Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03200 and HMPREF1078_RS03205 are separated by 323 nucleotides HMPREF1078_RS03205 and HMPREF1078_RS03210 overlap by 4 nucleotides HMPREF1078_RS03210 and HMPREF1078_RS03215 overlap by 4 nucleotides HMPREF1078_RS03215 and HMPREF1078_RS03220 are separated by 26 nucleotides
HMPREF1078_RS03200: HMPREF1078_RS03200 - site-specific integrase, at 761,208 to 762,134
_RS03200
HMPREF1078_RS03205: HMPREF1078_RS03205 - hypothetical protein, at 762,458 to 763,132
_RS03205
HMPREF1078_RS03210: HMPREF1078_RS03210 - hypothetical protein, at 763,129 to 763,674
_RS03210
HMPREF1078_RS03215: HMPREF1078_RS03215 - DNA topoisomerase I, at 763,671 to 764,216
_RS03215
HMPREF1078_RS03220: HMPREF1078_RS03220 - hypothetical protein, at 764,243 to 764,983
_RS03220
Position (kb) 763
764 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 762.132 kb on + strand at 762.133 kb on - strand at 762.133 kb on - strand at 762.139 kb on - strand at 762.139 kb on - strand at 762.140 kb on + strand at 762.140 kb on + strand at 762.140 kb on + strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.141 kb on - strand at 762.151 kb on + strand at 762.152 kb on - strand at 762.152 kb on - strand at 762.179 kb on - strand at 762.180 kb on + strand at 762.180 kb on + strand at 762.181 kb on - strand at 762.184 kb on + strand at 762.185 kb on - strand at 762.185 kb on - strand at 762.209 kb on + strand at 762.209 kb on + strand at 762.210 kb on - strand at 762.228 kb on + strand at 762.229 kb on - strand at 762.232 kb on - strand at 762.232 kb on - strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.235 kb on - strand at 762.242 kb on + strand at 762.243 kb on - strand at 762.243 kb on - strand at 762.246 kb on + strand at 762.246 kb on + strand at 762.246 kb on + strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.247 kb on - strand at 762.252 kb on - strand at 762.253 kb on + strand at 762.260 kb on + strand at 762.261 kb on - strand at 762.264 kb on + strand at 762.265 kb on - strand at 762.279 kb on + strand at 762.280 kb on - strand at 762.281 kb on + strand at 762.282 kb on - strand at 762.286 kb on + strand at 762.286 kb on + strand at 762.286 kb on + strand at 762.291 kb on + strand at 762.324 kb on - strand at 762.330 kb on - strand at 762.353 kb on - strand at 762.353 kb on - strand at 762.387 kb on - strand at 762.397 kb on + strand at 762.414 kb on + strand at 762.414 kb on + strand at 762.414 kb on + strand at 762.415 kb on - strand at 762.415 kb on - strand at 762.420 kb on - strand at 762.441 kb on + strand at 762.442 kb on - strand at 762.443 kb on + strand at 762.443 kb on + strand at 762.444 kb on - strand at 762.444 kb on - strand at 762.444 kb on - strand at 762.460 kb on - strand at 762.460 kb on - strand at 762.469 kb on + strand at 762.470 kb on - strand at 762.471 kb on + strand at 762.471 kb on + strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.472 kb on - strand at 762.473 kb on + strand at 762.473 kb on + strand at 762.473 kb on + strand at 762.474 kb on - strand at 762.474 kb on - strand at 762.476 kb on - strand at 762.526 kb on + strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.527 kb on - strand, within HMPREF1078_RS03205 at 762.541 kb on + strand, within HMPREF1078_RS03205 at 762.613 kb on + strand, within HMPREF1078_RS03205 at 762.644 kb on - strand, within HMPREF1078_RS03205 at 762.649 kb on + strand, within HMPREF1078_RS03205 at 762.649 kb on + strand, within HMPREF1078_RS03205 at 762.650 kb on - strand, within HMPREF1078_RS03205 at 762.659 kb on - strand, within HMPREF1078_RS03205 at 762.709 kb on + strand, within HMPREF1078_RS03205 at 762.710 kb on - strand, within HMPREF1078_RS03205 at 762.712 kb on - strand, within HMPREF1078_RS03205 at 762.717 kb on + strand, within HMPREF1078_RS03205 at 762.778 kb on + strand, within HMPREF1078_RS03205 at 762.784 kb on - strand, within HMPREF1078_RS03205 at 762.784 kb on - strand, within HMPREF1078_RS03205 at 762.792 kb on + strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.793 kb on - strand, within HMPREF1078_RS03205 at 762.835 kb on + strand, within HMPREF1078_RS03205 at 762.880 kb on + strand, within HMPREF1078_RS03205 at 762.891 kb on + strand, within HMPREF1078_RS03205 at 762.901 kb on - strand, within HMPREF1078_RS03205 at 762.926 kb on - strand, within HMPREF1078_RS03205 at 762.932 kb on + strand, within HMPREF1078_RS03205 at 762.933 kb on - strand, within HMPREF1078_RS03205 at 762.993 kb on - strand, within HMPREF1078_RS03205 at 762.993 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 762.995 kb on - strand, within HMPREF1078_RS03205 at 763.014 kb on - strand, within HMPREF1078_RS03205 at 763.037 kb on + strand, within HMPREF1078_RS03205 at 763.132 kb on + strand at 763.133 kb on - strand at 763.133 kb on - strand at 763.236 kb on - strand, within HMPREF1078_RS03210 at 763.236 kb on - strand, within HMPREF1078_RS03210 at 763.241 kb on - strand, within HMPREF1078_RS03210 at 763.247 kb on - strand, within HMPREF1078_RS03210 at 763.398 kb on + strand, within HMPREF1078_RS03210 at 763.419 kb on + strand, within HMPREF1078_RS03210 at 763.481 kb on + strand, within HMPREF1078_RS03210 at 763.481 kb on + strand, within HMPREF1078_RS03210 at 763.482 kb on - strand, within HMPREF1078_RS03210 at 763.587 kb on + strand, within HMPREF1078_RS03210 at 763.649 kb on - strand at 763.654 kb on + strand at 763.675 kb on - strand at 763.744 kb on + strand, within HMPREF1078_RS03215 at 763.766 kb on + strand, within HMPREF1078_RS03215 at 763.766 kb on + strand, within HMPREF1078_RS03215 at 763.767 kb on - strand, within HMPREF1078_RS03215 at 763.767 kb on - strand, within HMPREF1078_RS03215 at 763.821 kb on + strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.822 kb on - strand, within HMPREF1078_RS03215 at 763.823 kb on + strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.824 kb on - strand, within HMPREF1078_RS03215 at 763.833 kb on + strand, within HMPREF1078_RS03215 at 763.868 kb on - strand, within HMPREF1078_RS03215 at 763.903 kb on - strand, within HMPREF1078_RS03215 at 763.903 kb on - strand, within HMPREF1078_RS03215 at 763.946 kb on + strand, within HMPREF1078_RS03215 at 764.105 kb on + strand, within HMPREF1078_RS03215 at 764.105 kb on + strand, within HMPREF1078_RS03215 at 764.106 kb on - strand, within HMPREF1078_RS03215 at 764.194 kb on - strand at 764.196 kb on - strand at 764.230 kb on + strand at 764.288 kb on + strand at 764.289 kb on - strand at 764.289 kb on - strand at 764.369 kb on + strand, within HMPREF1078_RS03220 at 764.402 kb on - strand, within HMPREF1078_RS03220 at 764.424 kb on - strand, within HMPREF1078_RS03220 at 764.435 kb on + strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.436 kb on - strand, within HMPREF1078_RS03220 at 764.439 kb on + strand, within HMPREF1078_RS03220 at 764.440 kb on - strand, within HMPREF1078_RS03220 at 764.440 kb on - strand, within HMPREF1078_RS03220 at 764.468 kb on + strand, within HMPREF1078_RS03220 at 764.469 kb on - strand, within HMPREF1078_RS03220 at 764.506 kb on + strand, within HMPREF1078_RS03220 at 764.507 kb on - strand, within HMPREF1078_RS03220 at 764.507 kb on - strand, within HMPREF1078_RS03220 at 764.511 kb on + strand, within HMPREF1078_RS03220 at 764.663 kb on + strand, within HMPREF1078_RS03220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 762,132 + +0.4 762,133 - -2.1 762,133 - -2.4 762,139 - -0.6 762,139 - +0.3 762,140 + -1.8 762,140 + +0.5 762,140 + -1.2 762,141 - +1.5 762,141 - -0.2 762,141 - -1.2 762,141 - -0.7 762,141 - +0.6 762,151 + -0.0 762,152 - -0.1 762,152 - -0.6 762,179 - -0.4 762,180 + +0.1 762,180 + -1.5 762,181 - -0.3 762,184 + +0.3 762,185 - -1.2 762,185 - +0.4 762,209 + +0.1 762,209 + +1.0 762,210 - -1.1 762,228 + -1.5 762,229 - -0.4 762,232 - -2.1 762,232 - -0.1 762,234 + -0.3 762,234 + +1.0 762,235 - -2.1 762,242 + -2.5 762,243 - -0.5 762,243 - -1.2 762,246 + +1.3 762,246 + +0.0 762,246 + +1.2 762,247 - -0.3 762,247 - -0.0 762,247 - -0.9 762,247 - -0.7 762,247 - -0.1 762,247 - +0.7 762,247 - +0.4 762,247 - +0.2 762,252 - -0.4 762,253 + -0.1 762,260 + -0.7 762,261 - -0.2 762,264 + +0.2 762,265 - -2.1 762,279 + +0.4 762,280 - -1.8 762,281 + -0.1 762,282 - -2.3 762,286 + -0.3 762,286 + +1.7 762,286 + -0.5 762,291 + +1.4 762,324 - -0.6 762,330 - -0.7 762,353 - -0.9 762,353 - -2.5 762,387 - +0.5 762,397 + -0.5 762,414 + +0.2 762,414 + -0.7 762,414 + -0.0 762,415 - -1.7 762,415 - -0.6 762,420 - -0.7 762,441 + +1.4 762,442 - +0.1 762,443 + +0.5 762,443 + -0.1 762,444 - +1.4 762,444 - -2.6 762,444 - -0.1 762,460 - -0.4 762,460 - -0.5 762,469 + -2.0 762,470 - +0.4 762,471 + -0.1 762,471 + -0.4 762,472 - -1.0 762,472 - +1.4 762,472 - +0.9 762,472 - +1.1 762,473 + -2.3 762,473 + +3.4 762,473 + +0.3 762,474 - +0.9 762,474 - +0.2 762,476 - -0.3 762,526 + HMPREF1078_RS03205 0.10 -1.2 762,527 - HMPREF1078_RS03205 0.10 -0.3 762,527 - HMPREF1078_RS03205 0.10 -1.7 762,527 - HMPREF1078_RS03205 0.10 -2.4 762,527 - HMPREF1078_RS03205 0.10 -0.0 762,541 + HMPREF1078_RS03205 0.12 -1.3 762,613 + HMPREF1078_RS03205 0.23 -0.4 762,644 - HMPREF1078_RS03205 0.28 -0.4 762,649 + HMPREF1078_RS03205 0.28 -3.9 762,649 + HMPREF1078_RS03205 0.28 -1.0 762,650 - HMPREF1078_RS03205 0.28 +0.3 762,659 - HMPREF1078_RS03205 0.30 +1.1 762,709 + HMPREF1078_RS03205 0.37 -1.2 762,710 - HMPREF1078_RS03205 0.37 -0.7 762,712 - HMPREF1078_RS03205 0.38 -1.0 762,717 + HMPREF1078_RS03205 0.38 -1.0 762,778 + HMPREF1078_RS03205 0.47 +0.6 762,784 - HMPREF1078_RS03205 0.48 +0.2 762,784 - HMPREF1078_RS03205 0.48 -0.8 762,792 + HMPREF1078_RS03205 0.49 -1.9 762,793 - HMPREF1078_RS03205 0.50 -1.1 762,793 - HMPREF1078_RS03205 0.50 -3.5 762,793 - HMPREF1078_RS03205 0.50 -1.4 762,835 + HMPREF1078_RS03205 0.56 +0.1 762,880 + HMPREF1078_RS03205 0.63 -1.5 762,891 + HMPREF1078_RS03205 0.64 +2.1 762,901 - HMPREF1078_RS03205 0.66 -0.5 762,926 - HMPREF1078_RS03205 0.69 -0.8 762,932 + HMPREF1078_RS03205 0.70 -0.8 762,933 - HMPREF1078_RS03205 0.70 -1.2 762,993 - HMPREF1078_RS03205 0.79 +1.2 762,993 - HMPREF1078_RS03205 0.79 -2.4 762,995 - HMPREF1078_RS03205 0.80 -1.1 762,995 - HMPREF1078_RS03205 0.80 -3.2 762,995 - HMPREF1078_RS03205 0.80 -0.7 763,014 - HMPREF1078_RS03205 0.82 -1.7 763,037 + HMPREF1078_RS03205 0.86 +0.2 763,132 + -0.9 763,133 - -2.8 763,133 - -0.1 763,236 - HMPREF1078_RS03210 0.20 +0.1 763,236 - HMPREF1078_RS03210 0.20 -0.3 763,241 - HMPREF1078_RS03210 0.21 -1.1 763,247 - HMPREF1078_RS03210 0.22 -2.0 763,398 + HMPREF1078_RS03210 0.49 +0.1 763,419 + HMPREF1078_RS03210 0.53 -0.7 763,481 + HMPREF1078_RS03210 0.64 -1.1 763,481 + HMPREF1078_RS03210 0.64 -0.2 763,482 - HMPREF1078_RS03210 0.65 -0.6 763,587 + HMPREF1078_RS03210 0.84 -0.4 763,649 - -0.4 763,654 + +0.8 763,675 - -2.0 763,744 + HMPREF1078_RS03215 0.13 +0.4 763,766 + HMPREF1078_RS03215 0.17 -1.5 763,766 + HMPREF1078_RS03215 0.17 -1.8 763,767 - HMPREF1078_RS03215 0.18 +1.7 763,767 - HMPREF1078_RS03215 0.18 +0.4 763,821 + HMPREF1078_RS03215 0.27 +0.4 763,822 - HMPREF1078_RS03215 0.28 +0.1 763,822 - HMPREF1078_RS03215 0.28 +1.0 763,822 - HMPREF1078_RS03215 0.28 -0.7 763,823 + HMPREF1078_RS03215 0.28 +0.3 763,824 - HMPREF1078_RS03215 0.28 +1.0 763,824 - HMPREF1078_RS03215 0.28 +1.9 763,824 - HMPREF1078_RS03215 0.28 -1.4 763,833 + HMPREF1078_RS03215 0.30 +0.5 763,868 - HMPREF1078_RS03215 0.36 -1.7 763,903 - HMPREF1078_RS03215 0.42 +0.8 763,903 - HMPREF1078_RS03215 0.42 -1.2 763,946 + HMPREF1078_RS03215 0.50 +1.0 764,105 + HMPREF1078_RS03215 0.79 +0.6 764,105 + HMPREF1078_RS03215 0.79 -0.7 764,106 - HMPREF1078_RS03215 0.80 -1.0 764,194 - -1.0 764,196 - -1.1 764,230 + -0.2 764,288 + +0.9 764,289 - -0.9 764,289 - -0.6 764,369 + HMPREF1078_RS03220 0.17 -1.5 764,402 - HMPREF1078_RS03220 0.21 +1.7 764,424 - HMPREF1078_RS03220 0.24 -2.4 764,435 + HMPREF1078_RS03220 0.26 +1.0 764,436 - HMPREF1078_RS03220 0.26 -0.4 764,436 - HMPREF1078_RS03220 0.26 -1.2 764,436 - HMPREF1078_RS03220 0.26 -0.5 764,436 - HMPREF1078_RS03220 0.26 -3.8 764,439 + HMPREF1078_RS03220 0.26 -1.0 764,440 - HMPREF1078_RS03220 0.27 -0.6 764,440 - HMPREF1078_RS03220 0.27 -0.1 764,468 + HMPREF1078_RS03220 0.30 +0.3 764,469 - HMPREF1078_RS03220 0.30 -0.7 764,506 + HMPREF1078_RS03220 0.35 -0.9 764,507 - HMPREF1078_RS03220 0.36 -2.1 764,507 - HMPREF1078_RS03220 0.36 -0.8 764,511 + HMPREF1078_RS03220 0.36 -0.4 764,663 + HMPREF1078_RS03220 0.57 -1.2
Or see this region's nucleotide sequence