - strand, within HMPREF1078_RS04695at 183.074 kb on + strand, within HMPREF1078_RS04695at 183.075 kb on - strand, within HMPREF1078_RS04695at 183.075 kb on - strand, within HMPREF1078_RS04695at 183.139 kb on + strand, within HMPREF1078_RS04695at 183.160 kb on + strand, within HMPREF1078_RS04695at 183.160 kb on + strand, within HMPREF1078_RS04695at 183.160 kb on + strand, within HMPREF1078_RS04695at 183.161 kb on - strand, within HMPREF1078_RS04695at 183.161 kb on - strand, within HMPREF1078_RS04695at 183.164 kb on + strand, within HMPREF1078_RS04695at 183.164 kb on + strand, within HMPREF1078_RS04695at 183.164 kb on + strand, within HMPREF1078_RS04695at 183.164 kb on + strand, within HMPREF1078_RS04695at 183.165 kb on - strand, within HMPREF1078_RS04695at 183.165 kb on - strand, within HMPREF1078_RS04695at 183.165 kb on - strand, within HMPREF1078_RS04695at 183.173 kb on + strand, within HMPREF1078_RS04695at 183.177 kb on - strand, within HMPREF1078_RS04695at 183.184 kb on - strand, within HMPREF1078_RS04695at 183.344 kb on - strand, within HMPREF1078_RS04695at 183.395 kb on - strand, within HMPREF1078_RS04695at 183.506 kb on + strand, within HMPREF1078_RS04695at 183.528 kb on - strand, within HMPREF1078_RS04695at 183.550 kb on - strand, within HMPREF1078_RS04695at 183.550 kb on - strand, within HMPREF1078_RS04695at 183.590 kb on - strand, within HMPREF1078_RS04695at 183.668 kb on + strand, within HMPREF1078_RS04695at 183.669 kb on - strand, within HMPREF1078_RS04695at 183.669 kb on - strand, within HMPREF1078_RS04695at 183.669 kb on - strand, within HMPREF1078_RS04695at 183.693 kb on - strand, within HMPREF1078_RS04695at 183.699 kb on + strand, within HMPREF1078_RS04695at 183.699 kb on + strand, within HMPREF1078_RS04695at 183.699 kb on + strand, within HMPREF1078_RS04695at 183.700 kb on - strand, within HMPREF1078_RS04695at 183.734 kb on + strand, within HMPREF1078_RS04695

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
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181,800 - -1.0
181,802 - HMPREF1078_RS04685 0.10 -1.0
182,206 + HMPREF1078_RS04690 0.14 -1.5
182,212 + HMPREF1078_RS04690 0.15 -1.1
182,233 + HMPREF1078_RS04690 0.19 -0.6
182,325 + HMPREF1078_RS04690 0.33 -2.8
182,395 + HMPREF1078_RS04690 0.45 -1.4
182,423 + HMPREF1078_RS04690 0.49 -0.8
182,424 - HMPREF1078_RS04690 0.49 -0.1
182,424 - HMPREF1078_RS04690 0.49 +1.4
182,424 - HMPREF1078_RS04690 0.49 +0.6
182,429 - HMPREF1078_RS04690 0.50 -0.4
182,429 - HMPREF1078_RS04690 0.50 -0.5
182,497 + HMPREF1078_RS04690 0.61 +0.3
182,533 + HMPREF1078_RS04690 0.67 -0.7
182,534 - HMPREF1078_RS04690 0.67 +1.1
182,534 - HMPREF1078_RS04690 0.67 +1.2
182,542 + HMPREF1078_RS04690 0.68 +3.0
182,542 + HMPREF1078_RS04690 0.68 -0.8
182,542 + HMPREF1078_RS04690 0.68 -2.5
182,542 + HMPREF1078_RS04690 0.68 -1.0
182,543 - HMPREF1078_RS04690 0.68 -1.2
182,547 + HMPREF1078_RS04690 0.69 +0.6
182,548 - HMPREF1078_RS04690 0.69 -0.8
182,555 - HMPREF1078_RS04690 0.70 -0.3
182,556 + HMPREF1078_RS04690 0.70 -3.0
182,556 + HMPREF1078_RS04690 0.70 -1.7
182,556 + HMPREF1078_RS04690 0.70 +0.8
182,556 + HMPREF1078_RS04690 0.70 -1.5
182,556 + HMPREF1078_RS04690 0.70 -1.8
182,557 - HMPREF1078_RS04690 0.71 -0.5
182,557 - HMPREF1078_RS04690 0.71 +0.4
182,560 + HMPREF1078_RS04690 0.71 -1.6
182,561 - HMPREF1078_RS04690 0.71 -2.3
182,609 - HMPREF1078_RS04690 0.79 -0.5
182,612 + HMPREF1078_RS04690 0.79 +0.4
182,722 + -3.5
182,723 - +1.1
182,723 - +2.0
182,724 + -0.6
182,724 + -1.7
182,725 - -0.3
182,732 + -2.1
182,759 - +0.9
182,773 - +1.2
182,779 + -0.2
182,808 - -0.4
182,808 - +1.4
182,833 + -0.7
182,834 - -2.2
182,857 + -0.0
182,857 + -0.4
182,858 - -0.6
182,878 - -0.8
182,878 - +1.9
182,895 - +1.4
182,895 - +1.3
183,004 + HMPREF1078_RS04695 0.12 -0.8
183,011 - HMPREF1078_RS04695 0.12 +0.8
183,031 + HMPREF1078_RS04695 0.14 -1.1
183,032 - HMPREF1078_RS04695 0.14 -0.7
183,032 - HMPREF1078_RS04695 0.14 +0.3
183,074 + HMPREF1078_RS04695 0.17 -1.4
183,075 - HMPREF1078_RS04695 0.17 -0.6
183,075 - HMPREF1078_RS04695 0.17 +1.8
183,139 + HMPREF1078_RS04695 0.21 -2.7
183,160 + HMPREF1078_RS04695 0.23 -0.7
183,160 + HMPREF1078_RS04695 0.23 -0.3
183,160 + HMPREF1078_RS04695 0.23 +1.7
183,161 - HMPREF1078_RS04695 0.23 -1.8
183,161 - HMPREF1078_RS04695 0.23 -1.5
183,164 + HMPREF1078_RS04695 0.23 -0.4
183,164 + HMPREF1078_RS04695 0.23 +0.1
183,164 + HMPREF1078_RS04695 0.23 -1.5
183,164 + HMPREF1078_RS04695 0.23 -0.3
183,165 - HMPREF1078_RS04695 0.23 -1.1
183,165 - HMPREF1078_RS04695 0.23 +0.4
183,165 - HMPREF1078_RS04695 0.23 -0.5
183,173 + HMPREF1078_RS04695 0.23 -1.7
183,177 - HMPREF1078_RS04695 0.24 -0.4
183,184 - HMPREF1078_RS04695 0.24 +3.0
183,344 - HMPREF1078_RS04695 0.35 +0.8
183,395 - HMPREF1078_RS04695 0.39 +0.0
183,506 + HMPREF1078_RS04695 0.46 -2.3
183,528 - HMPREF1078_RS04695 0.48 -0.5
183,550 - HMPREF1078_RS04695 0.49 -1.2
183,550 - HMPREF1078_RS04695 0.49 -1.3
183,590 - HMPREF1078_RS04695 0.52 +1.4
183,668 + HMPREF1078_RS04695 0.58 +0.3
183,669 - HMPREF1078_RS04695 0.58 -1.9
183,669 - HMPREF1078_RS04695 0.58 -0.2
183,669 - HMPREF1078_RS04695 0.58 +0.9
183,693 - HMPREF1078_RS04695 0.59 +0.3
183,699 + HMPREF1078_RS04695 0.60 -1.6
183,699 + HMPREF1078_RS04695 0.60 -2.8
183,699 + HMPREF1078_RS04695 0.60 -2.3
183,700 - HMPREF1078_RS04695 0.60 -0.4
183,734 + HMPREF1078_RS04695 0.62 -1.0

Or see this region's nucleotide sequence