Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03245 and HMPREF1078_RS03250 are separated by 83 nucleotides HMPREF1078_RS03250 and HMPREF1078_RS03255 are separated by 132 nucleotides HMPREF1078_RS03255 and HMPREF1078_RS03260 are separated by 38 nucleotides HMPREF1078_RS03260 and HMPREF1078_RS03265 are separated by 14 nucleotides
HMPREF1078_RS03245: HMPREF1078_RS03245 - DUF4099 domain-containing protein, at 769,107 to 769,892
_RS03245
HMPREF1078_RS03250: HMPREF1078_RS03250 - glucosaminidase domain-containing protein, at 769,976 to 770,611
_RS03250
HMPREF1078_RS03255: HMPREF1078_RS03255 - hypothetical protein, at 770,744 to 772,552
_RS03255
HMPREF1078_RS03260: HMPREF1078_RS03260 - hypothetical protein, at 772,591 to 773,157
_RS03260
HMPREF1078_RS03265: HMPREF1078_RS03265 - hypothetical protein, at 773,172 to 773,642
_RS03265
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 769.746 kb on + strand, within HMPREF1078_RS03245 at 769.804 kb on - strand, within HMPREF1078_RS03245 at 769.836 kb on + strand at 769.860 kb on + strand at 769.895 kb on + strand at 769.905 kb on - strand at 770.013 kb on + strand at 770.042 kb on + strand, within HMPREF1078_RS03250 at 770.043 kb on - strand, within HMPREF1078_RS03250 at 770.096 kb on + strand, within HMPREF1078_RS03250 at 770.097 kb on - strand, within HMPREF1078_RS03250 at 770.098 kb on + strand, within HMPREF1078_RS03250 at 770.099 kb on - strand, within HMPREF1078_RS03250 at 770.120 kb on - strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.266 kb on + strand, within HMPREF1078_RS03250 at 770.293 kb on + strand, within HMPREF1078_RS03250 at 770.294 kb on - strand, within HMPREF1078_RS03250 at 770.311 kb on + strand, within HMPREF1078_RS03250 at 770.312 kb on - strand, within HMPREF1078_RS03250 at 770.337 kb on + strand, within HMPREF1078_RS03250 at 770.367 kb on + strand, within HMPREF1078_RS03250 at 770.397 kb on + strand, within HMPREF1078_RS03250 at 770.398 kb on - strand, within HMPREF1078_RS03250 at 770.413 kb on + strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.414 kb on - strand, within HMPREF1078_RS03250 at 770.429 kb on - strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.440 kb on + strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.451 kb on - strand, within HMPREF1078_RS03250 at 770.453 kb on + strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.516 kb on - strand, within HMPREF1078_RS03250 at 770.573 kb on + strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.574 kb on - strand at 770.578 kb on + strand at 770.579 kb on - strand at 770.581 kb on + strand at 770.582 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.596 kb on - strand at 770.599 kb on - strand at 770.604 kb on + strand at 770.604 kb on + strand at 770.608 kb on - strand at 770.610 kb on - strand at 770.610 kb on - strand at 770.627 kb on + strand at 770.627 kb on + strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.663 kb on - strand at 770.667 kb on + strand at 770.668 kb on - strand at 770.720 kb on - strand at 770.720 kb on - strand at 770.724 kb on + strand at 770.728 kb on + strand at 770.728 kb on + strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.729 kb on - strand at 770.738 kb on + strand at 770.739 kb on - strand at 770.786 kb on - strand at 770.786 kb on - strand at 770.890 kb on - strand at 770.948 kb on - strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.956 kb on + strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.957 kb on - strand, within HMPREF1078_RS03255 at 770.984 kb on + strand, within HMPREF1078_RS03255 at 771.017 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.089 kb on + strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.090 kb on - strand, within HMPREF1078_RS03255 at 771.164 kb on + strand, within HMPREF1078_RS03255 at 771.188 kb on - strand, within HMPREF1078_RS03255 at 771.208 kb on - strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.248 kb on + strand, within HMPREF1078_RS03255 at 771.249 kb on - strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.253 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.290 kb on + strand, within HMPREF1078_RS03255 at 771.411 kb on + strand, within HMPREF1078_RS03255 at 771.412 kb on - strand, within HMPREF1078_RS03255 at 771.503 kb on + strand, within HMPREF1078_RS03255 at 771.537 kb on - strand, within HMPREF1078_RS03255 at 771.541 kb on + strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.581 kb on - strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.582 kb on + strand, within HMPREF1078_RS03255 at 771.589 kb on + strand, within HMPREF1078_RS03255 at 771.592 kb on + strand, within HMPREF1078_RS03255 at 771.633 kb on - strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.662 kb on + strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.663 kb on - strand, within HMPREF1078_RS03255 at 771.669 kb on + strand, within HMPREF1078_RS03255 at 771.669 kb on + strand, within HMPREF1078_RS03255 at 771.672 kb on + strand, within HMPREF1078_RS03255 at 771.681 kb on + strand, within HMPREF1078_RS03255 at 771.681 kb on + strand, within HMPREF1078_RS03255 at 771.705 kb on + strand, within HMPREF1078_RS03255 at 771.850 kb on + strand, within HMPREF1078_RS03255 at 771.851 kb on - strand, within HMPREF1078_RS03255 at 771.871 kb on - strand, within HMPREF1078_RS03255 at 771.884 kb on + strand, within HMPREF1078_RS03255 at 771.884 kb on + strand, within HMPREF1078_RS03255 at 771.891 kb on - strand, within HMPREF1078_RS03255 at 772.032 kb on - strand, within HMPREF1078_RS03255 at 772.096 kb on + strand, within HMPREF1078_RS03255 at 772.110 kb on - strand, within HMPREF1078_RS03255 at 772.111 kb on + strand, within HMPREF1078_RS03255 at 772.112 kb on - strand, within HMPREF1078_RS03255 at 772.178 kb on + strand, within HMPREF1078_RS03255 at 772.182 kb on + strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.223 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.300 kb on - strand, within HMPREF1078_RS03255 at 772.310 kb on + strand, within HMPREF1078_RS03255 at 772.332 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.334 kb on - strand, within HMPREF1078_RS03255 at 772.389 kb on + strand at 772.425 kb on + strand at 772.444 kb on + strand at 772.445 kb on - strand at 772.445 kb on - strand at 772.453 kb on - strand at 772.480 kb on + strand at 772.480 kb on + strand at 772.496 kb on - strand at 772.519 kb on + strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.520 kb on - strand at 772.540 kb on - strand at 772.550 kb on + strand at 772.554 kb on + strand at 772.591 kb on - strand at 772.645 kb on - strand at 772.729 kb on - strand, within HMPREF1078_RS03260 at 772.749 kb on + strand, within HMPREF1078_RS03260 at 772.755 kb on - strand, within HMPREF1078_RS03260 at 772.760 kb on - strand, within HMPREF1078_RS03260 at 772.810 kb on + strand, within HMPREF1078_RS03260 at 772.811 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.848 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.850 kb on - strand, within HMPREF1078_RS03260 at 772.873 kb on - strand, within HMPREF1078_RS03260 at 772.924 kb on - strand, within HMPREF1078_RS03260 at 772.978 kb on - strand, within HMPREF1078_RS03260 at 772.985 kb on - strand, within HMPREF1078_RS03260 at 773.002 kb on - strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.018 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on + strand, within HMPREF1078_RS03260 at 773.066 kb on - strand, within HMPREF1078_RS03260 at 773.110 kb on - strand at 773.172 kb on - strand at 773.212 kb on + strand at 773.213 kb on - strand at 773.297 kb on + strand, within HMPREF1078_RS03265 at 773.324 kb on + strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.325 kb on - strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.364 kb on + strand, within HMPREF1078_RS03265 at 773.374 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.390 kb on + strand, within HMPREF1078_RS03265 at 773.472 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.488 kb on + strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.489 kb on - strand, within HMPREF1078_RS03265 at 773.492 kb on + strand, within HMPREF1078_RS03265 at 773.493 kb on - strand, within HMPREF1078_RS03265 at 773.517 kb on + strand, within HMPREF1078_RS03265 at 773.518 kb on - strand, within HMPREF1078_RS03265 at 773.521 kb on - strand, within HMPREF1078_RS03265 at 773.529 kb on - strand, within HMPREF1078_RS03265 at 773.532 kb on + strand, within HMPREF1078_RS03265 at 773.549 kb on + strand, within HMPREF1078_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 769,746 + HMPREF1078_RS03245 0.81 -0.8 769,804 - HMPREF1078_RS03245 0.89 -1.1 769,836 + -0.0 769,860 + -0.0 769,895 + -0.8 769,905 - +0.5 770,013 + +0.2 770,042 + HMPREF1078_RS03250 0.10 -0.5 770,043 - HMPREF1078_RS03250 0.11 -0.1 770,096 + HMPREF1078_RS03250 0.19 +0.1 770,097 - HMPREF1078_RS03250 0.19 +0.5 770,098 + HMPREF1078_RS03250 0.19 -2.2 770,099 - HMPREF1078_RS03250 0.19 +0.7 770,120 - HMPREF1078_RS03250 0.23 -0.0 770,266 + HMPREF1078_RS03250 0.46 +1.7 770,266 + HMPREF1078_RS03250 0.46 +0.6 770,293 + HMPREF1078_RS03250 0.50 +0.5 770,294 - HMPREF1078_RS03250 0.50 -1.6 770,311 + HMPREF1078_RS03250 0.53 -1.8 770,312 - HMPREF1078_RS03250 0.53 -0.5 770,337 + HMPREF1078_RS03250 0.57 +0.1 770,367 + HMPREF1078_RS03250 0.61 +2.7 770,397 + HMPREF1078_RS03250 0.66 -0.5 770,398 - HMPREF1078_RS03250 0.66 +1.5 770,413 + HMPREF1078_RS03250 0.69 +0.4 770,414 - HMPREF1078_RS03250 0.69 -0.3 770,414 - HMPREF1078_RS03250 0.69 -1.5 770,429 - HMPREF1078_RS03250 0.71 -1.4 770,440 + HMPREF1078_RS03250 0.73 -1.2 770,440 + HMPREF1078_RS03250 0.73 +1.1 770,451 - HMPREF1078_RS03250 0.75 +0.0 770,451 - HMPREF1078_RS03250 0.75 -1.2 770,453 + HMPREF1078_RS03250 0.75 +0.1 770,516 - HMPREF1078_RS03250 0.85 -0.8 770,516 - HMPREF1078_RS03250 0.85 -0.8 770,573 + -0.4 770,574 - +0.3 770,574 - -0.6 770,574 - -0.2 770,578 + -0.5 770,579 - +0.8 770,581 + -1.5 770,582 - -0.7 770,596 - +1.2 770,596 - -1.5 770,596 - -0.3 770,596 - -0.4 770,596 - +0.2 770,596 - -0.8 770,599 - -1.0 770,604 + -0.2 770,604 + -0.6 770,608 - -0.1 770,610 - +0.2 770,610 - -1.8 770,627 + +0.6 770,627 + +1.7 770,663 - -2.0 770,663 - -2.0 770,663 - +0.9 770,667 + +0.3 770,668 - +1.4 770,720 - -0.8 770,720 - -0.4 770,724 + -0.9 770,728 + -1.3 770,728 + +0.6 770,729 - -1.5 770,729 - -1.2 770,729 - +0.0 770,729 - +0.1 770,729 - +0.4 770,729 - -0.8 770,729 - +0.0 770,729 - +0.9 770,738 + -0.4 770,739 - -2.1 770,786 - -0.5 770,786 - -0.8 770,890 - -1.4 770,948 - HMPREF1078_RS03255 0.11 -2.1 770,956 + HMPREF1078_RS03255 0.12 -0.5 770,956 + HMPREF1078_RS03255 0.12 +1.4 770,957 - HMPREF1078_RS03255 0.12 -1.9 770,957 - HMPREF1078_RS03255 0.12 -0.7 770,984 + HMPREF1078_RS03255 0.13 +1.5 771,017 + HMPREF1078_RS03255 0.15 +0.2 771,089 + HMPREF1078_RS03255 0.19 -0.9 771,089 + HMPREF1078_RS03255 0.19 +0.2 771,089 + HMPREF1078_RS03255 0.19 +0.3 771,090 - HMPREF1078_RS03255 0.19 -0.6 771,090 - HMPREF1078_RS03255 0.19 +0.6 771,164 + HMPREF1078_RS03255 0.23 +1.2 771,188 - HMPREF1078_RS03255 0.25 +0.8 771,208 - HMPREF1078_RS03255 0.26 +0.0 771,248 + HMPREF1078_RS03255 0.28 -0.1 771,248 + HMPREF1078_RS03255 0.28 +1.2 771,249 - HMPREF1078_RS03255 0.28 -2.5 771,253 + HMPREF1078_RS03255 0.28 +1.5 771,253 + HMPREF1078_RS03255 0.28 +0.3 771,290 + HMPREF1078_RS03255 0.30 -2.2 771,290 + HMPREF1078_RS03255 0.30 +1.3 771,411 + HMPREF1078_RS03255 0.37 -1.0 771,412 - HMPREF1078_RS03255 0.37 +0.8 771,503 + HMPREF1078_RS03255 0.42 -3.8 771,537 - HMPREF1078_RS03255 0.44 -0.3 771,541 + HMPREF1078_RS03255 0.44 +0.0 771,581 - HMPREF1078_RS03255 0.46 -0.2 771,581 - HMPREF1078_RS03255 0.46 +1.7 771,581 - HMPREF1078_RS03255 0.46 -1.2 771,582 + HMPREF1078_RS03255 0.46 +0.8 771,582 + HMPREF1078_RS03255 0.46 +2.5 771,589 + HMPREF1078_RS03255 0.47 -1.3 771,592 + HMPREF1078_RS03255 0.47 -0.1 771,633 - HMPREF1078_RS03255 0.49 -1.5 771,662 + HMPREF1078_RS03255 0.51 -2.0 771,662 + HMPREF1078_RS03255 0.51 +0.4 771,662 + HMPREF1078_RS03255 0.51 -0.8 771,662 + HMPREF1078_RS03255 0.51 -0.8 771,663 - HMPREF1078_RS03255 0.51 -3.3 771,663 - HMPREF1078_RS03255 0.51 +1.1 771,663 - HMPREF1078_RS03255 0.51 -1.1 771,669 + HMPREF1078_RS03255 0.51 -1.3 771,669 + HMPREF1078_RS03255 0.51 +0.2 771,672 + HMPREF1078_RS03255 0.51 +0.9 771,681 + HMPREF1078_RS03255 0.52 +0.5 771,681 + HMPREF1078_RS03255 0.52 +0.2 771,705 + HMPREF1078_RS03255 0.53 +0.1 771,850 + HMPREF1078_RS03255 0.61 -2.1 771,851 - HMPREF1078_RS03255 0.61 +1.1 771,871 - HMPREF1078_RS03255 0.62 +0.1 771,884 + HMPREF1078_RS03255 0.63 +0.4 771,884 + HMPREF1078_RS03255 0.63 -1.3 771,891 - HMPREF1078_RS03255 0.63 -0.5 772,032 - HMPREF1078_RS03255 0.71 -1.6 772,096 + HMPREF1078_RS03255 0.75 -0.8 772,110 - HMPREF1078_RS03255 0.76 -1.8 772,111 + HMPREF1078_RS03255 0.76 +0.9 772,112 - HMPREF1078_RS03255 0.76 +1.4 772,178 + HMPREF1078_RS03255 0.79 +0.1 772,182 + HMPREF1078_RS03255 0.79 +5.7 772,223 - HMPREF1078_RS03255 0.82 +0.8 772,223 - HMPREF1078_RS03255 0.82 +0.3 772,300 - HMPREF1078_RS03255 0.86 +0.4 772,300 - HMPREF1078_RS03255 0.86 -0.3 772,310 + HMPREF1078_RS03255 0.87 +0.8 772,332 - HMPREF1078_RS03255 0.88 -0.5 772,334 - HMPREF1078_RS03255 0.88 -0.4 772,334 - HMPREF1078_RS03255 0.88 -0.0 772,334 - HMPREF1078_RS03255 0.88 +4.3 772,389 + -0.8 772,425 + +0.7 772,444 + +0.6 772,445 - +0.4 772,445 - +1.5 772,453 - +0.1 772,480 + +3.0 772,480 + +0.1 772,496 - -2.0 772,519 + -1.0 772,520 - -1.1 772,520 - -0.5 772,520 - -0.5 772,520 - +0.4 772,520 - -1.0 772,540 - +1.3 772,550 + +0.9 772,554 + -0.4 772,591 - +0.1 772,645 - -0.1 772,729 - HMPREF1078_RS03260 0.24 +1.1 772,749 + HMPREF1078_RS03260 0.28 -1.3 772,755 - HMPREF1078_RS03260 0.29 -0.3 772,760 - HMPREF1078_RS03260 0.30 -0.9 772,810 + HMPREF1078_RS03260 0.39 +3.0 772,811 - HMPREF1078_RS03260 0.39 -2.4 772,848 - HMPREF1078_RS03260 0.45 +0.4 772,848 - HMPREF1078_RS03260 0.45 +0.7 772,850 - HMPREF1078_RS03260 0.46 -0.8 772,850 - HMPREF1078_RS03260 0.46 +0.8 772,873 - HMPREF1078_RS03260 0.50 -0.9 772,924 - HMPREF1078_RS03260 0.59 -1.6 772,978 - HMPREF1078_RS03260 0.68 -1.3 772,985 - HMPREF1078_RS03260 0.69 +0.2 773,002 - HMPREF1078_RS03260 0.72 +0.3 773,018 + HMPREF1078_RS03260 0.75 -2.7 773,018 + HMPREF1078_RS03260 0.75 -1.4 773,066 + HMPREF1078_RS03260 0.84 +0.4 773,066 - HMPREF1078_RS03260 0.84 +2.7 773,110 - -1.8 773,172 - +0.1 773,212 + +0.8 773,213 - -0.5 773,297 + HMPREF1078_RS03265 0.27 +0.0 773,324 + HMPREF1078_RS03265 0.32 +0.7 773,325 - HMPREF1078_RS03265 0.32 +0.1 773,325 - HMPREF1078_RS03265 0.32 +2.3 773,364 + HMPREF1078_RS03265 0.41 +0.9 773,364 + HMPREF1078_RS03265 0.41 +0.0 773,374 + HMPREF1078_RS03265 0.43 +0.4 773,390 + HMPREF1078_RS03265 0.46 -0.2 773,390 + HMPREF1078_RS03265 0.46 -0.5 773,390 + HMPREF1078_RS03265 0.46 -0.6 773,472 + HMPREF1078_RS03265 0.64 -1.0 773,488 + HMPREF1078_RS03265 0.67 -0.4 773,488 + HMPREF1078_RS03265 0.67 +3.0 773,488 + HMPREF1078_RS03265 0.67 -0.0 773,489 - HMPREF1078_RS03265 0.67 -0.9 773,489 - HMPREF1078_RS03265 0.67 -0.5 773,489 - HMPREF1078_RS03265 0.67 -2.2 773,492 + HMPREF1078_RS03265 0.68 +0.1 773,493 - HMPREF1078_RS03265 0.68 +0.4 773,517 + HMPREF1078_RS03265 0.73 -0.0 773,518 - HMPREF1078_RS03265 0.73 +0.1 773,521 - HMPREF1078_RS03265 0.74 +0.2 773,529 - HMPREF1078_RS03265 0.76 +0.6 773,532 + HMPREF1078_RS03265 0.76 -0.9 773,549 + HMPREF1078_RS03265 0.80 -1.0
Or see this region's nucleotide sequence